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Results for RFC3

Gene Name Gene ID Reads Annotation
RFC3 ENSGALG00000017064 7011 replication factor C subunit 3 [Source:NCBI gene;Acc:418907]











Genes with expression patterns similar to RFC3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RFC3 ENSGALG00000017064 7011 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 replication factor C subunit 3 [Source:NCBI gene;Acc:418907]
2. TRIP12 ENSGALG00000002929 11713 2.235 - - 0.738 - - - 0.779 0.718 - - thyroid hormone receptor interactor 12 [Source:HGNC Symbol;Acc:HGNC:12306]
3. CETN1 ENSGALG00000026741 7243 1.798 - - - - - - 0.823 0.975 - - centrin 1 [Source:NCBI gene;Acc:422668]
4. MRPL54 ENSGALG00000027611 39450 1.751 - - - - - - 0.800 0.951 - - mitochondrial ribosomal protein L54 [Source:HGNC Symbol;Acc:HGNC:16685]
5. EXO1 ENSGALG00000010748 7572 1.729 - - - - - - 0.762 0.967 - - exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3511]
6. FBF1 ENSGALG00000002179 1738 1.726 - - 0.755 - - - - 0.971 - - Fas binding factor 1 [Source:NCBI gene;Acc:770159]
7. TMEM126A ENSGALG00000014066 6149 1.68 - - - - - - 0.707 0.973 - - transmembrane protein 126A [Source:HGNC Symbol;Acc:HGNC:25382]
8. PDHB ENSGALG00000029576 12254 1.676 - - - - - - 0.705 0.971 - - pyruvate dehydrogenase (lipoamide) beta [Source:NCBI gene;Acc:416066]
9. SBNO1 ENSGALG00000003392 6731 1.671 - - - - - - 0.733 0.938 - - strawberry notch homolog 1 [Source:NCBI gene;Acc:427694]
10. KIAA0196 KIAA0196 4011 1.662 - - 0.719 - - - - 0.943 - -
11. TNFAIP8L1 ENSGALG00000004266 12611 1.579 - - - - - - 0.704 0.875 - - TNF alpha induced protein 8 like 1 [Source:NCBI gene;Acc:420162]
12. WDR61 ENSGALG00000003221 11352 1.535 - - 0.730 - - - 0.805 - - - WD repeat domain 61 [Source:NCBI gene;Acc:415359]
13. ABHD17A ENSGALG00000041163 5578 1.514 - - - - - - 0.736 0.778 - - abhydrolase domain containing 17A [Source:HGNC Symbol;Acc:HGNC:28756]
14. PSMC5 ENSGALG00000000349 21346 1.496 - - 0.702 - - - 0.794 - - - proteasome 26S subunit, ATPase 5 [Source:NCBI gene;Acc:428274]
15. MRPL53 ENSGALG00000037867 6100 1.437 - - 0.715 - - - 0.722 - - - mitochondrial ribosomal protein L53 [Source:NCBI gene;Acc:420196]
16. RIT1 ENSGALG00000014647 7174 1.436 - - 0.722 - - - 0.714 - - - Ras like without CAAX 1 [Source:NCBI gene;Acc:425068]
17. GBAS 18453 1.427 - - 0.720 - - - 0.707 - - - glioblastoma amplified sequence
18. GARS ENSGALG00000005694 18264 0.99 - - - - - - - 0.990 - - glycyl-tRNA synthetase [Source:NCBI gene;Acc:428403]
19. CENPL ENSGALG00000038411 4867 0.975 - - - - - - - 0.975 - - centromere protein L [Source:NCBI gene;Acc:426563]
20. SFT2D1 ENSGALG00000020005 10855 0.974 - - - - - - - 0.974 - - SFT2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21102]
21. C6ORF192 C6ORF192 4224 0.974 - - - - - - - 0.974 - -
22. RNFT1 ENSGALG00000005205 2888 0.973 - - - - - - - 0.973 - - ring finger protein, transmembrane 1 [Source:HGNC Symbol;Acc:HGNC:30206]
23. SLC35D1 ENSGALG00000011121 4456 0.973 - - - - - - - 0.973 - - solute carrier family 35 member D1 [Source:HGNC Symbol;Acc:HGNC:20800]
24. FUNDC2 ENSGALG00000029585 9334 0.973 - - - - - - - 0.973 - - FUN14 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24925]
25. CRELD2 ENSGALG00000008551 2084 0.973 - - - - - - - 0.973 - - cysteine rich with EGF like domains 2 [Source:NCBI gene;Acc:417735]
26. RCOR3 ENSGALG00000009871 7022 0.973 - - - - - - - 0.973 - - REST corepressor 3 [Source:NCBI gene;Acc:421380]
27. CDCA7 ENSGALG00000040833 7484 0.973 - - - - - - - 0.973 - - cell division cycle associated 7 [Source:HGNC Symbol;Acc:HGNC:14628]
28. SNIP1 ENSGALG00000002010 1429 0.972 - - - - - - - 0.972 - - Smad nuclear interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:30587]
29. NVL ENSGALG00000009322 5286 0.972 - - - - - - - 0.972 - - nuclear VCP-like [Source:NCBI gene;Acc:421326]
30. TMEM192 ENSGALG00000009528 2428 0.972 - - - - - - - 0.972 - - transmembrane protein 192 [Source:HGNC Symbol;Acc:HGNC:26775]
31. ATE1 ENSGALG00000009502 3751 0.972 - - - - - - - 0.972 - - arginyltransferase 1 [Source:NCBI gene;Acc:423936]
32. RFT1 ENSGALG00000001945 2446 0.972 - - - - - - - 0.972 - - RFT1 homolog [Source:NCBI gene;Acc:770487]
33. ZNF319 ENSGALG00000000999 1272 0.972 - - - - - - - 0.972 - - zinc finger protein 319 [Source:HGNC Symbol;Acc:HGNC:13644]
34. RAI2 ENSGALG00000016538 1074 0.971 - - - - - - - 0.971 - - retinoic acid induced 2 [Source:HGNC Symbol;Acc:HGNC:9835]
35. ELAVL4 ENSGALG00000010533 4978 0.971 - - - - - - - 0.971 - - ELAV like RNA binding protein 4 [Source:NCBI gene;Acc:395634]
36. MAP2K2 ENSGALG00000001267 3857 0.971 - - - - - - - 0.971 - - mitogen-activated protein kinase kinase 2 [Source:NCBI gene;Acc:396349]
37. PDCD6IP ENSGALG00000033500 580 0.971 - - - - - - - 0.971 - - programmed cell death 6 interacting protein [Source:NCBI gene;Acc:420725]
38. ENSGALG00000012250 ENSGALG00000012250 581 0.971 - - - - - - - 0.971 - -
39. PIGL ENSGALG00000004492 669 0.971 - - - - - - - 0.971 - - phosphatidylinositol glycan anchor biosynthesis class L, transcript variant X4
40. RNF168 ENSGALG00000006392 507 0.971 - - - - - - - 0.971 - - ring finger protein 168 [Source:HGNC Symbol;Acc:HGNC:26661]
41. PPM1D ENSGALG00000035610 6530 0.971 - - - - - - - 0.971 - - protein phosphatase, Mg2+/Mn2+ dependent 1D [Source:HGNC Symbol;Acc:HGNC:9277]
42. RBM7 ENSGALG00000007017 8779 0.971 - - - - - - - 0.971 - - RNA binding motif protein 7 [Source:NCBI gene;Acc:419760]
43. ATP2B4 ENSGALG00000003601 3746 0.971 - - - - - - - 0.971 - - ATPase plasma membrane Ca2+ transporting 4 [Source:HGNC Symbol;Acc:HGNC:817]
44. SPDYA ENSGALG00000017392 503 0.971 - - - - - - - 0.971 - - speedy/RINGO cell cycle regulator family member A [Source:HGNC Symbol;Acc:HGNC:30613]
45. ALS2 ENSGALG00000008415 2576 0.97 - - - - - - - 0.970 - - ALS2, alsin Rho guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:443]
46. CRNKL1 ENSGALG00000008429 7280 0.97 - - - - - - - 0.970 - - crooked neck pre-mRNA splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:15762]
47. PMP22 ENSGALG00000031425 5358 0.97 - - - - - - - 0.970 - - peripheral myelin protein 22 [Source:NCBI gene;Acc:417327]
48. NBL1 ENSGALG00000040297 8165 0.97 - - - - - - - 0.970 - - neuroblastoma 1, DAN family BMP antagonist [Source:NCBI gene;Acc:373952]
49. DLC1 ENSGALG00000013715 5297 0.969 - - - - - - - 0.969 - - DLC1 Rho GTPase activating protein [Source:HGNC Symbol;Acc:HGNC:2897]
50. PPP3R1 ENSGALG00000023648 3417 0.967 - - - - - - - 0.967 - - protein phosphatase 3 regulatory subunit B, alpha [Source:NCBI gene;Acc:378804]
51. gga-mir-6587 ENSGALG00000026386 9441 0.967 - - - - - - - 0.967 - - gga-mir-6587 [Source:miRBase;Acc:MI0022407]
52. TTL ENSGALG00000008614 3991 0.966 - - - - - - - 0.966 - - tubulin tyrosine ligase [Source:NCBI gene;Acc:416711]
53. YAF2 ENSGALG00000009540 8452 0.965 - - - - - - - 0.965 - - YY1 associated factor 2 [Source:NCBI gene;Acc:417790]
54. G3BP2 ENSGALG00000010882 21129 0.965 - - - - - - - 0.965 - - G3BP stress granule assembly factor 2 [Source:HGNC Symbol;Acc:HGNC:30291]
55. IFNAR2 ENSGALG00000041867 1596 0.963 - - - - - - - 0.963 - - interferon alpha and beta receptor subunit 2 [Source:NCBI gene;Acc:395664]
56. JSC JSC 7982 0.961 - - - - - - - 0.961 - -
57. SLC25A39 ENSGALG00000042894 10654 0.96 - - - - - - - 0.960 - - solute carrier family 25 member 39 [Source:HGNC Symbol;Acc:HGNC:24279]
58. COX7A2L ENSGALG00000037996 13646 0.956 - - - - - - - 0.956 - - cytochrome c oxidase subunit 7A2 like [Source:NCBI gene;Acc:421392]
59. XPO5 ENSGALG00000010341 24765 0.945 - - - - - - - 0.945 - - exportin 5 [Source:NCBI gene;Acc:421450]
60. AP2B1 ENSGALG00000042125 13229 0.939 - - - - - - - 0.939 - - adaptor related protein complex 2 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:563]
61. TPD52 ENSGALG00000040167 9891 0.934 - - - - - - - 0.934 - - tumor protein D52 [Source:NCBI gene;Acc:770339]
62. NUP107 ENSGALG00000009934 2097 0.933 - - - - - - - 0.933 - - nucleoporin 107 [Source:NCBI gene;Acc:101751988]
63. INPP5A ENSGALG00000010493 6769 0.932 - - - - - - - 0.932 - - inositol polyphosphate-5-phosphatase A [Source:HGNC Symbol;Acc:HGNC:6076]
64. CHD4 ENSGALG00000013565 25695 0.931 - - - - - - - 0.931 - - chromodomain helicase DNA binding protein 4
65. ANKRD11 ENSGALG00000006222 12327 0.929 - - - - - - - 0.929 - - ankyrin repeat domain 11, transcript variant X2
66. PRTG ENSGALG00000037336 34665 0.924 - - - - - - - 0.924 - - protogenin [Source:NCBI gene;Acc:415407]
67. XRCC5 ENSGALG00000011492 6802 0.912 - - - - - - - 0.912 - - X-ray repair cross complementing 5 [Source:HGNC Symbol;Acc:HGNC:12833]
68. ZFR ENSGALG00000003235 8466 0.904 - - - - - - 0.904 - - - zinc finger RNA binding protein, transcript variant X3
69. PPA2 ENSGALG00000010582 22301 0.898 - - - - - - - 0.898 - - pyrophosphatase (inorganic) 2 [Source:HGNC Symbol;Acc:HGNC:28883]
70. ENSGALG00000017396 ENSGALG00000017396 9028 0.886 - - - - - - - 0.886 - -
71. Sep-02_1 Sep-02_1 19203 0.886 - - - - - - - 0.886 - -
72. SLMO2 SLMO2 9207 0.881 - - - - - - 0.881 - - -
73. FAM98A ENSGALG00000010428 9585 0.879 - - - - - - - 0.879 - - family with sequence similarity 98 member A [Source:NCBI gene;Acc:421458]
74. CDC42EP4 ENSGALG00000023364 9240 0.87 - - - - - - - 0.870 - - CDC42 effector protein 4 [Source:HGNC Symbol;Acc:HGNC:17147]
75. ZOV3 ZOV3 3267 0.869 - - - - - - - 0.869 - -
76. LRPPRC ENSGALG00000009967 17091 0.867 - - - - - - - 0.867 - - leucine rich pentatricopeptide repeat containing [Source:HGNC Symbol;Acc:HGNC:15714]
77. PHAX ENSGALG00000014691 8114 0.863 - - - - - - 0.863 - - - phosphorylated adaptor for RNA export [Source:NCBI gene;Acc:427124]
78. SSU72 ENSGALG00000001489 7589 0.861 - - - - - - 0.861 - - - SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:419410]
79. PDHA1 ENSGALG00000016430 7070 0.86 - - - - - - 0.860 - - - pyruvate dehydrogenase E1 alpha 1 subunit [Source:NCBI gene;Acc:418610]
80. SDF2L1 ENSGALG00000031982 6084 0.859 - - - - - - 0.859 - - - stromal cell derived factor 2 like 1 [Source:HGNC Symbol;Acc:HGNC:10676]
81. GTPBP4 ENSGALG00000006703 16183 0.852 - - - - - - 0.852 - - - GTP binding protein 4 [Source:NCBI gene;Acc:420458]
82. CDC20 ENSGALG00000009971 11197 0.852 - - - - - - 0.852 - - - cell division cycle 20 [Source:NCBI gene;Acc:424563]
83. ATP6V1G1 ENSGALG00000007190 82534 0.845 - - - - - - - 0.845 - - ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
84. TMPO ENSGALG00000011504 14454 0.845 - - - - - - 0.845 - - - thymopoietin [Source:NCBI gene;Acc:417923]
85. LEPROT ENSGALG00000011047 7132 0.844 - - - - - - 0.844 - - - leptin receptor overlapping transcript [Source:NCBI gene;Acc:424699]
86. ENSGALG00000023609 ENSGALG00000023609 6933 0.842 - - - - - - - 0.842 - -
87. SCP2 ENSGALG00000010652 19563 0.842 - - - - - - 0.842 - - - sterol carrier protein 2 [Source:NCBI gene;Acc:396550]
88. HNRNPLL ENSGALG00000008504 14719 0.84 - - - - - - 0.840 - - - heterogeneous nuclear ribonucleoprotein L like [Source:NCBI gene;Acc:416702]
89. ARPC1A ENSGALG00000004693 11583 0.838 - - - - - - 0.838 - - - actin related protein 2/3 complex subunit 1A [Source:NCBI gene;Acc:770269]
90. NDUFAF1 ENSGALG00000008587 14779 0.837 - - - - - - 0.837 - - - NADH:ubiquinone oxidoreductase complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18828]
91. PTP4A2 ENSGALG00000003265 24826 0.836 - - - - - - 0.836 - - - protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:HGNC:9635]
92. GDI2 ENSGALG00000008169 67151 0.835 - - - - - - - 0.835 - - GDP dissociation inhibitor 2 [Source:NCBI gene;Acc:395854]
93. FAM207A ENSGALG00000007513 8748 0.835 - - - - - - 0.835 - - - family with sequence similarity 207 member A [Source:HGNC Symbol;Acc:HGNC:15811]
94. PSMD12 ENSGALG00000026225 17473 0.834 - - - - - - 0.834 - - - proteasome 26S subunit, non-ATPase 12 [Source:NCBI gene;Acc:417425]
95. KDM5B ENSGALG00000038948 50645 0.833 - - - - - - 0.833 - - - lysine demethylase 5B [Source:NCBI gene;Acc:421168]
96. SMU1 ENSGALG00000002014 8136 0.833 - - - - - - 0.833 - - - SMU1, DNA replication regulator and spliceosomal factor [Source:NCBI gene;Acc:427377]
97. KRIT1 ENSGALG00000042651 4486 0.833 - - - - - - 0.833 - - - KRIT1, ankyrin repeat containing [Source:NCBI gene;Acc:420549]
98. EMC7 ENSGALG00000009637 4969 0.833 - - - - - - 0.833 - - - ER membrane protein complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:24301]
99. DYNC1H1 ENSGALG00000011330 16400 0.831 - - - - - - 0.831 - - - dynein cytoplasmic 1 heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2961]
100. CPSF2 ENSGALG00000010783 5236 0.83 - - - - - - 0.830 - - - cleavage and polyadenylation specific factor 2 [Source:NCBI gene;Acc:423416]

There are 395 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA