Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for RFC4

Gene Name Gene ID Reads Annotation
RFC4 ENSDARG00000042458 3694 replication factor C (activator 1) 4 [Source:ZFIN;Acc:ZDB-GENE-040824-3]










Genes with expression patterns similar to RFC4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. RFC4 ENSDARG00000042458 3694 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 replication factor C (activator 1) 4 [Source:ZFIN;Acc:ZDB-GENE-040824-3]
2. tmub2 ENSDARG00000056467, ENSDARG00000109925 100 1.841 - - - 0.886 - - - 0.955 - transmembrane and ubiquitin-like domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030616-254]
3. ccdc41 ccdc41 97 1.805 - - - - - 0.844 - 0.961 -
4. cab39l ENSDARG00000036658 204 1.778 0.823 - - - - - - 0.955 - calcium binding protein 39-like [Source:ZFIN;Acc:ZDB-GENE-041114-204]
5. mpp5a ENSDARG00000006272 1181 1.736 - - - 0.819 - - - 0.917 - membrane protein, palmitoylated 5a (MAGUK p55 subfamily member 5) [Source:ZFIN;Acc:ZDB-GENE-020712-1]
6. myo6a ENSDARG00000044016 847 1.728 - - - 0.792 - - - 0.936 - myosin VIa [Source:ZFIN;Acc:ZDB-GENE-040819-2]
7. nfybb ENSDARG00000045611, ENSDARG00000110926 350 1.723 - - - 0.868 - - - 0.855 - nuclear transcription factor Y, beta b [Source:ZFIN;Acc:ZDB-GENE-050306-25]
8. hs3st1l2 ENSDARG00000035578 279 1.708 0.872 - - 0.836 - - - - - heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2 [Source:ZFIN;Acc:ZDB-GENE-070202-3]
9. bicc1b ENSDARG00000070497 406 1.704 0.808 - - - - - - 0.896 - BicC family RNA binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-080522-3]
10. gfra2a ENSDARG00000042723 592 1.694 - - - 0.862 - - - 0.832 - GDNF family receptor alpha 2a [Source:ZFIN;Acc:ZDB-GENE-040630-1]
11. pou4f1 ENSDARG00000005559 821 1.692 - - - 0.883 - - - 0.809 - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
12. gdf11 ENSDARG00000044924 534 1.68 0.818 - - - - - - 0.862 - growth differentiation factor 11 [Source:ZFIN;Acc:ZDB-GENE-040427-2]
13. fam203a fam203a 570 1.661 - - - 0.893 - 0.768 - - -
14. wdr59 ENSDARG00000088817 1005 1.658 - - - 0.771 - - - 0.887 - WD repeat domain 59 [Source:ZFIN;Acc:ZDB-GENE-120215-187]
15. myo9b ENSDARG00000077410 1956 1.626 0.799 - - 0.827 - - - - - myosin IXb [Source:ZFIN;Acc:ZDB-GENE-030131-938]
16. AL954372.1 ENSDARG00000112499 589 1.612 0.701 - - - - - - 0.911 -
17. CABZ01081897.1 ENSDARG00000110500 253 1.612 - 0.709 - 0.903 - - - - -
18. spry2 ENSDARG00000078308 1200 1.572 0.825 - - 0.747 - - - - - sprouty RTK signaling antagonist 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7038]
19. TTF2 ENSDARG00000104105 564 1.571 0.797 - - - - - 0.774 - - transcription termination factor, RNA polymerase II [Source:ZFIN;Acc:ZDB-GENE-110411-73]
20. SNORA21 SNORA21 547 1.571 - 0.729 - 0.842 - - - - -
21. SERTAD4 ENSDARG00000089795 791 1.567 - - - 0.791 - - - 0.776 - SERTA domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-090313-199]
22. rad17 ENSDARG00000018918 332 1.563 - - - 0.858 - - 0.705 - - RAD17 checkpoint clamp loader component [Source:ZFIN;Acc:ZDB-GENE-040718-409]
23. trpm1b ENSDARG00000103476 369 1.553 0.733 - - 0.820 - - - - - transient receptor potential cation channel, subfamily M, member 1b [Source:ZFIN;Acc:ZDB-GENE-070424-31]
24. LO018102.1 ENSDARG00000079790 234 1.552 0.754 0.798 - - - - - - - phospholipid phosphatase 1-like [Source:NCBI gene;Acc:794598]
25. BX323051.1 ENSDARG00000099065 1758 1.546 - 0.743 - - - - 0.803 - -
26. mcrs1 ENSDARG00000020840 3232 1.522 0.802 - - - - - - 0.720 - microspherule protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2434]
27. slc15a2 ENSDARG00000032010 451 1.521 - - - 0.784 - - 0.737 - - solute carrier family 15 (oligopeptide transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5866]
28. tesk2 ENSDARG00000061450 261 1.493 0.789 - - 0.704 - - - - - testis associated actin remodelling kinase 2 [Source:ZFIN;Acc:ZDB-GENE-070209-68]
29. baxb ENSDARG00000030881 390 1.471 0.730 - - 0.741 - - - - - BCL2 associated X, apoptosis regulator b [Source:ZFIN;Acc:ZDB-GENE-050227-21]
30. DLGAP4 DLGAP4 443 1.453 0.734 - - 0.719 - - - - -
31. celsr2 ENSDARG00000019726, ENSDARG00000094388 4002 1.44 - 0.716 - 0.724 - - - - - cadherin, EGF LAG seven-pass G-type receptor 2 [Source:ZFIN;Acc:ZDB-GENE-070122-2]
32. ttc3 ENSDARG00000086075 2157 1.434 - - - - - 0.733 - 0.701 - tetratricopeptide repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-090313-3]
33. hyal2 hyal2 2205 1.431 0.714 - - - - - 0.717 - -
34. si:dkey-19a16.4 ENSDARG00000071657 190 1.415 0.704 - - 0.711 - - - - - si:dkey-19a16.4 [Source:ZFIN;Acc:ZDB-GENE-050208-652]
35. snrnp200 ENSDARG00000077536, ENSDARG00000114486 4981 1 - - - - 1.000 - - - - small nuclear ribonucleoprotein 200 (U5) [Source:ZFIN;Acc:ZDB-GENE-081105-64]
36. las1l ENSDARG00000062457, ENSDARG00000114475 3987 1 - - - - 1.000 - - - - LAS1-like, ribosome biogenesis factor [Source:ZFIN;Acc:ZDB-GENE-030131-3625]
37. extl3 ENSDARG00000026811 4815 1 - - - - 1.000 - - - - exostosin-like glycosyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-041124-2]
38. BX088708.1 BX088708.1 6503 1 - - - - 1.000 - - - -
39. sesn3 ENSDARG00000015822 5328 1 - - - - 1.000 - - - - sestrin 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2924]
40. lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 1 - - - - 1.000 - - - - LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]
41. rap1a rap1a 5654 1 - - - - 1.000 - - - -
42. ints12 ENSDARG00000091678 3261 1 - - - - 1.000 - - - - integrator complex subunit 12 [Source:ZFIN;Acc:ZDB-GENE-040625-178]
43. CU862021.1 CU862021.1 5925 1 - - - - 1.000 - - - -
44. ddx21 ENSDARG00000063626 6695 1 - - - - 1.000 - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Source:ZFIN;Acc:ZDB-GENE-031113-10]
45. si:ch73-21g5.7 ENSDARG00000093156 9412 0.999 - - - - 0.999 - - - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
46. tox ENSDARG00000032317 9126 0.999 - - - - 0.999 - - - - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
47. CABZ01080098.1 ENSDARG00000110680 10942 0.999 - - - - 0.999 - - - -
48. FP102272.1 FP102272.1 9473 0.999 - - - - 0.999 - - - -
49. hif1al ENSDARG00000100826 18627 0.998 - - - - 0.998 - - - - hypoxia inducible factor 1 subunit alpha, like [Source:ZFIN;Acc:ZDB-GENE-040426-1315]
50. ppm1da ENSDARG00000009273 7713 0.997 - - - - 0.997 - - - - protein phosphatase, Mg2+/Mn2+ dependent, 1Da [Source:ZFIN;Acc:ZDB-GENE-040426-815]
51. cmn ENSDARG00000055527 14039 0.997 - - - - 0.997 - - - - calymmin [Source:ZFIN;Acc:ZDB-GENE-000208-9]
52. ddx39ab ENSDARG00000015111 11619 0.997 - - - - 0.997 - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
53. strap ENSDARG00000007405 6426 0.996 - - - - 0.996 - - - - serine/threonine kinase receptor associated protein [Source:ZFIN;Acc:ZDB-GENE-040426-1110]
54. calm2a ENSDARG00000031427, ENSDARG00000111871 43643 0.995 - - - - 0.995 - - - - calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
55. rpsa ENSDARG00000019181 93440 0.993 - - - - 0.993 - - - - ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
56. rpl38 ENSDARG00000006413 59590 0.99 - - - - 0.990 - - - - ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
57. icn ENSDARG00000009978 85647 0.983 - - - - 0.983 - - - - ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
58. aldob ENSDARG00000053684 30498 0.979 - - - - 0.979 - - - - aldolase b, fructose-bisphosphate [Source:ZFIN;Acc:ZDB-GENE-030131-383]
59. rplp0 ENSDARG00000051783 88740 0.975 - - - - 0.975 - - - - ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
60. manea ENSDARG00000001898 450 0.972 - - - - - - - 0.972 - mannosidase, endo-alpha [Source:ZFIN;Acc:ZDB-GENE-040912-87]
61. rpp30 ENSDARG00000027428 286 0.97 - - - - - - - 0.970 - ribonuclease P/MRP 30 subunit [Source:ZFIN;Acc:ZDB-GENE-050320-45]
62. gdap1l1 ENSDARG00000028628 233 0.97 - - - - - - - 0.970 - ganglioside induced differentiation associated protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-080812-2]
63. si:ch211-271e10.2 ENSDARG00000092667 177 0.968 - - - - - - - 0.968 - si:ch211-271e10.2 [Source:ZFIN;Acc:ZDB-GENE-060526-146]
64. megf8_1 ENSDARG00000079751, ENSDARG00000103934 722 0.968 - - - - - - - 0.968 - multiple EGF-like-domains 8 [Source:ZFIN;Acc:ZDB-GENE-090730-1]
65. FP102801.1_1 FP102801.1_1 238 0.967 - - - - - - - 0.967 -
66. rxfp2b ENSDARG00000019660 464 0.967 - - - - - - - 0.967 - relaxin family peptide receptor 2b [Source:ZFIN;Acc:ZDB-GENE-110408-27]
67. CABZ01067945.1 CABZ01067945.1 469 0.966 - - - - - - - 0.966 -
68. aldoaa ENSDARG00000011665 56184 0.966 - - - - 0.966 - - - - aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
69. wdr76 ENSDARG00000053554, ENSDARG00000115151 813 0.965 - - - - - - - 0.965 - WD repeat domain 76 [Source:ZFIN;Acc:ZDB-GENE-030131-4513]
70. CABZ01088365.1 CABZ01088365.1 66 0.965 - - - - - - - 0.965 -
71. zgc:153292 ENSDARG00000070458, ENSDARG00000112223 134 0.965 - - - - - - - 0.965 - zgc:153292 [Source:ZFIN;Acc:ZDB-GENE-060929-1098]
72. C22H19orf44 C22H19orf44 481 0.965 - - - - - - - 0.965 -
73. rad9a ENSDARG00000056984, ENSDARG00000115514 152 0.964 - - - - - - - 0.964 - RAD9 checkpoint clamp component A [Source:ZFIN;Acc:ZDB-GENE-040426-935]
74. mecr ENSDARG00000032326 314 0.963 - - - - - - - 0.963 - mitochondrial trans-2-enoyl-CoA reductase [Source:ZFIN;Acc:ZDB-GENE-050417-399]
75. si:ch211-193e13.5 ENSDARG00000052656 61 0.962 - - - - - - - 0.962 - si:ch211-193e13.5 [Source:ZFIN;Acc:ZDB-GENE-081104-158]
76. ZNF76 ENSDARG00000013279 260 0.962 - - - - - - - 0.962 - zinc finger protein 76 [Source:ZFIN;Acc:ZDB-GENE-061027-379]
77. pou2f2b pou2f2b 134 0.962 - - - - - - - 0.962 -
78. si:dkey-97a13.9 si:dkey-97a13.9 169 0.962 - - - - - - - 0.962 -
79. ADCYAP1R1 ADCYAP1R1 118 0.962 - - - - - - - 0.962 -
80. taf5l ENSDARG00000025808 556 0.962 - - - - - - - 0.962 - TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-5987]
81. nitr3a_1 ENSDARG00000110676 44 0.961 - - - - - - - 0.961 - novel immune-type receptor 3a [Source:NCBI gene;Acc:60649]
82. CABZ01041962.1 ENSDARG00000076082 690 0.961 - - - - - - - 0.961 - uncharacterized LOC798124 [Source:NCBI gene;Acc:798124]
83. si:dkey-11f4.20 ENSDARG00000100887 38 0.961 - - - - - - - 0.961 - si:dkey-11f4.20 [Source:ZFIN;Acc:ZDB-GENE-070912-359]
84. fancg ENSDARG00000024967, ENSDARG00000113462 82 0.961 - - - - - - - 0.961 - FA complementation group G [Source:ZFIN;Acc:ZDB-GENE-050417-103]
85. astn1 ENSDARG00000068323 348 0.961 - - - - - - - 0.961 - astrotactin 1 [Source:ZFIN;Acc:ZDB-GENE-050320-140]
86. MSH4 ENSDARG00000075826 37 0.961 - - - - - - - 0.961 - mutS homolog 4 [Source:ZFIN;Acc:ZDB-GENE-131121-643]
87. si:dkey-10c21.1 ENSDARG00000079133 32 0.961 - - - - - - - 0.961 - si:dkey-10c21.1 [Source:ZFIN;Acc:ZDB-GENE-081104-302]
88. GIPR ENSDARG00000025478 87 0.961 - - - - - - - 0.961 - gastric inhibitory polypeptide receptor [Source:ZFIN;Acc:ZDB-GENE-050516-4]
89. si:ch211-218m3.16 ENSDARG00000044336 33 0.961 - - - - - - - 0.961 - si:ch211-218m3.16 [Source:ZFIN;Acc:ZDB-GENE-091116-19]
90. si:ch211-233h19.2 ENSDARG00000042213 47 0.961 - - - - - - - 0.961 - si:ch211-233h19.2 [Source:ZFIN;Acc:ZDB-GENE-061009-14]
91. CR848025.1 ENSDARG00000100501 35 0.961 - - - - - - - 0.961 - si:dkey-202l22.4 [Source:NCBI gene;Acc:101882714]
92. si:ch73-61d6.3 ENSDARG00000057826 274 0.961 - - - - - - - 0.961 - si:ch73-61d6.3 [Source:ZFIN;Acc:ZDB-GENE-091204-109]
93. si:dkey-242e21.3 ENSDARG00000075723 77 0.961 - - - - - - - 0.961 - si:dkey-242e21.3 [Source:ZFIN;Acc:ZDB-GENE-100922-110]
94. si:ch211-173p18.3_1 ENSDARG00000035821 36 0.961 - - - - - - - 0.961 - si:ch211-173p18.3 [Source:ZFIN;Acc:ZDB-GENE-060503-672]
95. dnase1 ENSDARG00000012539 65 0.961 - - - - - - - 0.961 - deoxyribonuclease I [Source:ZFIN;Acc:ZDB-GENE-040718-423]
96. CR388228.1 ENSDARG00000117809 31 0.961 - - - - - - - 0.961 - uncharacterized LOC110437756 [Source:NCBI gene;Acc:110437756]
97. si:dkey-9i5.1 si:dkey-9i5.1 36 0.961 - - - - - - - 0.961 -
98. si:dkeyp-87d1.1 ENSDARG00000104681 35 0.961 - - - - - - - 0.961 - si:dkeyp-87d1.1 [Source:ZFIN;Acc:ZDB-GENE-041014-75]
99. meiob 75 0.961 - - - - - - - 0.961 - meiosis specific with OB domains
100. kcnk9 ENSDARG00000104563 92 0.961 - - - - - - - 0.961 - potassium channel, subfamily K, member 9 [Source:ZFIN;Acc:ZDB-GENE-070705-260]

There are 1269 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA