Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for RNF4

Gene Name Gene ID Reads Annotation
RNF4 ENSDARG00000090993 688 ring finger protein 4 [Source:ZFIN;Acc:ZDB-GENE-041008-246]










Genes with expression patterns similar to RNF4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. RNF4 ENSDARG00000090993 688 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ring finger protein 4 [Source:ZFIN;Acc:ZDB-GENE-041008-246]
2. katnbl1 ENSDARG00000042522 1086 1.673 - 0.899 - 0.774 - - - - - katanin p80 subunit B-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4155]
3. abhd11 ENSDARG00000069501 668 1.59 - 0.856 - - - 0.734 - - - abhydrolase domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-040909-1]
4. nck2b ENSDARG00000043361 908 1.572 - 0.838 - 0.734 - - - - - NCK adaptor protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-235]
5. si:dkeyp-7b3.1 si:dkeyp-7b3.1 615 1.556 - 0.834 - - - - 0.722 - -
6. pura pura 1854 1.555 - 0.800 - - - 0.755 - - -
7. SENP7 SENP7 1097 1.542 0.756 0.786 - - - - - - -
8. rprd2b ENSDARG00000074676 809 1.534 - 0.797 - 0.737 - - - - - regulation of nuclear pre-mRNA domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-110719-1]
9. dgcr14 1608 1.527 - 0.827 - 0.700 - - - - - DiGeorge syndrome critical region gene 14
10. creb1b ENSDARG00000093420 524 1.518 - 0.775 - 0.743 - - - - - cAMP responsive element binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-050417-355]
11. anapc7 ENSDARG00000063005 1139 1.486 - - - 0.774 - 0.712 - - - anaphase promoting complex subunit 7 [Source:ZFIN;Acc:ZDB-GENE-081104-113]
12. gtf2a1 ENSDARG00000011000 2026 1.484 - 0.758 - - - - 0.726 - - general transcription factor IIA, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2694]
13. ppp1r14ab ENSDARG00000017710, ENSDARG00000110779 3296 1.484 - - - 0.771 - - 0.713 - - protein phosphatase 1, regulatory (inhibitor) subunit 14Ab [Source:ZFIN;Acc:ZDB-GENE-040426-1783]
14. st18 663 1.475 0.714 - - 0.761 - - - - - suppression of tumorigenicity 18, zinc finger
15. FBXL3 FBXL3 1769 1.475 - 0.729 - 0.746 - - - - -
16. THOP1 ENSDARG00000013776 2717 1.453 - - - 0.705 - 0.748 - - - thimet oligopeptidase 1 [Source:ZFIN;Acc:ZDB-GENE-040718-47]
17. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 1.448 0.711 - - 0.737 - - - - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
18. usp42 ENSDARG00000077300 926 1.433 - - - 0.704 - - 0.729 - - ubiquitin specific peptidase 42 [Source:ZFIN;Acc:ZDB-GENE-030131-5739]
19. inip ENSDARG00000028523 1925 1.414 0.706 0.708 - - - - - - - ints3 and nabp interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-961]
20. nle1 ENSDARG00000057105 522 0.935 - 0.935 - - - - - - - notchless homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050522-321]
21. wasf3 wasf3 3287 0.925 0.925 - - - - - - - -
22. slc25a25b ENSDARG00000035468, ENSDARG00000116184 544 0.923 - - - 0.923 - - - - - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25b [Source:ZFIN;Acc:ZDB-GENE-060526-340]
23. bcs1l ENSDARG00000012295 664 0.922 - - - 0.922 - - - - - BC1 (ubiquinol-cytochrome c reductase) synthesis-like [Source:ZFIN;Acc:ZDB-GENE-040426-938]
24. BX294110.1 ENSDARG00000096875 1761 0.918 - 0.918 - - - - - - -
25. rxrab ENSDARG00000035127 231 0.912 - 0.912 - - - - - - - retinoid x receptor, alpha b [Source:ZFIN;Acc:ZDB-GENE-990415-243]
26. xpa ENSDARG00000038114 543 0.908 - 0.908 - - - - - - - xeroderma pigmentosum, complementation group A [Source:ZFIN;Acc:ZDB-GENE-040426-1205]
27. MAL2 ENSDARG00000077637 152 0.906 - 0.906 - - - - - - - mal, T cell differentiation protein 2 (gene/pseudogene) [Source:ZFIN;Acc:ZDB-GENE-081022-204]
28. tfe3b ENSDARG00000019457, ENSDARG00000111231 507 0.904 - 0.904 - - - - - - - transcription factor binding to IGHM enhancer 3b [Source:ZFIN;Acc:ZDB-GENE-010919-3]
29. rgs20 ENSDARG00000038859 331 0.902 - - - 0.902 - - - - - regulator of G protein signaling 20 [Source:ZFIN;Acc:ZDB-GENE-040718-128]
30. C3H16orf13 C3H16orf13 652 0.896 - - - 0.896 - - - - -
31. snap29 ENSDARG00000038518 1609 0.894 - - - 0.894 - - - - - synaptosomal-associated protein 29 [Source:ZFIN;Acc:ZDB-GENE-041111-226]
32. adora2aa ENSDARG00000033706, ENSDARG00000114856 144 0.894 - 0.894 - - - - - - - adenosine A2a receptor a [Source:ZFIN;Acc:ZDB-GENE-080723-28]
33. LDLRAD4 LDLRAD4 1237 0.893 - - - 0.893 - - - - -
34. RANBP2 ENSDARG00000093125 1854 0.892 - - - 0.892 - - - - - RAN binding protein 2 [Source:HGNC Symbol;Acc:HGNC:9848]
35. polr1c ENSDARG00000039400 606 0.892 - 0.892 - - - - - - - RNA polymerase I and III subunit C [Source:ZFIN;Acc:ZDB-GENE-040426-1495]
36. tango6 ENSDARG00000034001 203 0.891 - 0.891 - - - - - - - transport and golgi organization 6 homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050419-237]
37. mapre1a ENSDARG00000042927 164 0.891 - 0.891 - - - - - - - microtubule-associated protein, RP/EB family, member 1a [Source:ZFIN;Acc:ZDB-GENE-030131-6067]
38. nek2 ENSDARG00000005619 273 0.888 - 0.888 - - - - - - - NIMA-related kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-752]
39. DHX35 ENSDARG00000063419 602 0.888 - - - 0.888 - - - - - DEAH-box helicase 35 [Source:HGNC Symbol;Acc:HGNC:15861]
40. BX571714.2 BX571714.2 1344 0.887 - 0.887 - - - - - - -
41. pemt ENSDARG00000103614 474 0.887 - 0.887 - - - - - - - phosphatidylethanolamine N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-040426-719]
42. SEMA6B_1 SEMA6B_1 430 0.885 - 0.885 - - - - - - -
43. si:ch211-181d7.3 ENSDARG00000068621 87 0.885 - 0.885 - - - - - - - si:ch211-181d7.3 [Source:ZFIN;Acc:ZDB-GENE-121214-30]
44. arhgef18b ENSDARG00000042308 298 0.884 - 0.884 - - - - - - - rho/rac guanine nucleotide exchange factor (GEF) 18b [Source:ZFIN;Acc:ZDB-GENE-070705-462]
45. rbm22 ENSDARG00000010238 523 0.884 - 0.884 - - - - - - - RNA binding motif protein 22 [Source:ZFIN;Acc:ZDB-GENE-040426-2298]
46. znf395b ENSDARG00000024195 342 0.884 - - - 0.884 - - - - - zinc finger protein 395b [Source:ZFIN;Acc:ZDB-GENE-041001-193]
47. pnkd ENSDARG00000071032 447 0.882 - - - 0.882 - - - - - PNKD, MBL domain containing [Source:ZFIN;Acc:ZDB-GENE-050208-278]
48. ankrd45 ENSDARG00000011326 62 0.882 0.882 - - - - - - - - ankyrin repeat domain 45 [Source:ZFIN;Acc:ZDB-GENE-050522-311]
49. snupn ENSDARG00000008395 507 0.881 - - - 0.881 - - - - - snurportin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3464]
50. shc2 ENSDARG00000062080, ENSDARG00000111448 426 0.879 - 0.879 - - - - - - - SHC (Src homology 2 domain containing) transforming protein 2 [Source:ZFIN;Acc:ZDB-GENE-050208-666]
51. rbbp5 ENSDARG00000042147 702 0.877 - 0.877 - - - - - - - retinoblastoma binding protein 5 [Source:ZFIN;Acc:ZDB-GENE-040426-886]
52. zgc:123349 zgc:123349 730 0.876 - 0.876 - - - - - - -
53. srfbp1 ENSDARG00000075323 2262 0.876 - 0.876 - - - - - - - serum response factor binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1991]
54. gramd1a ENSDARG00000076689 1148 0.874 - 0.874 - - - - - - - GRAM domain containing 1A [Source:ZFIN;Acc:ZDB-GENE-060503-688]
55. POLR2H ENSDARG00000038505 2031 0.874 - 0.874 - - - - - - - info polymerase (RNA) II (DNA directed) polypeptide H [Source:ZFIN;Acc:ZDB-GENE-050417-66]
56. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 0.872 - - - 0.872 - - - - - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
57. ttc19 ENSDARG00000074435 249 0.872 - 0.872 - - - - - - - tetratricopeptide repeat domain 19 [Source:ZFIN;Acc:ZDB-GENE-070912-490]
58. si:ch211-113e8.11 ENSDARG00000076585 721 0.871 - - - 0.871 - - - - - si:ch211-113e8.11 [Source:ZFIN;Acc:ZDB-GENE-090313-12]
59. usp10 ENSDARG00000103422 4247 0.87 - 0.870 - - - - - - - ubiquitin specific peptidase 10 [Source:ZFIN;Acc:ZDB-GENE-030219-132]
60. rnpc3 ENSDARG00000011247 778 0.869 - 0.869 - - - - - - - RNA-binding region (RNP1, RRM) containing 3 [Source:ZFIN;Acc:ZDB-GENE-060312-35]
61. nupl1 nupl1 1100 0.866 - 0.866 - - - - - - -
62. ctbp2 ctbp2 3255 0.865 - 0.865 - - - - - - -
63. FAM149B1 ENSDARG00000061215 273 0.864 0.864 - - - - - - - - family with sequence similarity 149, member B1 [Source:ZFIN;Acc:ZDB-GENE-070112-2102]
64. mta3 ENSDARG00000054903, ENSDARG00000113436 353 0.863 - 0.863 - - - - - - - metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
65. kif3b ENSDARG00000101120 1158 0.862 - 0.862 - - - - - - - kinesin family member 3B [Source:ZFIN;Acc:ZDB-GENE-050119-3]
66. rpp21 ENSDARG00000043404, ENSDARG00000109965 469 0.862 - 0.862 - - - - - - - ribonuclease P 21 subunit [Source:ZFIN;Acc:ZDB-GENE-040801-37]
67. cops4 ENSDARG00000043732 1508 0.86 - 0.860 - - - - - - - COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) [Source:ZFIN;Acc:ZDB-GENE-030131-4317]
68. hmbox1a ENSDARG00000027082 2569 0.859 - - - 0.859 - - - - - homeobox containing 1a [Source:ZFIN;Acc:ZDB-GENE-050913-89]
69. metap1d ENSDARG00000019715, ENSDARG00000112086 236 0.857 - - - 0.857 - - - - - methionyl aminopeptidase type 1D (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-050522-71]
70. ankfy1 ENSDARG00000061013, ENSDARG00000111387 952 0.857 - - - 0.857 - - - - - ankyrin repeat and FYVE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041222-1]
71. CYP27B1 ENSDARG00000045015 119 0.857 - 0.857 - - - - - - - cytochrome P450, family 27, subfamily B, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-111005-2]
72. BX321921.1 BX321921.1 525 0.855 - 0.855 - - - - - - -
73. magi1b ENSDARG00000003169 2056 0.855 - - - 0.855 - - - - - membrane associated guanylate kinase, WW and PDZ domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5110]
74. rfxap ENSDARG00000076891 1299 0.855 - 0.855 - - - - - - - regulatory factor X-associated protein [Source:ZFIN;Acc:ZDB-GENE-091204-321]
75. brdt ENSDARG00000102802 1067 0.855 - 0.855 - - - - - - - bromodomain, testis-specific [Source:ZFIN;Acc:ZDB-GENE-030131-5928]
76. abcb8 ENSDARG00000056672 589 0.854 - 0.854 - - - - - - - ATP-binding cassette, sub-family B (MDR/TAP), member 8 [Source:ZFIN;Acc:ZDB-GENE-050410-6]
77. b3gnt3.4 ENSDARG00000058100 117 0.854 - 0.854 - - - - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3, tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-030131-8875]
78. si:dkey-219c3.2 ENSDARG00000075805 619 0.853 - - - 0.853 - - - - - si:dkey-219c3.2 [Source:ZFIN;Acc:ZDB-GENE-090313-238]
79. THEM6_1 ENSDARG00000103914 469 0.851 - 0.851 - - - - - - - thioesterase superfamily member 6 [Source:HGNC Symbol;Acc:HGNC:29656]
80. si:ch211-214e3.5 ENSDARG00000074270 755 0.851 - 0.851 - - - - - - - si:ch211-214e3.5 [Source:ZFIN;Acc:ZDB-GENE-050208-19]
81. ACVR2B 6615 0.851 0.851 - - - - - - - - activin A receptor, type IIB
82. pdcd2l ENSDARG00000002754 417 0.851 - 0.851 - - - - - - - programmed cell death 2-like [Source:ZFIN;Acc:ZDB-GENE-040426-967]
83. dnajb9b ENSDARG00000016886 270 0.851 - 0.851 - - - - - - - DnaJ (Hsp40) homolog, subfamily B, member 9b [Source:ZFIN;Acc:ZDB-GENE-050522-76]
84. itgb6 ENSDARG00000002494 559 0.851 - 0.851 - - - - - - - integrin, beta 6 [Source:ZFIN;Acc:ZDB-GENE-100812-2]
85. FAM210A FAM210A 437 0.847 - 0.847 - - - - - - -
86. hirip3 ENSDARG00000027749, ENSDARG00000115688 5875 0.846 - 0.846 - - - - - - - HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]
87. hat1 ENSDARG00000034916 5712 0.845 - 0.845 - - - - - - - histone acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-99]
88. si:ch211-51c14.1 ENSDARG00000054645, ENSDARG00000110953 2434 0.845 - 0.845 - - - - - - - si:ch211-51c14.1 [Source:ZFIN;Acc:ZDB-GENE-120215-48]
89. osr2 ENSDARG00000038006 360 0.845 - 0.845 - - - - - - - odd-skipped related transciption factor 2 [Source:ZFIN;Acc:ZDB-GENE-050417-183]
90. lzic ENSDARG00000055899 638 0.845 - - - 0.845 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:ZFIN;Acc:ZDB-GENE-040718-342]
91. dlb ENSDARG00000004232 5120 0.845 0.845 - - - - - - - - deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
92. raph1 raph1 442 0.844 - 0.844 - - - - - - -
93. dcps ENSDARG00000009862 571 0.843 - 0.843 - - - - - - - decapping enzyme, scavenger [Source:ZFIN;Acc:ZDB-GENE-040311-1]
94. rtn1b ENSDARG00000021143 1682 0.842 - - - 0.842 - - - - - reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
95. vps26b ENSDARG00000015823, ENSDARG00000116682 1023 0.84 - - - 0.840 - - - - - VPS26, retromer complex component B [Source:ZFIN;Acc:ZDB-GENE-040426-2699]
96. RBM7 ENSDARG00000020841 1203 0.84 - 0.840 - - - - - - - RNA binding motif protein 7 [Source:ZFIN;Acc:ZDB-GENE-030131-6724]
97. EFNA2 EFNA2 640 0.84 - - - 0.840 - - - - -
98. zgc:112982 ENSDARG00000001829, ENSDARG00000110590, ENSDARG00000111057 2330 0.84 - 0.840 - - - - - - - zgc:112982 [Source:ZFIN;Acc:ZDB-GENE-050306-55]
99. si:dkeyp-52c3.2 ENSDARG00000070516 92 0.839 - 0.839 - - - - - - - si:dkeyp-52c3.2 [Source:ZFIN;Acc:ZDB-GENE-110411-46]
100. PREB ENSDARG00000101602 626 0.837 - 0.837 - - - - - - - prolactin regulatory element binding [Source:ZFIN;Acc:ZDB-GENE-040718-385]

There are 849 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA