Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for RAI1

Gene Name Gene ID Reads Annotation
RAI1 ENSDARG00000076679 59 retinoic acid induced 1 [Source:ZFIN;Acc:ZDB-GENE-101203-2]










Genes with expression patterns similar to RAI1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. RAI1 ENSDARG00000076679 59 8 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 retinoic acid induced 1 [Source:ZFIN;Acc:ZDB-GENE-101203-2]
2. VOPP1 ENSDARG00000076373 12 1.74 0.872 - 0.868 - - - - - - VOPP1, WBP1/VOPP1 family member [Source:ZFIN;Acc:ZDB-GENE-091204-64]
3. BSN_1 BSN_1 21 1.738 - - 0.738 - - 1.000 - - -
4. fsd1 ENSDARG00000062017 207 1.709 - - - 0.860 - 0.849 - - - fibronectin type III and SPRY domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-218]
5. ccdc170 ENSDARG00000016161 18 1.7 0.705 - - 0.995 - - - - - coiled-coil domain containing 170 [Source:ZFIN;Acc:ZDB-GENE-070112-162]
6. CABZ01073654.1 CABZ01073654.1 16 1.659 - - - - - 0.746 0.913 - -
7. gpr88 24 1.658 - - 0.725 - 0.933 - - - - G protein-coupled receptor 88
8. traf1 ENSDARG00000069482 50 1.64 - - - 0.921 - - 0.719 - - TNF receptor-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-071120-4]
9. si:dkey-284p5.3 ENSDARG00000095638 4 1.614 - - 0.868 - - 0.746 - - - si:dkey-284p5.3 [Source:ZFIN;Acc:ZDB-GENE-060503-352]
10. PRKCA_1 ENSDARG00000099841 12 1.614 - - 0.868 - - 0.746 - - - protein kinase C alpha [Source:HGNC Symbol;Acc:HGNC:9393]
11. shank3a ENSDARG00000063332 5 1.614 - - 0.868 - - 0.746 - - - SH3 and multiple ankyrin repeat domains 3a [Source:ZFIN;Acc:ZDB-GENE-060503-369]
12. g6pc3 ENSDARG00000020371 152 1.605 - - - 0.890 - - 0.715 - - glucose 6 phosphatase, catalytic, 3 [Source:ZFIN;Acc:ZDB-GENE-061215-19]
13. GALNTL6 ENSDARG00000040048 33 1.591 0.872 - - - - - 0.719 - - polypeptide N-acetylgalactosaminyltransferase like 6 [Source:HGNC Symbol;Acc:HGNC:33844]
14. lratb 3 1.587 - - 0.868 - - - 0.719 - - lecithin retinol acyltransferase b (phosphatidylcholine-retinol O-acyltransferase), transcript variant X2
15. ENSDARG00000087581 ENSDARG00000087581 2 1.573 0.705 - 0.868 - - - - - -
16. zgc:136639os zgc:136639os 2 1.573 0.705 - 0.868 - - - - - -
17. si:dkey-149m13.4 ENSDARG00000114536 2 1.573 0.705 - 0.868 - - - - - - si:dkey-149m13.4 [Source:ZFIN;Acc:ZDB-GENE-110914-34]
18. sirt5 ENSDARG00000039684 472 1.52 - - - 0.770 0.750 - - - - sirtuin 5 [Source:ZFIN;Acc:ZDB-GENE-040718-349]
19. armc7 ENSDARG00000061197 310 1.514 0.729 - - - - - 0.785 - - armadillo repeat containing 7 [Source:ZFIN;Acc:ZDB-GENE-060929-288]
20. papd7 263 1.513 0.779 - - - - - 0.734 - - PAP associated domain containing 7, transcript variant X2
21. si:ch211-203k16.3 ENSDARG00000069305 21 1.484 0.705 - - 0.779 - - - - - si:ch211-203k16.3 [Source:ZFIN;Acc:ZDB-GENE-041014-290]
22. tbcela ENSDARG00000002682 1179 1.472 0.737 - - - 0.735 - - - - tubulin folding cofactor E-like a [Source:ZFIN;Acc:ZDB-GENE-040426-1719]
23. cyp2n13 ENSDARG00000042953 10 1.465 - - - - - 0.746 0.719 - - cytochrome P450, family 2, subfamily N, polypeptide 13 [Source:ZFIN;Acc:ZDB-GENE-041001-158]
24. l3mbtl2 ENSDARG00000056079, ENSDARG00000116037 1645 1.464 0.709 - - - - - 0.755 - - l(3)mbt-like 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-8713]
25. pygo1 ENSDARG00000098687 4 1.451 0.705 - - - - 0.746 - - - pygopus family PHD finger 1 [Source:ZFIN;Acc:ZDB-GENE-080204-62]
26. CABZ01002626.1 CABZ01002626.1 29 1.424 0.705 - - - - - 0.719 - -
27. pth2r ENSDARG00000006678, ENSDARG00000112414 46 1.424 0.705 - - - - - 0.719 - - parathyroid hormone 2 receptor [Source:ZFIN;Acc:ZDB-GENE-991123-10]
28. tph1b ENSDARG00000036082, ENSDARG00000112888 79 1 - - - - - 1.000 - - - tryptophan hydroxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030805-6]
29. BX571853.2 ENSDARG00000110441 21 1 - - - - - 1.000 - - -
30. trim35-1 ENSDARG00000052037 43 1 - - - - - 1.000 - - - tripartite motif containing 35-1 [Source:ZFIN;Acc:ZDB-GENE-050522-17]
31. prox1b ENSDARG00000088810, ENSDARG00000113014 33 1 - - - - - 1.000 - - - prospero homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050107-3]
32. si:dkey-77f17.1 si:dkey-77f17.1 83 1 - - - - - 1.000 - - -
33. KIF21B ENSDARG00000009733 53 1 - - - - - 1.000 - - - kinesin family member 21B [Source:ZFIN;Acc:ZDB-GENE-130530-537]
34. CU695076.1 CU695076.1 7 1 - - - - - 1.000 - - -
35. foxb1b ENSDARG00000053650, ENSDARG00000110408, ENSDARG00000113373 51 1 - - - - - 1.000 - - - forkhead box B1b [Source:ZFIN;Acc:ZDB-GENE-990415-77]
36. atp8b1 ENSDARG00000060980 181 1 - - - - - 1.000 - - - ATPase phospholipid transporting 8B1 [Source:ZFIN;Acc:ZDB-GENE-091116-14]
37. CU570981.1 CU570981.1 9 0.995 - - - 0.995 - - - - -
38. ccdc42b ccdc42b 18 0.995 - - - 0.995 - - - - -
39. BX005356.3 BX005356.3 4 0.995 - - - 0.995 - - - - -
40. GPR22_1 GPR22_1 28 0.995 - - - 0.995 - - - - -
41. Metazoa_SRP_10 Metazoa_SRP_10 5 0.995 - - - 0.995 - - - - -
42. cx28.9 ENSDARG00000041797 12 0.995 - - - 0.995 - - - - - connexin 28.9 [Source:ZFIN;Acc:ZDB-GENE-041114-200]
43. FDFT1 ENSDARG00000101062 6 0.995 - - - 0.995 - - - - - farnesyl-diphosphate farnesyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-081104-242]
44. ccdc33 ENSDARG00000051858 11 0.992 - - - 0.992 - - - - - coiled-coil domain containing 33 [Source:ZFIN;Acc:ZDB-GENE-101011-1]
45. si:ch211-149a19.3 ENSDARG00000079456 115 0.988 - - - - 0.988 - - - - si:ch211-149a19.3 [Source:ZFIN;Acc:ZDB-GENE-081104-128]
46. arhgef10 ENSDARG00000077788 28 0.987 - - - 0.987 - - - - - Rho guanine nucleotide exchange factor (GEF) 10 [Source:ZFIN;Acc:ZDB-GENE-030131-6210]
47. fam26f 595 0.981 - - - - 0.981 - - - - family with sequence similarity 26, member F
48. C9HXorf36 C9HXorf36 44 0.959 - - - - - - 0.959 - -
49. FUK ENSDARG00000032650 20 0.959 - - - - - - 0.959 - - fucokinase [Source:ZFIN;Acc:ZDB-GENE-110819-1]
50. si:dkey-189o20.1 si:dkey-189o20.1 47 0.959 - - - - - - 0.959 - -
51. hsp70l_1 ENSDARG00000055723 72 0.959 - - - - - - 0.959 - - heat shock cognate 70-kd protein, like [Source:ZFIN;Acc:ZDB-GENE-050321-1]
52. CABZ01048373.1 CABZ01048373.1 81 0.958 0.958 - - - - - - - -
53. si:ch211-216b21.2 ENSDARG00000060253 54 0.95 - - - - - 0.950 - - - si:ch211-216b21.2 [Source:ZFIN;Acc:ZDB-GENE-130603-96]
54. pcdh8 ENSDARG00000006467 317 0.95 - - - - - 0.950 - - - protocadherin 8 [Source:ZFIN;Acc:ZDB-GENE-980526-242]
55. tcf3a ENSDARG00000005915 12 0.946 - - 0.946 - - - - - - transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-51]
56. b3gnt3.2 ENSDARG00000054373 16 0.943 - - - - - - 0.943 - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3, tendem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-081104-528]
57. C1H20orf27 C1H20orf27 69 0.942 - - - - - 0.942 - - -
58. KCNK17 ENSDARG00000105453 16 0.941 - - - - - 0.941 - - - potassium channel, subfamily K, member 17 [Source:ZFIN;Acc:ZDB-GENE-120113-3]
59. zgc:158852 ENSDARG00000102076 65 0.937 - - - - 0.937 - - - - zgc:158852 [Source:ZFIN;Acc:ZDB-GENE-070112-972]
60. CCDC83 ENSDARG00000077179 29 0.937 - - - 0.937 - - - - - coiled-coil domain containing 83 [Source:ZFIN;Acc:ZDB-GENE-130723-1]
61. mir457b 21 0.937 - - - - 0.937 - - - - microRNA 457b
62. GTPBP6 ENSDARG00000061091 29 0.936 - - - - 0.936 - - - - GTP binding protein 6 (putative) [Source:ZFIN;Acc:ZDB-GENE-031118-62]
63. si:dkey-7a20.9 si:dkey-7a20.9 154 0.935 - - - - - - 0.935 - -
64. lim2.2 ENSDARG00000059015 11 0.933 - - - 0.933 - - - - - lens intrinsic membrane protein 2.2 [Source:ZFIN;Acc:ZDB-GENE-060124-1]
65. PLCXD1 ENSDARG00000088798 23 0.933 - - - 0.933 - - - - - phosphatidylinositol-specific phospholipase C, X domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-131127-240]
66. fbxo43 ENSDARG00000104186 40 0.932 - - - 0.932 - - - - - F-box protein 43 [Source:ZFIN;Acc:ZDB-GENE-040426-1645]
67. MAP4K2 ENSDARG00000001234 39 0.932 - - - - 0.932 - - - - mitogen-activated protein kinase kinase kinase kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030616-163]
68. CU694256.1 ENSDARG00000097007 290 0.931 - - - - 0.931 - - - -
69. wfikkn2b ENSDARG00000059139 45 0.93 - - - - 0.930 - - - - WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-110414-1]
70. slc16a6a ENSDARG00000102793 60 0.929 - - - - 0.929 - - - - solute carrier family 16, member 6a [Source:ZFIN;Acc:ZDB-GENE-110208-1]
71. C5H11orf1 C5H11orf1 78 0.929 - - - - 0.929 - - - -
72. pax6l pax6l 54 0.929 - - - - 0.929 - - - -
73. CABZ01071911.2 CABZ01071911.2 64 0.928 0.928 - - - - - - - -
74. shank2 ENSDARG00000062325 66 0.927 - - - - 0.927 - - - - SH3 and multiple ankyrin repeat domains 2 [Source:ZFIN;Acc:ZDB-GENE-061207-58]
75. si:dkey-102m7.3 ENSDARG00000100366 27 0.927 - - - - 0.927 - - - - si:dkey-102m7.3 [Source:ZFIN;Acc:ZDB-GENE-091204-389]
76. cdh18 cdh18 64 0.924 - - - - - - 0.924 - -
77. si:dkey-15h8.12 si:dkey-15h8.12 206 0.924 - - - - - - 0.924 - -
78. sstr3 ENSDARG00000014477 14 0.923 - - - 0.923 - - - - - somatostatin receptor 3 [Source:ZFIN;Acc:ZDB-GENE-061009-35]
79. ddx26b 79 0.922 - - - - 0.922 - - - - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B, transcript variant X1
80. ebf1b ENSDARG00000069196 64 0.921 - - - - - 0.921 - - - early B cell factor 1b [Source:ZFIN;Acc:ZDB-GENE-090814-2]
81. glcea ENSDARG00000005095 33 0.921 - - - - - 0.921 - - - glucuronic acid epimerase a [Source:ZFIN;Acc:ZDB-GENE-040630-9]
82. WIPF1 WIPF1 32 0.921 - - - - 0.921 - - - -
83. RBPMS ENSDARG00000099396 61 0.92 - - - - 0.920 - - - - RNA binding protein, mRNA processing factor [Source:ZFIN;Acc:ZDB-GENE-161017-145]
84. wsb2 ENSDARG00000058608 11 0.92 - - - 0.920 - - - - - WD repeat and SOCS box containing 2 [Source:ZFIN;Acc:ZDB-GENE-081104-26]
85. PHC3 ENSDARG00000074604 239 0.919 0.919 - - - - - - - - polyhomeotic homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070912-369]
86. zgc:173709 86 0.918 - - - - 0.918 - - - - zgc:173709
87. nrg2b ENSDARG00000086585 100 0.917 - - - - - 0.917 - - - neuregulin 2b [Source:ZFIN;Acc:ZDB-GENE-090205-2]
88. nlgn3b ENSDARG00000062376 171 0.916 - - - - 0.916 - - - - neuroligin 3b [Source:ZFIN;Acc:ZDB-GENE-060526-197]
89. si:dkey-14d8.9 si:dkey-14d8.9 66 0.913 - - - - 0.913 - - - -
90. ntsr1 ENSDARG00000077577, ENSDARG00000112950 14 0.913 - - - 0.913 - - - - - neurotensin receptor 1 (high affinity) [Source:ZFIN;Acc:ZDB-GENE-090313-372]
91. si:ch211-110p13.9 ENSDARG00000093821 82 0.913 - - - - 0.913 - - - - si:ch211-110p13.9 [Source:ZFIN;Acc:ZDB-GENE-060526-9]
92. gsg1l ENSDARG00000037390 181 0.912 - - - 0.912 - - - - - gsg1-like [Source:ZFIN;Acc:ZDB-GENE-050913-27]
93. cep57l1 ENSDARG00000002826 521 0.911 - - - - 0.911 - - - - centrosomal protein 57, like 1 [Source:ZFIN;Acc:ZDB-GENE-040808-27]
94. mafb ENSDARG00000076520 139 0.911 - - - - 0.911 - - - - v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog b (paralog b) [Source:ZFIN;Acc:ZDB-GENE-141211-38]
95. si:dkey-114c15.7 237 0.91 0.910 - - - - - - - - si:dkey-114c15.7
96. rapgef5a ENSDARG00000075271 282 0.91 - - - - 0.910 - - - - Rap guanine nucleotide exchange factor (GEF) 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7681]
97. P2RY13 ENSDARG00000069944 11 0.91 - - - - - - 0.910 - - purinergic receptor P2Y13 [Source:ZFIN;Acc:ZDB-GENE-110208-5]
98. zgc:153911 ENSDARG00000002509 110 0.906 - - - 0.906 - - - - - zgc:153911 [Source:ZFIN;Acc:ZDB-GENE-061013-174]
99. FUT9 FUT9 91 0.906 - - - - - 0.906 - - -
100. ropn1l ENSDARG00000058370, ENSDARG00000114122 57 0.905 - - - 0.905 - - - - - rhophilin associated tail protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040724-235]

There are 1009 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA