Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RFX3

Gene Name Gene ID Reads Annotation
RFX3 ENSGALG00000010179 305 regulatory factor X3 [Source:HGNC Symbol;Acc:HGNC:9984]











Genes with expression patterns similar to RFX3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RFX3 ENSGALG00000010179 305 8 - - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 regulatory factor X3 [Source:HGNC Symbol;Acc:HGNC:9984]
2. ENSGALG00000026309 ENSGALG00000026309 360 1.841 - - - - - - - 0.999 - 0.842
3. ENSGALG00000021835 ENSGALG00000021835 424 1.77 - - - - - - - 1.000 - 0.770
4. SCARF1 2103 1.769 - - - - - - - 0.980 - 0.789 scavenger receptor class F member 1, transcript variant X2
5. RAD54L2 ENSGALG00000003243 187 1.759 - - - - - - - - 0.855 0.904 RAD54-like 2 (S. cerevisiae) [Source:NCBI gene;Acc:415933]
6. WBP4 ENSGALG00000016949 5858 1.706 - - - - - - - 0.982 0.724 - WW domain binding protein 4 [Source:NCBI gene;Acc:418829]
7. MOB2 ENSGALG00000030499 3658 1.664 - - - - - - - 0.926 - 0.738 MOB kinase activator 2 [Source:HGNC Symbol;Acc:HGNC:24904]
8. MPDZ ENSGALG00000005846 3179 1.619 - - - - - - - 0.915 - 0.704 multiple PDZ domain protein [Source:NCBI gene;Acc:427360]
9. DIAPH1 DIAPH1 357 1.614 - - - - - - - - 0.797 0.817
10. HK1 ENSGALG00000004222 10733 1.443 - - - - - - - 0.736 0.707 - hexokinase 1 [Source:NCBI gene;Acc:373889]
11. ZNF148 ENSGALG00000012049 365 1 - - - - - - - 1.000 - - zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
12. AGO1 ENSGALG00000002249 125 1 - - - - - - - 1.000 - - argonaute 1, RISC catalytic component [Source:NCBI gene;Acc:428222]
13. FRYL ENSGALG00000014103 314 1 - - - - - - - 1.000 - - FRY like transcription coactivator [Source:HGNC Symbol;Acc:HGNC:29127]
14. CHGA ENSGALG00000010820 1028 1 - - - - - - - 1.000 - - chromogranin A [Source:HGNC Symbol;Acc:HGNC:1929]
15. GMFB ENSGALG00000012208 894 0.999 - - - - - - - 0.999 - - glia maturation factor beta [Source:NCBI gene;Acc:423560]
16. PRKAG2 ENSGALG00000006219 504 0.999 - - - - - - - 0.999 - - protein kinase AMP-activated non-catalytic subunit gamma 2 [Source:NCBI gene;Acc:420435]
17. ENSGALG00000016701 ENSGALG00000016701 418 0.999 - - - - - - - 0.999 - -
18. gga-mir-6681 ENSGALG00000027840 546 0.999 - - - - - - - 0.999 - - gga-mir-6681 [Source:miRBase;Acc:MI0022502]
19. LRRC42 ENSGALG00000010743 384 0.998 - - - - - - - 0.998 - - leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:HGNC:28792]
20. N4BP2L1 ENSGALG00000017072 1371 0.998 - - - - - - - 0.998 - - NEDD4 binding protein 2 like 1, transcript variant X2
21. BIN1 ENSGALG00000011541 2273 0.998 - - - - - - - 0.998 - - bridging integrator 1 [Source:NCBI gene;Acc:424228]
22. NGFR ENSGALG00000035950 13452 0.998 - - - - - - - 0.998 - - nerve growth factor receptor [Source:NCBI gene;Acc:425805]
23. CLEC3B ENSGALG00000030969 363 0.998 - - - - - - - 0.998 - - C-type lectin domain family 3 member B [Source:NCBI gene;Acc:395386]
24. GHR_1 ENSGALG00000014855 198 0.996 - - - - - - - 0.996 - - growth hormone receptor [Source:NCBI gene;Acc:408184]
25. SZT2 ENSGALG00000028561 255 0.996 - - - - - - - 0.996 - - seizure threshold 2 homolog (mouse) [Source:NCBI gene;Acc:424566]
26. C16orf93 C16orf93 3351 0.996 - - - - - - - 0.996 - -
27. xcc-b100_1894L ENSGALG00000007564 462 0.996 - - - - - - - 0.996 - - UPF0061 protein xcc-b100_1894-like
28. LMO4 ENSGALG00000006252 3686 0.995 - - - - - - - 0.995 - - LIM domain only 4 [Source:NCBI gene;Acc:373901]
29. TBC1D16 ENSGALG00000007054 2324 0.994 - - - - - - - 0.994 - - TBC1 domain family member 16 [Source:HGNC Symbol;Acc:HGNC:28356]
30. ENSGALG00000025773 ENSGALG00000025773 977 0.993 - - - - - - - 0.993 - -
31. GPR155 ENSGALG00000014209 1281 0.992 - - - - - - - 0.992 - - G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
32. ALDH6 ALDH6 771 0.992 - - - - - - - 0.992 - -
33. ZC3H11A ENSGALG00000000541 2712 0.991 - - - - - - - 0.991 - - zinc finger CCCH-type containing 11A [Source:NCBI gene;Acc:421172]
34. SENP2 ENSGALG00000031128 1162 0.991 - - - - - - - 0.991 - - SUMO specific peptidase 2 [Source:HGNC Symbol;Acc:HGNC:23116]
35. YY1 ENSGALG00000017388 1933 0.991 - - - - - - - 0.991 - - YY1 transcription factor [Source:NCBI gene;Acc:423455]
36. MAN1A1 ENSGALG00000014878 1061 0.99 - - - - - - - 0.990 - - mannosidase alpha class 1A member 1 [Source:HGNC Symbol;Acc:HGNC:6821]
37. C7H2ORF76 ENSGALG00000012113 1947 0.989 - - - - - - - 0.989 - - chromosome 7 open reading frame, human C2orf76 [Source:NCBI gene;Acc:424274]
38. CCNI ENSGALG00000011457 3203 0.989 - - - - - - - 0.989 - - cyclin I [Source:HGNC Symbol;Acc:HGNC:1595]
39. TBC1D19 ENSGALG00000029673 1868 0.989 - - - - - - - 0.989 - - TBC1 domain family member 19 [Source:HGNC Symbol;Acc:HGNC:25624]
40. THAP4 ENSGALG00000006283 1707 0.989 - - - - - - - 0.989 - - THAP domain containing 4 [Source:HGNC Symbol;Acc:HGNC:23187]
41. SIAH2 ENSGALG00000010395 2126 0.988 - - - - - - - 0.988 - - siah E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:10858]
42. CDC37L1 ENSGALG00000014448 2283 0.988 - - - - - - - 0.988 - - cell division cycle 37 like 1 [Source:HGNC Symbol;Acc:HGNC:17179]
43. IBA57 ENSGALG00000005328 4362 0.988 - - - - - - - 0.988 - - IBA57 homolog, iron-sulfur cluster assembly [Source:NCBI gene;Acc:420396]
44. SLC37A4 ENSGALG00000007716 2263 0.988 - - - - - - - 0.988 - - solute carrier family 37 member 4 [Source:HGNC Symbol;Acc:HGNC:4061]
45. PNPT1 ENSGALG00000043545 1306 0.988 - - - - - - - 0.988 - - polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]
46. BOC ENSGALG00000015152 4868 0.987 - - - - - - - 0.987 - - BOC cell adhesion associated, oncogene regulated [Source:HGNC Symbol;Acc:HGNC:17173]
47. MED20 ENSGALG00000003474 4583 0.985 - - - - - - - 0.985 - - mediator complex subunit 20 [Source:NCBI gene;Acc:419926]
48. SLC4A3 ENSGALG00000011224 2161 0.984 - - - - - - - 0.984 - - solute carrier family 4 member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
49. COQ5 ENSGALG00000007185 5614 0.983 - - - - - - - 0.983 - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
50. ATP6V0E2 ENSGALG00000020754 2648 0.983 - - - - - - - 0.983 - - ATPase H+ transporting V0 subunit e2 [Source:NCBI gene;Acc:769770]
51. ASAP2 ENSGALG00000016419 1393 0.982 - - - - - - - 0.982 - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
52. CLASP2 ENSGALG00000032647 1821 0.98 - - - - - - - 0.980 - - cytoplasmic linker associated protein 2 [Source:NCBI gene;Acc:420724]
53. KIF3B ENSGALG00000006604 2968 0.98 - - - - - - - 0.980 - - kinesin family member 3B [Source:NCBI gene;Acc:419284]
54. ECHDC3 ENSGALG00000006690 1299 0.977 - - - - - - - 0.977 - - enoyl-CoA hydratase domain containing 3 [Source:NCBI gene;Acc:419098]
55. TTC17 ENSGALG00000039558 3301 0.975 - - - - - - - 0.975 - - tetratricopeptide repeat domain 17
56. GTSE1 ENSGALG00000004897 2865 0.974 - - - - - - - 0.974 - - G2 and S-phase expressed 1 [Source:NCBI gene;Acc:425204]
57. PDCD7 ENSGALG00000021027 3807 0.974 - - - - - - - 0.974 - - programmed cell death 7 [Source:HGNC Symbol;Acc:HGNC:8767]
58. TRAPPC12 ENSGALG00000016387 2593 0.973 - - - - - - - 0.973 - - trafficking protein particle complex 12 [Source:HGNC Symbol;Acc:HGNC:24284]
59. FBXL7 ENSGALG00000031947 2480 0.973 - - - - - - - 0.973 - - F-box and leucine rich repeat protein 7 [Source:HGNC Symbol;Acc:HGNC:13604]
60. ACTR3B ENSGALG00000006292 2235 0.972 - - - - - - - 0.972 - - ARP3 actin related protein 3 homolog B, transcript variant X1
61. CAMK2G ENSGALG00000005088 5037 0.97 - - - - - - - 0.970 - - calcium/calmodulin dependent protein kinase II gamma [Source:HGNC Symbol;Acc:HGNC:1463]
62. ST14 ENSGALG00000001331 1655 0.97 - - - - - - - 0.970 - - suppression of tumorigenicity 14 [Source:HGNC Symbol;Acc:HGNC:11344]
63. IDS ENSGALG00000009154 1177 0.97 - - - - - - - 0.970 - - iduronate 2-sulfatase [Source:NCBI gene;Acc:422392]
64. ENSGALG00000005785 ENSGALG00000005785 1570 0.968 - - - - - - - 0.968 - -
65. C5H15ORF57 C5H15ORF57 4113 0.968 - - - - - - - 0.968 - -
66. CNOT2 ENSGALG00000010042 7612 0.967 - - - - - - - 0.967 - - CCR4-NOT transcription complex subunit 2 [Source:NCBI gene;Acc:417851]
67. SURF2 ENSGALG00000003181 3500 0.966 - - - - - - - 0.966 - - surfeit 2 [Source:NCBI gene;Acc:417156]
68. PDHX ENSGALG00000033753 2799 0.965 - - - - - - - 0.965 - - pyruvate dehydrogenase complex component X [Source:NCBI gene;Acc:423154]
69. MMP17 3885 0.964 - - - - - - - 0.964 - - matrix metallopeptidase 17
70. TSPAN5 ENSGALG00000012227 8703 0.963 - - - - - - - 0.963 - - tetraspanin 5 [Source:HGNC Symbol;Acc:HGNC:17753]
71. CYB5R3 ENSGALG00000014122 7664 0.963 - - - - - - - 0.963 - - cytochrome b5 reductase 3 [Source:NCBI gene;Acc:418220]
72. BRF1 ENSGALG00000011705 3406 0.961 - - - - - - - 0.961 - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
73. SECISBP2 ENSGALG00000010694 6990 0.96 - - - - - - - 0.960 - - SECIS binding protein 2 [Source:HGNC Symbol;Acc:HGNC:30972]
74. SEMA3C ENSGALG00000040444 5404 0.959 - - - - - - - 0.959 - - semaphorin 3C [Source:NCBI gene;Acc:374090]
75. RBM34 ENSGALG00000029915 5618 0.956 - - - - - - - 0.956 - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
76. POLR1E ENSGALG00000005395 8953 0.955 - - - - - - - 0.955 - - RNA polymerase I subunit E [Source:HGNC Symbol;Acc:HGNC:17631]
77. VDAC2 ENSGALG00000005002 12592 0.955 - - - - - - - 0.955 - - voltage dependent anion channel 2 [Source:NCBI gene;Acc:395498]
78. ABTB1 ENSGALG00000005999 2446 0.953 - - - - - - - 0.953 - - ankyrin repeat and BTB domain containing 1 [Source:NCBI gene;Acc:416026]
79. ENSGALG00000021439 ENSGALG00000021439 628 0.951 - - - - - - - - - 0.951
80. TADA1L TADA1L 6659 0.951 - - - - - - - 0.951 - -
81. CCDC75 CCDC75 4865 0.95 - - - - - - - 0.950 - -
82. FAM160B1 ENSGALG00000031404 3153 0.948 - - - - - - - 0.948 - - family with sequence similarity 160 member B1 [Source:HGNC Symbol;Acc:HGNC:29320]
83. KIAA1551 ENSGALG00000045168 3435 0.943 - - - - - - - 0.943 - - KIAA1551, transcript variant X1
84. HABP4 ENSGALG00000012628 2894 0.941 - - - - - - - 0.941 - - hyaluronan binding protein 4 [Source:NCBI gene;Acc:395444]
85. CLIC4 ENSGALG00000001262 11497 0.941 - - - - - - - 0.941 - - chloride intracellular channel 4 [Source:HGNC Symbol;Acc:HGNC:13518]
86. ECHDC1 ENSGALG00000014828 958 0.935 - - - - - - - - - 0.935 ethylmalonyl-CoA decarboxylase 1 [Source:NCBI gene;Acc:769021]
87. SLC35F6 ENSGALG00000016589 5172 0.931 - - - - - - - 0.931 - - solute carrier family 35 member F6 [Source:HGNC Symbol;Acc:HGNC:26055]
88. POLR3B ENSGALG00000012655 704 0.93 - - - - - - - - - 0.930 Gallus gallus RNA polymerase III subunit B (POLR3B), mRNA. [Source:RefSeq mRNA;Acc:NM_001321490]
89. MED14 ENSGALG00000016238 4685 0.93 - - - - - - - 0.930 - - mediator complex subunit 14 [Source:HGNC Symbol;Acc:HGNC:2370]
90. NKRF ENSGALG00000008645 3531 0.929 - - - - - - - 0.929 - - NFKB repressing factor [Source:NCBI gene;Acc:422370]
91. ENSGALG00000027143 ENSGALG00000027143 23 0.929 - - - - - 0.929 - - - -
92. SUFU ENSGALG00000008096 307 0.929 - - - - - 0.929 - - - - SUFU negative regulator of hedgehog signaling [Source:NCBI gene;Acc:374118]
93. SUPT4H1 ENSGALG00000000944 8675 0.927 - - - - - - - 0.927 - - SPT4 homolog, DSIF elongation factor subunit [Source:NCBI gene;Acc:417470]
94. COQ9 ENSGALG00000001184 10174 0.926 - - - - - - - 0.926 - - coenzyme Q9 [Source:NCBI gene;Acc:415636]
95. PPARG ENSGALG00000004974 62 0.925 - - - - - 0.925 - - - - peroxisome proliferator-activated receptor gamma [Source:NCBI gene;Acc:373928]
96. S100A9 ENSGALG00000024272 103 0.922 - - - - - 0.922 - - - - S100 calcium binding protein A9 [Source:NCBI gene;Acc:426356]
97. CDA ENSGALG00000007382 1544 0.921 - - - - - - - 0.921 - - cytidine deaminase [Source:NCBI gene;Acc:771849]
98. ARF1 ENSGALG00000005393 364 0.919 - - - - - 0.919 - - - - ADP ribosylation factor 1 [Source:NCBI gene;Acc:420398]
99. PAG1 ENSGALG00000034188 9 0.917 - - - - - - - - - 0.917 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 [Source:HGNC Symbol;Acc:HGNC:30043]
100. LANCL3 ENSGALG00000016265 9 0.917 - - - - - - - - - 0.917 LanC like 3 [Source:HGNC Symbol;Acc:HGNC:24767]

There are 416 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA