Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RFC1

Gene Name Gene ID Reads Annotation
RFC1 ENSGALG00000014298 6516 replication factor C subunit 1 [Source:NCBI gene;Acc:422788]











Genes with expression patterns similar to RFC1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RFC1 ENSGALG00000014298 6516 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 replication factor C subunit 1 [Source:NCBI gene;Acc:422788]
2. COBRA1 COBRA1 4600 1.686 - - - - - - 0.806 0.880 - -
3. SEC22A ENSGALG00000011697 7981 1.641 - - - - - - 0.774 0.867 - - SEC22 homolog A, vesicle trafficking protein [Source:NCBI gene;Acc:424250]
4. NAA20 ENSGALG00000012587 11349 1.635 - - - - - - 0.830 0.805 - - N(alpha)-acetyltransferase 20, NatB catalytic subunit [Source:HGNC Symbol;Acc:HGNC:15908]
5. BPNT1 ENSGALG00000009576 7445 1.624 - - - - - - 0.762 0.862 - - 3'(2'), 5'-bisphosphate nucleotidase 1 [Source:NCBI gene;Acc:421347]
6. RRP1B ENSGALG00000035696 12309 1.616 - - - - - - 0.803 0.813 - - ribosomal RNA processing 1B [Source:NCBI gene;Acc:425237]
7. PCTP ENSGALG00000003099 5851 1.604 - - - - - - 0.822 0.782 - - phosphatidylcholine transfer protein [Source:HGNC Symbol;Acc:HGNC:8752]
8. NDUFA12 ENSGALG00000011325 19807 1.598 - - - - - - 0.780 0.818 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:NCBI gene;Acc:417907]
9. MRPL47 ENSGALG00000013759 9044 1.59 - - - - - - 0.787 0.803 - - mitochondrial ribosomal protein L47 [Source:HGNC Symbol;Acc:HGNC:16652]
10. DAD1 ENSGALG00000035626 32604 1.589 - - - - - - 0.708 0.881 - - defender against cell death 1 [Source:NCBI gene;Acc:395343]
11. HOXA5 ENSGALG00000025929 6231 1.586 - - - - - - 0.717 0.869 - - homeobox A5 [Source:NCBI gene;Acc:100858404]
12. RIOK2 ENSGALG00000015288 6280 1.584 - - - - - - 0.830 0.754 - - RIO kinase 2 [Source:NCBI gene;Acc:427278]
13. HMGB3 ENSGALG00000009071 12011 1.571 - - - - - - 0.809 0.762 - - high mobility group box 3 [Source:NCBI gene;Acc:396232]
14. GPR161 ENSGALG00000015247 3473 1.561 - - - - - - 0.755 0.806 - - G protein-coupled receptor 161 [Source:HGNC Symbol;Acc:HGNC:23694]
15. CCNC ENSGALG00000015471 6497 1.56 - - - - - - 0.792 0.768 - - cyclin C [Source:NCBI gene;Acc:421791]
16. PCNT ENSGALG00000007021 6428 1.558 - - - - - - 0.806 0.752 - - pericentrin [Source:HGNC Symbol;Acc:HGNC:16068]
17. TAF2 ENSGALG00000043193 6311 1.555 - - - - - - 0.766 0.789 - - TATA-box binding protein associated factor 2 [Source:NCBI gene;Acc:428389]
18. DCPS ENSGALG00000031143 10191 1.55 - - - - - - 0.792 0.758 - - decapping enzyme, scavenger [Source:HGNC Symbol;Acc:HGNC:29812]
19. C4orf27 C4orf27 16724 1.55 - - - - - - 0.827 0.723 - -
20. POLR2B ENSGALG00000011387 4864 1.549 - - - - - - 0.809 0.740 - - RNA polymerase II subunit B [Source:NCBI gene;Acc:422621]
21. CCNH ENSGALG00000015641 8051 1.546 - - - - - - 0.794 0.752 - - cyclin H [Source:HGNC Symbol;Acc:HGNC:1594]
22. MRPL2 ENSGALG00000008597 16500 1.545 - - - - - - 0.780 0.765 - - mitochondrial ribosomal protein L2 [Source:HGNC Symbol;Acc:HGNC:14056]
23. CTSL2 CTSL2 7966 1.533 - - - - - - 0.748 0.785 - -
24. IREB2 ENSGALG00000035462 10659 1.533 - - - - - - 0.764 0.769 - - iron responsive element binding protein 2 [Source:NCBI gene;Acc:427490]
25. HCCS ENSGALG00000005571 4939 1.529 - - - - - - 0.796 0.733 - - holocytochrome c synthase [Source:NCBI gene;Acc:424482]
26. EXOC2 ENSGALG00000012837 4914 1.529 - - - - - - 0.740 0.789 - - exocyst complex component 2 [Source:NCBI gene;Acc:420889]
27. C11H16ORF80 C11H16ORF80 18673 1.52 - - - - - - 0.749 0.771 - -
28. PRPF3 ENSGALG00000028205 3791 1.518 - - - - - - 0.742 0.776 - - pre-mRNA processing factor 3 [Source:NCBI gene;Acc:426667]
29. FANCL ENSGALG00000030022 7423 1.516 - - - - - - 0.724 0.792 - - FA complementation group L [Source:NCBI gene;Acc:421202]
30. EXOSC9 ENSGALG00000011884 3403 1.514 - - - - - - 0.743 0.771 - - exosome component 9 [Source:NCBI gene;Acc:619530]
31. KDM3B ENSGALG00000007663 7189 1.511 - - - - - - 0.748 0.763 - - lysine demethylase 3B [Source:HGNC Symbol;Acc:HGNC:1337]
32. CENPK ENSGALG00000014753 12414 1.51 - - - - - - 0.723 0.787 - - centromere protein K [Source:NCBI gene;Acc:427162]
33. CDC42BPB ENSGALG00000011432 8220 1.509 - - - - - - 0.778 0.731 - - CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
34. CCNDBP1 ENSGALG00000004837 11520 1.506 - - - - - - 0.763 0.743 - - cyclin D1 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:1587]
35. PCM1 ENSGALG00000013602 6347 1.49 - - - - - - 0.713 0.777 - - pericentriolar material 1 [Source:NCBI gene;Acc:395204]
36. ZNF277 ENSGALG00000009454 7407 1.488 - - - - - - 0.707 0.781 - - zinc finger protein 277 [Source:NCBI gene;Acc:427859]
37. QTRTD1 QTRTD1 10765 1.487 - - - - - - 0.703 0.784 - -
38. XBP1 ENSGALG00000005796 14007 1.486 - - - - - - 0.718 0.768 - - X-box binding protein 1 [Source:NCBI gene;Acc:416918]
39. SOX11 ENSGALG00000016397 12144 1.48 - - - - - - 0.747 0.733 - - SRY-box 11 [Source:NCBI gene;Acc:396104]
40. KLHL21 ENSGALG00000035211 6145 1.475 - - - - - - 0.730 0.745 - - kelch like family member 21 [Source:HGNC Symbol;Acc:HGNC:29041]
41. FAM133B 9239 1.474 - - - - - - 0.763 0.711 - - family with sequence similarity 133 member B
42. SF3B3 ENSGALG00000002531 19397 1.472 - - - - - - 0.706 0.766 - - splicing factor 3b subunit 3, transcript variant X2
43. SPCS1 ENSGALG00000001655 7718 1.472 - - - - - - 0.711 0.761 - - signal peptidase complex subunit 1 [Source:NCBI gene;Acc:415899]
44. MSMO1 ENSGALG00000009560 6928 1.467 - - - - - - 0.712 0.755 - - methylsterol monooxygenase 1 [Source:NCBI gene;Acc:422423]
45. YIPF5 ENSGALG00000007404 5598 1.465 - - - - - - 0.714 0.751 - - Yip1 domain family member 5 [Source:NCBI gene;Acc:416344]
46. LSG1 ENSGALG00000007058 4591 1.465 - - - - - - 0.721 0.744 - - large 60S subunit nuclear export GTPase 1 [Source:NCBI gene;Acc:424897]
47. MED21 ENSGALG00000027435 5766 1.465 - - - - - - 0.714 0.751 - - mediator complex subunit 21 [Source:HGNC Symbol;Acc:HGNC:11473]
48. CWC27 ENSGALG00000014747 8389 1.465 - - - - - - 0.706 0.759 - - CWC27 spliceosome associated protein homolog [Source:HGNC Symbol;Acc:HGNC:10664]
49. DYNC1I2 ENSGALG00000009551 5420 1.463 - - - - - - 0.751 0.712 - - dynein cytoplasmic 1 intermediate chain 2 [Source:NCBI gene;Acc:424151]
50. YRDC ENSGALG00000029001 6529 1.461 - - - - - - 0.710 0.751 - - yrdC N6-threonylcarbamoyltransferase domain containing [Source:HGNC Symbol;Acc:HGNC:28905]
51. BAG5 ENSGALG00000031062 4498 1.46 - - - - - - 0.742 0.718 - - BCL2 associated athanogene 5 [Source:NCBI gene;Acc:423482]
52. CPSF3L CPSF3L 3584 1.459 - - - - - - 0.730 0.729 - -
53. NUP85 ENSGALG00000007974 21249 1.447 - - - - - - 0.729 0.718 - - nucleoporin 85 [Source:NCBI gene;Acc:422120]
54. TBL3 ENSGALG00000005558 8363 1.446 - - - - - - 0.734 0.712 - - transducin beta like 3 [Source:NCBI gene;Acc:416545]
55. SASS6 ENSGALG00000005302 4029 1.445 - - - - - - 0.706 0.739 - - SAS-6 centriolar assembly protein [Source:NCBI gene;Acc:424471]
56. PTGR1 ENSGALG00000015702 3667 1.444 - - - - - - 0.720 0.724 - - prostaglandin reductase 1 [Source:NCBI gene;Acc:427337]
57. PPAPDC1B PPAPDC1B 6698 1.441 - - - - - - 0.725 0.716 - -
58. KTN1 ENSGALG00000012137 4058 1.44 - - - - - - 0.711 0.729 - - kinectin 1 [Source:NCBI gene;Acc:396335]
59. NMT1 ENSGALG00000000857 5770 1.44 - - - - - - 0.736 0.704 - - N-myristoyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:7857]
60. MRPL46 ENSGALG00000006782 5033 1.439 - - - - - - 0.736 0.703 - - mitochondrial ribosomal protein L46 [Source:NCBI gene;Acc:415499]
61. FAM177A1 ENSGALG00000010046 4318 1.437 - - - - - - 0.731 0.706 - - family with sequence similarity 177 member A1 [Source:NCBI gene;Acc:423323]
62. HMGXB4 ENSGALG00000044768 6005 1.436 - - 0.714 - - - - 0.722 - - HMG-box containing 4 [Source:HGNC Symbol;Acc:HGNC:5003]
63. IARS ENSGALG00000004813 12936 1.425 - - - - - - 0.707 0.718 - - isoleucyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:5330]
64. NUDT7 ENSGALG00000034395 7396 0.902 - - - - - - - 0.902 - - nudix hydrolase 7 [Source:NCBI gene;Acc:415800]
65. C1H12ORF23 C1H12ORF23 13234 0.9 - - - - - - 0.900 - - -
66. ERLIN2 ENSGALG00000003092 18251 0.896 - - - - - - - 0.896 - - ER lipid raft associated 2 [Source:HGNC Symbol;Acc:HGNC:1356]
67. TDP2 ENSGALG00000013637 6595 0.874 - - - - - - - 0.874 - - tyrosyl-DNA phosphodiesterase 2 [Source:NCBI gene;Acc:421007]
68. DGCR2 ENSGALG00000005891 8405 0.874 - - - - - - 0.874 - - - DiGeorge syndrome critical region gene 2 [Source:HGNC Symbol;Acc:HGNC:2845]
69. EBNA1BP2 ENSGALG00000009045 17453 0.872 - - - - - - 0.872 - - - EBNA1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:15531]
70. FAM18B1 ENSGALG00000001335 5177 0.869 - - - - - - - 0.869 - - family with sequence similarity 18, member B1 [Source:NCBI gene;Acc:417324]
71. PARP1 ENSGALG00000009228 39433 0.869 - - - - - - 0.869 - - - poly (ADP-ribose) polymerase 1 [Source:NCBI gene;Acc:396199]
72. PTPMT1 ENSGALG00000008091 6160 0.868 - - - - - - - 0.868 - - protein tyrosine phosphatase, mitochondrial 1 [Source:NCBI gene;Acc:423181]
73. PREP ENSGALG00000015405 17050 0.867 - - - - - - 0.867 - - - prolyl endopeptidase [Source:NCBI gene;Acc:421785]
74. RABGGTB ENSGALG00000011388 11654 0.865 - - - - - - 0.865 - - - Rab geranylgeranyltransferase subunit beta [Source:HGNC Symbol;Acc:HGNC:9796]
75. MSH6 ENSGALG00000008957 6396 0.862 - - - - - - - 0.862 - - mutS homolog 6 [Source:HGNC Symbol;Acc:HGNC:7329]
76. KIF2C ENSGALG00000010120 8999 0.861 - - - - - - 0.861 - - - kinesin family member 2C, transcript variant X1
77. GCSH ENSGALG00000032679 29231 0.86 - - - - - - - 0.860 - - glycine cleavage system protein H [Source:NCBI gene;Acc:415803]
78. LSM5 ENSGALG00000041625 22307 0.858 - - - - - - 0.858 - - - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420751]
79. HSCB ENSGALG00000005706 12953 0.858 - - - - - - - 0.858 - - HscB mitochondrial iron-sulfur cluster cochaperone [Source:HGNC Symbol;Acc:HGNC:28913]
80. WDR53 ENSGALG00000006395 4938 0.855 - - - - - - 0.855 - - - WD repeat domain 53 [Source:HGNC Symbol;Acc:HGNC:28786]
81. DCTD ENSGALG00000010674 8396 0.854 - - - - - - - 0.854 - - dCMP deaminase [Source:NCBI gene;Acc:422556]
82. TPRKB ENSGALG00000013018 8687 0.853 - - - - - - 0.853 - - - TP53RK binding protein [Source:HGNC Symbol;Acc:HGNC:24259]
83. STRN3 ENSGALG00000040464 9045 0.851 - - - - - - - 0.851 - - striatin 3 [Source:HGNC Symbol;Acc:HGNC:15720]
84. DERL1 ENSGALG00000033950 15074 0.85 - - - - - - 0.850 - - - derlin 1 [Source:NCBI gene;Acc:420350]
85. CDC40 ENSGALG00000015061 6118 0.848 - - - - - - 0.848 - - - cell division cycle 40 [Source:NCBI gene;Acc:421760]
86. DJ-1 DJ-1 13462 0.848 - - - - - - - 0.848 - -
87. CTNNBL1 ENSGALG00000006817 6765 0.847 - - - - - - - 0.847 - - catenin beta like 1 [Source:HGNC Symbol;Acc:HGNC:15879]
88. gga-mir-6596 ENSGALG00000026117 2893 0.847 - - - - - - 0.847 - - - gga-mir-6596 [Source:miRBase;Acc:MI0022416]
89. ADD1 ENSGALG00000015664 6828 0.847 - - - - - - 0.847 - - - adducin 1 [Source:NCBI gene;Acc:422882]
90. MTMR8 ENSGALG00000007590 6022 0.845 - - - - - - 0.845 - - - myotubularin related protein 8 [Source:NCBI gene;Acc:422312]
91. MRPS22 ENSGALG00000005367 8307 0.844 - - - - - - - 0.844 - - mitochondrial ribosomal protein S22 [Source:HGNC Symbol;Acc:HGNC:14508]
92. C17H9ORF16 C17H9ORF16 7908 0.842 - - - - - - 0.842 - - -
93. RCN2 ENSGALG00000039284 17848 0.841 - - - - - - - 0.841 - - reticulocalbin 2 [Source:NCBI gene;Acc:415350]
94. FNBP1L ENSGALG00000005850 9219 0.841 - - - - - - 0.841 - - - formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
95. MOCS2 ENSGALG00000014906 4974 0.841 - - - - - - 0.841 - - - molybdenum cofactor synthesis 2 [Source:HGNC Symbol;Acc:HGNC:7193]
96. ASUN ASUN 17129 0.84 - - - - - - 0.840 - - -
97. SRBD1 ENSGALG00000009990 4568 0.837 - - - - - - - 0.837 - - S1 RNA binding domain 1 [Source:HGNC Symbol;Acc:HGNC:25521]
98. EMC3 ENSGALG00000003738 10363 0.837 - - - - - - - 0.837 - - ER membrane protein complex subunit 3 [Source:NCBI gene;Acc:415936]
99. C10orf88 ENSGALG00000000011 6026 0.836 - - - - - - - 0.836 - - chromosome 10 open reading frame 88 [Source:HGNC Symbol;Acc:HGNC:25822]
100. UBE2J2 ENSGALG00000001848 6527 0.836 - - - - - - 0.836 - - - ubiquitin conjugating enzyme E2 J2 [Source:HGNC Symbol;Acc:HGNC:19268]

There are 760 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA