Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RIPPLY3

Gene Name Gene ID Reads Annotation
RIPPLY3 1380 ripply transcriptional repressor 3











Genes with expression patterns similar to RIPPLY3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RIPPLY3 1380 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 ripply transcriptional repressor 3
2. PCP4 ENSGALG00000022819 880 1.517 - - 0.808 - - 0.709 - - - - Purkinje cell protein 4 [Source:NCBI gene;Acc:771220]
3. MT1 MT1 218 1.504 - - 0.800 - - - - 0.704 - -
4. ST6GAL1 ENSGALG00000005550 20 1.437 - - - - - - 0.718 - - 0.719 ST6 beta-galactoside alpha-2,6-sialyltransferase 1 [Source:NCBI gene;Acc:396169]
5. PDCD4 ENSGALG00000008700 574 0.901 - - 0.901 - - - - - - - programmed cell death 4 [Source:NCBI gene;Acc:374191]
6. TRANK1 ENSGALG00000037629 2268 0.885 - - 0.885 - - - - - - - tetratricopeptide repeat and ankyrin repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:29011]
7. NAT9 ENSGALG00000007723 2098 0.884 - - 0.884 - - - - - - - N-acetyltransferase 9 (putative), transcript variant X7
8. CTSO ENSGALG00000009373 4186 0.879 - - 0.879 - - - - - - - cathepsin O [Source:NCBI gene;Acc:422410]
9. SNX2 ENSGALG00000005337 590 0.876 - - 0.876 - - - - - - - sorting nexin 2 [Source:NCBI gene;Acc:426797]
10. PTPN5 ENSGALG00000006368 440 0.876 - - 0.876 - - - - - - - protein tyrosine phosphatase, non-receptor type 5 [Source:HGNC Symbol;Acc:HGNC:9657]
11. PVALB1 PVALB1 267 0.873 - - 0.873 - - - - - - -
12. ZC3H13 ENSGALG00000016984 21043 0.871 - - 0.871 - - - - - - - zinc finger CCCH-type containing 13 [Source:HGNC Symbol;Acc:HGNC:20368]
13. NLGN1 ENSGALG00000040938 651 0.871 - - 0.871 - - - - - - - neuroligin 1 [Source:NCBI gene;Acc:424980]
14. AGPAT9 AGPAT9 1823 0.867 - - 0.867 - - - - - - -
15. WDR60 1631 0.866 - - 0.866 - - - - - - - WD repeat domain 60, transcript variant X4
16. CPT1A ENSGALG00000007077 3199 0.863 - - 0.863 - - - - - - - carnitine palmitoyltransferase 1A [Source:NCBI gene;Acc:423118]
17. FAM26E 37 0.857 - - - - - - - 0.857 - - family with sequence similarity 26 member E
18. TMEM200C ENSGALG00000030210 1434 0.857 - - 0.857 - - - - - - - transmembrane protein 200C [Source:HGNC Symbol;Acc:HGNC:37208]
19. DLX5 ENSGALG00000009129 1395 0.855 - - 0.855 - - - - - - - distal-less homeobox 5 [Source:NCBI gene;Acc:373969]
20. MANEA ENSGALG00000015590 2286 0.854 - - 0.854 - - - - - - - mannosidase endo-alpha
21. C-MET C-MET 1650 0.854 - - 0.854 - - - - - - -
22. FAM178A FAM178A 2738 0.848 - - 0.848 - - - - - - -
23. WBSCR17 581 0.848 - - 0.848 - - - - - - - Williams-Beuren syndrome chromosome region 17, transcript variant X1
24. FAM211B FAM211B 3808 0.845 - - 0.845 - - - - - - -
25. S100A11 ENSGALG00000036711 23454 0.841 - - 0.841 - - - - - - - S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
26. ENSGALG00000006740 ENSGALG00000006740 30 0.838 - - - - - - - 0.838 - -
27. TTC1 ENSGALG00000001429 1866 0.838 - - 0.838 - - - - - - - tetratricopeptide repeat domain 1 [Source:HGNC Symbol;Acc:HGNC:12391]
28. UBE2V1 ENSGALG00000008015 17947 0.837 - - 0.837 - - - - - - - ubiquitin conjugating enzyme E2 V1 [Source:NCBI gene;Acc:100538349]
29. LDHD ENSGALG00000023828 60 0.836 - - - - - - - 0.836 - - lactate dehydrogenase D [Source:HGNC Symbol;Acc:HGNC:19708]
30. SCPEP1 ENSGALG00000003185 2322 0.835 - - 0.835 - - - - - - - serine carboxypeptidase 1 [Source:NCBI gene;Acc:417403]
31. DLG3 ENSGALG00000041900 3016 0.834 - - 0.834 - - - - - - - discs large MAGUK scaffold protein 3 [Source:HGNC Symbol;Acc:HGNC:2902]
32. BARX2B BARX2B 1983 0.832 - - 0.832 - - - - - - -
33. COL6A1 ENSGALG00000005974 1991 0.832 - - 0.832 - - - - - - - collagen type VI alpha 1 chain [Source:NCBI gene;Acc:396000]
34. DEPDC5 ENSGALG00000006766 1592 0.831 - - 0.831 - - - - - - - DEP domain containing 5, transcript variant X6
35. DBR1 ENSGALG00000043797 1896 0.83 - - 0.830 - - - - - - - debranching RNA lariats 1 [Source:NCBI gene;Acc:429118]
36. FAM114A2 ENSGALG00000004068 2970 0.83 - - 0.830 - - - - - - - family with sequence similarity 114 member A2 [Source:HGNC Symbol;Acc:HGNC:1333]
37. METTL6 ENSGALG00000040665 4467 0.828 - - 0.828 - - - - - - - methyltransferase like 6 [Source:HGNC Symbol;Acc:HGNC:28343]
38. SYNCRIP ENSGALG00000015830 30555 0.827 - - 0.827 - - - - - - - synaptotagmin binding cytoplasmic RNA interacting protein [Source:NCBI gene;Acc:421831]
39. IGDCC4 ENSGALG00000007410 5457 0.823 - - 0.823 - - - - - - - immunoglobulin superfamily DCC subclass member 4 [Source:HGNC Symbol;Acc:HGNC:13770]
40. TSEN2 ENSGALG00000004981 1929 0.822 - - 0.822 - - - - - - - tRNA splicing endonuclease subunit 2 [Source:NCBI gene;Acc:415965]
41. DBI ENSGALG00000012112 6910 0.822 - - 0.822 - - - - - - - diazepam binding inhibitor, acyl-CoA binding protein [Source:NCBI gene;Acc:395263]
42. DDX18 ENSGALG00000012147 12463 0.822 - - 0.822 - - - - - - - DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]
43. SURF2 ENSGALG00000003181 3500 0.821 - - 0.821 - - - - - - - surfeit 2 [Source:NCBI gene;Acc:417156]
44. SLC4A4 ENSGALG00000031105 534 0.818 - - 0.818 - - - - - - - solute carrier family 4 member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
45. XPC ENSGALG00000006357 2484 0.818 - - 0.818 - - - - - - - XPC complex subunit, DNA damage recognition and repair factor [Source:HGNC Symbol;Acc:HGNC:12816]
46. ARFRP1 ENSGALG00000006101 3743 0.816 - - 0.816 - - - - - - - ADP ribosylation factor related protein 1 [Source:HGNC Symbol;Acc:HGNC:662]
47. FBXO34 ENSGALG00000032563 656 0.815 - - 0.815 - - - - - - - F-box protein 34 [Source:NCBI gene;Acc:423554]
48. SEC24A ENSGALG00000006417 1805 0.813 - - 0.813 - - - - - - - Gallus gallus SEC24 homolog A, COPII coat complex component (SEC24A), mRNA. [Source:RefSeq mRNA;Acc:NM_001321593]
49. TRIM45 ENSGALG00000014818 1258 0.812 - - 0.812 - - - - - - - tripartite motif containing 45 [Source:HGNC Symbol;Acc:HGNC:19018]
50. SLC25A24 ENSGALG00000001938 3671 0.811 - - 0.811 - - - - - - - solute carrier family 25 member 24 [Source:HGNC Symbol;Acc:HGNC:20662]
51. SECISBP2 ENSGALG00000010694 6990 0.811 - - 0.811 - - - - - - - SECIS binding protein 2 [Source:HGNC Symbol;Acc:HGNC:30972]
52. MRPS27 ENSGALG00000015002 6541 0.811 - - 0.811 - - - - - - - mitochondrial ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:14512]
53. INVS ENSGALG00000013441 1123 0.811 - - 0.811 - - - - - - - inversin [Source:NCBI gene;Acc:395234]
54. ATP2B4 ENSGALG00000003601 3746 0.81 - - 0.810 - - - - - - - ATPase plasma membrane Ca2+ transporting 4 [Source:HGNC Symbol;Acc:HGNC:817]
55. PLEKHG5 ENSGALG00000027476 42 0.81 - - 0.810 - - - - - - - pleckstrin homology and RhoGEF domain containing G5 [Source:HGNC Symbol;Acc:HGNC:29105]
56. CEP70 ENSGALG00000012087 7992 0.809 - - 0.809 - - - - - - - centrosomal protein 70 [Source:HGNC Symbol;Acc:HGNC:29972]
57. PTDSS1 ENSGALG00000030185 5515 0.809 - - 0.809 - - - - - - - phosphatidylserine synthase 1 [Source:NCBI gene;Acc:428374]
58. CHCHD4 ENSGALG00000006328 5860 0.807 - - 0.807 - - - - - - - coiled-coil-helix-coiled-coil-helix domain containing 4 [Source:NCBI gene;Acc:416037]
59. POMC ENSGALG00000016600 99 0.806 - - 0.806 - - - - - - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
60. MGMT ENSGALG00000042949 53 0.806 - - 0.806 - - - - - - - O-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]
61. IP6K1 ENSGALG00000002510 827 0.806 - - 0.806 - - - - - - - inositol hexakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:18360]
62. RHOC ENSGALG00000001569 53 0.806 - - 0.806 - - - - - - - ras homolog family member C [Source:NCBI gene;Acc:395869]
63. GRIK3 ENSGALG00000002098 111 0.805 - - 0.805 - - - - - - - glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
64. KIAA0195 KIAA0195 48 0.805 - - 0.805 - - - - - - -
65. ADAMTS2 ENSGALG00000032974 141 0.805 - - 0.805 - - - - - - - ADAM metallopeptidase with thrombospondin type 1 motif 2 [Source:HGNC Symbol;Acc:HGNC:218]
66. ENSGALG00000023180 ENSGALG00000023180 83 0.804 - - 0.804 - - - - - - -
67. TMEM97 ENSGALG00000005702 2037 0.802 - - 0.802 - - - - - - - transmembrane protein 97 [Source:HGNC Symbol;Acc:HGNC:28106]
68. ETV4 ENSGALG00000036678 2424 0.802 - - 0.802 - - - - - - - ETS variant 4 [Source:HGNC Symbol;Acc:HGNC:3493]
69. C5H14ORF166 C5H14ORF166 24176 0.802 - - 0.802 - - - - - - -
70. RRP12 ENSGALG00000041331 3369 0.801 - - 0.801 - - - - - - - ribosomal RNA processing 12 homolog [Source:NCBI gene;Acc:423845]
71. GOLGA2 ENSGALG00000004881 677 0.801 - - 0.801 - - - - - - - golgin A2, transcript variant X7
72. PCMTD2 ENSGALG00000005901 1833 0.8 - - 0.800 - - - - - - - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15882]
73. SAMD12 ENSGALG00000029664 20 0.799 - - - - - - - - - 0.799 sterile alpha motif domain containing 12 [Source:HGNC Symbol;Acc:HGNC:31750]
74. LGALS3 ENSGALG00000012173 3306 0.799 - - 0.799 - - - - - - - galectin 3 [Source:NCBI gene;Acc:373917]
75. ZEB2 ENSGALG00000040465 315 0.799 - - 0.799 - - - - - - - Gallus gallus zinc finger E-box binding homeobox 2 (ZEB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001318466]
76. ARFIP2 ENSGALG00000037839 4831 0.798 - - 0.798 - - - - - - - ADP ribosylation factor interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:17160]
77. LHFP 167 0.798 - - 0.798 - - - - - - - lipoma HMGIC fusion partner
78. RAB3B ENSGALG00000010567 894 0.798 - - 0.798 - - - - - - - RAB3B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9778]
79. CHCHD6 ENSGALG00000006056 6121 0.797 - - 0.797 - - - - - - - coiled-coil-helix-coiled-coil-helix domain containing 6 [Source:HGNC Symbol;Acc:HGNC:28184]
80. PELI1 ENSGALG00000008837 11561 0.797 - - 0.797 - - - - - - - pellino E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:421279]
81. GATAD2A ENSGALG00000042900 6337 0.796 - - 0.796 - - - - - - - GATA zinc finger domain containing 2A [Source:NCBI gene;Acc:420109]
82. CAMK2D ENSGALG00000041635 3384 0.795 - - 0.795 - - - - - - - calcium/calmodulin dependent protein kinase II delta [Source:NCBI gene;Acc:422688]
83. ATP2B2 ENSGALG00000030908 584 0.795 - - 0.795 - - - - - - - ATPase plasma membrane Ca2+ transporting 2 [Source:HGNC Symbol;Acc:HGNC:815]
84. SDCBP ENSGALG00000015436 1228 0.795 - - 0.795 - - - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
85. LYPD6B ENSGALG00000028759 831 0.795 - - 0.795 - - - - - - - LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:HGNC:27018]
86. CDV3 ENSGALG00000032316 693 0.792 - - 0.792 - - - - - - - CDV3 homolog [Source:NCBI gene;Acc:420693]
87. CASP9 ENSGALG00000001366 1356 0.792 - - 0.792 - - - - - - - caspase 9 [Source:HGNC Symbol;Acc:HGNC:1511]
88. NCAPD3 ENSGALG00000001491 221 0.792 - - 0.792 - - - - - - - non-SMC condensin II complex subunit D3, transcript variant X3
89. C8H1ORF52 C8H1ORF52 118 0.791 - - 0.791 - - - - - - -
90. CASP1 ENSGALG00000001049 1067 0.79 - - 0.790 - - - - - - - caspase 1, transcript variant X2
91. SIDT2 ENSGALG00000030139 1924 0.789 - - 0.789 - - - - - - - SID1 transmembrane family member 2, transcript variant X2
92. INTS9 ENSGALG00000016631 742 0.788 - - 0.788 - - - - - - - integrator complex subunit 9 [Source:NCBI gene;Acc:422023]
93. AP3M1 ENSGALG00000005070 712 0.787 - - 0.787 - - - - - - - adaptor related protein complex 3 subunit mu 1 [Source:NCBI gene;Acc:423736]
94. ZNF423 ENSGALG00000003891 103 0.786 - - 0.786 - - - - - - - zinc finger protein 423 [Source:HGNC Symbol;Acc:HGNC:16762]
95. PKP4 ENSGALG00000012561 3087 0.785 - - 0.785 - - - - - - - plakophilin 4 [Source:NCBI gene;Acc:424328]
96. RPUSD1 ENSGALG00000005315 651 0.785 - - 0.785 - - - - - - - RNA pseudouridylate synthase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14173]
97. LMO4 ENSGALG00000006252 3686 0.785 - - 0.785 - - - - - - - LIM domain only 4 [Source:NCBI gene;Acc:373901]
98. ACTL6A ENSGALG00000009061 13013 0.784 - - 0.784 - - - - - - - actin like 6A [Source:HGNC Symbol;Acc:HGNC:24124]
99. MAN1A1 ENSGALG00000014878 1061 0.784 - - 0.784 - - - - - - - mannosidase alpha class 1A member 1 [Source:HGNC Symbol;Acc:HGNC:6821]
100. ST3GAL1 ENSGALG00000037773 2014 0.784 - - 0.784 - - - - - - - ST3 beta-galactoside alpha-2,3-sialyltransferase 1 [Source:NCBI gene;Acc:396140]

There are 201 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA