Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RB1

Gene Name Gene ID Reads Annotation
RB1 ENSGALG00000016997 3712 retinoblastoma 1 [Source:NCBI gene;Acc:386582]











Genes with expression patterns similar to RB1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RB1 ENSGALG00000016997 3712 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 retinoblastoma 1 [Source:NCBI gene;Acc:386582]
2. B4GAL-T7 B4GAL-T7 12356 1.651 - - - - - - 0.926 0.725 - -
3. ATP5J 14451 1.629 - - - - - - 0.906 0.723 - - ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6, transcript variant X2
4. PUSL1_1 ENSGALG00000001701, ENSGALG00000001714 341 1.478 - - 0.739 - - - 0.739 - - - pseudouridylate synthase-like 1, transcript variant X8
5. CALSYNTENIN-1 CALSYNTENIN-1 11195 1.425 - - - - - - 0.720 - 0.705 -
6. GBA2 ENSGALG00000002412 2913 0.961 - - - - - - 0.961 - - - glucosylceramidase beta 2 [Source:HGNC Symbol;Acc:HGNC:18986]
7. CPQ ENSGALG00000030866 3962 0.951 - - - - - - 0.951 - - - carboxypeptidase Q [Source:NCBI gene;Acc:420238]
8. BCL9 ENSGALG00000037655 4620 0.946 - - - - - - 0.946 - - - B cell CLL/lymphoma 9 [Source:HGNC Symbol;Acc:HGNC:1008]
9. PIGX ENSGALG00000006408 5783 0.935 - - - - - - 0.935 - - - phosphatidylinositol glycan anchor biosynthesis class X [Source:HGNC Symbol;Acc:HGNC:26046]
10. PSMD6 ENSGALG00000007315 3906 0.933 - - - - - - 0.933 - - - proteasome 26S subunit, non-ATPase 6 [Source:HGNC Symbol;Acc:HGNC:9564]
11. MPP1 ENSGALG00000005071 3865 0.932 - - - - - - 0.932 - - - membrane palmitoylated protein 1 [Source:NCBI gene;Acc:422197]
12. TLE3 ENSGALG00000008120 2655 0.924 - - - - - - 0.924 - - - transducin like enhancer of split 3, transcript variant X10
13. TUBD1 ENSGALG00000005173 1364 0.916 - - - - - - 0.916 - - - tubulin delta 1 [Source:HGNC Symbol;Acc:HGNC:16811]
14. ATL1 ENSGALG00000012339 3789 0.912 - - - - - - 0.912 - - - atlastin GTPase 1 [Source:HGNC Symbol;Acc:HGNC:11231]
15. KDM4A ENSGALG00000010074 7219 0.911 - - - - - - 0.911 - - - lysine demethylase 4A
16. TIPIN ENSGALG00000007649 3565 0.911 - - - - - - 0.911 - - - TIMELESS interacting protein [Source:NCBI gene;Acc:415548]
17. LONP2 ENSGALG00000003942 3380 0.901 - - - - - - 0.901 - - - lon peptidase 2, peroxisomal [Source:NCBI gene;Acc:415740]
18. PDCL3 ENSGALG00000016772 14897 0.897 - - - - - - 0.897 - - - phosducin like 3 [Source:NCBI gene;Acc:418709]
19. DCUN1D2 ENSGALG00000029145 2414 0.897 - - - - - - 0.897 - - - defective in cullin neddylation 1 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:20328]
20. RALGAPB ENSGALG00000001420 5112 0.89 - - - - - - 0.890 - - - Ral GTPase activating protein non-catalytic beta subunit [Source:NCBI gene;Acc:419128]
21. EXOSC8 ENSGALG00000017048 2939 0.889 - - - - - - 0.889 - - - exosome component 8 [Source:HGNC Symbol;Acc:HGNC:17035]
22. GGA3 ENSGALG00000007992 3566 0.886 - - - - - - 0.886 - - - golgi associated, gamma adaptin ear containing, ARF binding protein 3 [Source:NCBI gene;Acc:422121]
23. DUSP14 ENSGALG00000027641 3662 0.883 - - - - - - 0.883 - - - dual specificity phosphatase 14 [Source:HGNC Symbol;Acc:HGNC:17007]
24. EDF1 ENSGALG00000038003 6757 0.882 - - - - - - 0.882 - - - endothelial differentiation related factor 1 [Source:NCBI gene;Acc:417286]
25. DPCD ENSGALG00000007731 7225 0.869 - - - - - - 0.869 - - - deleted in primary ciliary dyskinesia homolog (mouse) [Source:NCBI gene;Acc:423852]
26. OPTC ENSGALG00000003554 3698 0.862 - - - - - - 0.862 - - - opticin [Source:NCBI gene;Acc:395130]
27. WNT4 ENSGALG00000041708 1277 0.851 - - - - - - 0.851 - - - Wnt family member 4 [Source:NCBI gene;Acc:395561]
28. MYEF2 ENSGALG00000032546 7436 0.847 - - - - - - 0.847 - - - myelin expression factor 2 [Source:NCBI gene;Acc:415432]
29. FAM49B ENSGALG00000036490 7984 0.835 - - - - - - 0.835 - - - family with sequence similarity 49 member B [Source:HGNC Symbol;Acc:HGNC:25216]
30. GYG1 ENSGALG00000035535 6311 0.832 - - - - - - 0.832 - - - glycogenin 1 [Source:NCBI gene;Acc:425050]
31. RNF8 ENSGALG00000023256 5495 0.827 - - - - - - 0.827 - - - ring finger protein 8 [Source:HGNC Symbol;Acc:HGNC:10071]
32. CAB39 ENSGALG00000027262 6779 0.824 - - - - - - 0.824 - - - calcium binding protein 39 [Source:HGNC Symbol;Acc:HGNC:20292]
33. TXLNA 6802 0.822 - - - - - - 0.822 - - - taxilin alpha, transcript variant X2
34. PHACTR4 ENSGALG00000042485 3523 0.817 - - - - - - 0.817 - - - phosphatase and actin regulator 4 [Source:HGNC Symbol;Acc:HGNC:25793]
35. UBR4 ENSGALG00000030563 5225 0.814 - - - - - - 0.814 - - - ubiquitin protein ligase E3 component n-recognin 4 [Source:HGNC Symbol;Acc:HGNC:30313]
36. NNT ENSGALG00000014869 8496 0.813 - - - - - - 0.813 - - - nicotinamide nucleotide transhydrogenase [Source:HGNC Symbol;Acc:HGNC:7863]
37. BMP7 ENSGALG00000007668 6645 0.81 - - 0.810 - - - - - - - bone morphogenetic protein 7 [Source:HGNC Symbol;Acc:HGNC:1074]
38. DNAJB11 ENSGALG00000006564 9353 0.809 - - - - - - 0.809 - - - DnaJ heat shock protein family (Hsp40) member B11
39. STX12 ENSGALG00000000723 9703 0.803 - - - - - - 0.803 - - - syntaxin 12 [Source:HGNC Symbol;Acc:HGNC:11430]
40. CLEC3B ENSGALG00000030969 363 0.803 - - 0.803 - - - - - - - C-type lectin domain family 3 member B [Source:NCBI gene;Acc:395386]
41. MPHOSPH8 ENSGALG00000017145 6280 0.802 - - - - - - 0.802 - - - M-phase phosphoprotein 8 [Source:NCBI gene;Acc:418957]
42. HPS3 ENSGALG00000040089 44 0.8 - - 0.800 - - - - - - - HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 [Source:HGNC Symbol;Acc:HGNC:15597]
43. GRAMD4 ENSGALG00000034274 3826 0.798 - - - - - - 0.798 - - - GRAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:29113]
44. DR1 ENSGALG00000005858 8016 0.79 - - - - - - 0.790 - - - down-regulator of transcription 1 [Source:NCBI gene;Acc:424496]
45. ENSGALG00000014375 ENSGALG00000014375 4741 0.789 - - - - - - 0.789 - - -
46. NUDT1 ENSGALG00000004245 9034 0.786 - - - - - - 0.786 - - - nudix hydrolase 1 [Source:NCBI gene;Acc:416467]
47. GFM1 ENSGALG00000009634 7213 0.783 - - - - - - - 0.783 - - G elongation factor mitochondrial 1 [Source:HGNC Symbol;Acc:HGNC:13780]
48. ENSGALG00000004283 ENSGALG00000004283 4771 0.783 - - - - - - 0.783 - - -
49. TRAPPC6B ENSGALG00000010157 7567 0.783 - - - - - - - 0.783 - - trafficking protein particle complex 6B [Source:NCBI gene;Acc:423337]
50. HSP70 HSP70 986 0.781 - - 0.781 - - - - - - -
51. TSPAN14 ENSGALG00000002414 69 0.776 - - 0.776 - - - - - - - tetraspanin 14 [Source:NCBI gene;Acc:423624]
52. IMPA1 ENSGALG00000034487 3691 0.775 - - 0.775 - - - - - - - inositol monophosphatase 1 [Source:HGNC Symbol;Acc:HGNC:6050]
53. MRPS22 ENSGALG00000005367 8307 0.775 - - - - - - 0.775 - - - mitochondrial ribosomal protein S22 [Source:HGNC Symbol;Acc:HGNC:14508]
54. BUD31 ENSGALG00000004705 19474 0.774 - - - - - - 0.774 - - - BUD31 homolog [Source:HGNC Symbol;Acc:HGNC:29629]
55. PRKCE ENSGALG00000010000 99 0.773 - - 0.773 - - - - - - - protein kinase C epsilon, transcript variant X1
56. CISD2 ENSGALG00000027860 12968 0.771 - - - - - - 0.771 - - - CDGSH iron sulfur domain 2 [Source:HGNC Symbol;Acc:HGNC:24212]
57. PAX-7 PAX-7 3856 0.77 - - - - - - 0.770 - - -
58. NMNAT1 ENSGALG00000043318 471 0.769 - - 0.769 - - - - - - - nicotinamide nucleotide adenylyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:17877]
59. SLU7 ENSGALG00000034414 5386 0.766 - - - - - - 0.766 - - - SLU7 homolog, splicing factor [Source:NCBI gene;Acc:416157]
60. GBAS 18453 0.764 - - - - - - 0.764 - - - glioblastoma amplified sequence
61. ZC3H6 ENSGALG00000008269 10353 0.763 - - - - - - 0.763 - - - zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:421230]
62. ATXN2 ENSGALG00000004625 6306 0.763 - - - - - - 0.763 - - - ataxin 2 [Source:HGNC Symbol;Acc:HGNC:10555]
63. CENPK ENSGALG00000014753 12414 0.76 - - - - - - - 0.760 - - centromere protein K [Source:NCBI gene;Acc:427162]
64. CRABP2 ENSGALG00000029140 559 0.759 - - 0.759 - - - - - - - cellular retinoic acid binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2339]
65. PDS5A ENSGALG00000014286 13077 0.754 - - - - - - 0.754 - - - PDS5 cohesin associated factor A [Source:NCBI gene;Acc:422787]
66. WBP2 ENSGALG00000002219 756 0.754 - - 0.754 - - - - - - - WW domain binding protein 2 [Source:NCBI gene;Acc:417368]
67. UBR7 ENSGALG00000010842 16488 0.753 - - 0.753 - - - - - - - Gallus gallus ubiquitin protein ligase E3 component n-recognin 7 (putative) (UBR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001318461]
68. INTS7 ENSGALG00000009843 2395 0.753 - - - - - - - 0.753 - - integrator complex subunit 7 [Source:NCBI gene;Acc:421374]
69. THBS1 ENSGALG00000009626 3521 0.751 - - - - - - - 0.751 - - thrombospondin 1 [Source:NCBI gene;Acc:373987]
70. HERC2 ENSGALG00000016739 9900 0.75 - - 0.750 - - - - - - - HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:418682]
71. C9orf85 ENSGALG00000026001 4110 0.749 - - - - - - 0.749 - - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
72. EFNB1 ENSGALG00000036539 2706 0.749 - - - - - - 0.749 - - - ephrin B1 [Source:NCBI gene;Acc:395896]
73. PIGL ENSGALG00000004492 669 0.749 - - - - - - 0.749 - - - phosphatidylinositol glycan anchor biosynthesis class L, transcript variant X4
74. FXYD6 ENSGALG00000025937 4073 0.748 - - - - - - 0.748 - - - FXYD domain containing ion transport regulator 6 [Source:NCBI gene;Acc:770406]
75. FAM86A FAM86A 1860 0.747 - - - - - - 0.747 - - -
76. HGS ENSGALG00000007224 3487 0.746 - - 0.746 - - - - - - - hepatocyte growth factor-regulated tyrosine kinase substrate [Source:HGNC Symbol;Acc:HGNC:4897]
77. DJ-1 DJ-1 13462 0.745 - - - - - - - 0.745 - -
78. RCAN1 ENSGALG00000016014 95 0.745 - - 0.745 - - - - - - - regulator of calcineurin 1 [Source:NCBI gene;Acc:418510]
79. IWS1 ENSGALG00000001803 2305 0.745 - - - - - - 0.745 - - - IWS1, SUPT6H interacting protein [Source:HGNC Symbol;Acc:HGNC:25467]
80. ANGPTL2 ENSGALG00000000927 2580 0.745 - - - - - - 0.745 - - - angiopoietin-like 2 [Source:NCBI gene;Acc:776031]
81. CTSL2 CTSL2 7966 0.745 - - - - - - - 0.745 - -
82. C11H19ORF12 C11H19ORF12 5149 0.744 - - - - - - 0.744 - - -
83. EIF3L ENSGALG00000012296 42627 0.744 - - - - - - 0.744 - - - eukaryotic translation initiation factor 3 subunit L [Source:NCBI gene;Acc:418033]
84. TUFT1 ENSGALG00000032955 1317 0.744 - - - - - - 0.744 - - - tuftelin 1 [Source:HGNC Symbol;Acc:HGNC:12422]
85. BLMH ENSGALG00000004259 36907 0.744 - - - - - - - 0.744 - - bleomycin hydrolase [Source:NCBI gene;Acc:395996]
86. MRPL47 ENSGALG00000013759 9044 0.744 - - - - - - - 0.744 - - mitochondrial ribosomal protein L47 [Source:HGNC Symbol;Acc:HGNC:16652]
87. COBRA1 COBRA1 4600 0.743 - - - - - - - 0.743 - -
88. MRM1 ENSGALG00000039523 2009 0.743 - - - - - - 0.743 - - - mitochondrial rRNA methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26202]
89. PGRMC1 ENSGALG00000020260 19059 0.743 - - - - - - 0.743 - - - progesterone receptor membrane component 1 [Source:NCBI gene;Acc:772196]
90. FDFT1 ENSGALG00000016665 3053 0.742 - - - - - - 0.742 - - - farnesyl-diphosphate farnesyltransferase 1 [Source:NCBI gene;Acc:422038]
91. OSBPL8 ENSGALG00000010246 4565 0.742 - - - - - - 0.742 - - - oxysterol binding protein like 8 [Source:HGNC Symbol;Acc:HGNC:16396]
92. TTI1 ENSGALG00000006791 1218 0.742 - - - - - - 0.742 - - - TELO2 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:29029]
93. TNFRSF11B ENSGALG00000043167 911 0.742 - - - - - - 0.742 - - - TNF receptor superfamily member 11b [Source:NCBI gene;Acc:378803]
94. FANCB ENSGALG00000016569 1193 0.742 - - 0.742 - - - - - - - FA complementation group B [Source:NCBI gene;Acc:418628]
95. ACTR10 ENSGALG00000012041 2752 0.742 - - - - - - 0.742 - - - actin-related protein 10 homolog [Source:NCBI gene;Acc:423543]
96. ACVR1 ENSGALG00000037301 6448 0.742 - - 0.742 - - - - - - - activin A receptor type 1 [Source:NCBI gene;Acc:395246]
97. ARFGEF1 ENSGALG00000034610 238 0.742 - - 0.742 - - - - - - - ADP ribosylation factor guanine nucleotide exchange factor 1 [Source:HGNC Symbol;Acc:HGNC:15772]
98. MYH15 ENSGALG00000015358 6304 0.741 - - - - - - 0.741 - - - myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
99. ESCO1 ENSGALG00000014936 739 0.741 - - - - - - 0.741 - - - establishment of sister chromatid cohesion N-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24645]
100. TP53BP1 ENSGALG00000042201 708 0.74 - - - - - - 0.740 - - - tumor protein p53 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11999]

There are 140 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA