Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RAB3IP

Gene Name Gene ID Reads Annotation
RAB3IP ENSGALG00000009959 1652 RAB3A interacting protein, transcript variant X1











Genes with expression patterns similar to RAB3IP

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RAB3IP ENSGALG00000009959 1652 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RAB3A interacting protein, transcript variant X1
2. TUBA4A ENSGALG00000000433 1367 1.694 - - 0.918 - - - 0.776 - - - tubulin alpha 4a
3. SELM SELM 6366 1.669 - - 0.908 - - - 0.761 - - -
4. CSTF3 ENSGALG00000011685 4711 1.664 - - 0.817 - - - 0.847 - - - cleavage stimulation factor subunit 3 [Source:NCBI gene;Acc:421595]
5. SQLE ENSGALG00000036915 4172 1.65 - - 0.916 - - - 0.734 - - - squalene epoxidase [Source:NCBI gene;Acc:420335]
6. SPG11 ENSGALG00000008180 1890 1.621 - - 0.815 - - - 0.806 - - - SPG11, spatacsin vesicle trafficking associated [Source:HGNC Symbol;Acc:HGNC:11226]
7. RNF20 ENSGALG00000015548 7199 1.618 - - 0.813 - - - 0.805 - - - ring finger protein 20 [Source:NCBI gene;Acc:427310]
8. MBNL1 ENSGALG00000029190 3953 1.585 - - 0.811 - - - 0.774 - - - muscleblind like splicing regulator 1 [Source:NCBI gene;Acc:425033]
9. PMPCB ENSGALG00000008280 6357 1.538 - - 0.710 - - - 0.828 - - - peptidase, mitochondrial processing beta subunit [Source:NCBI gene;Acc:417718]
10. URM1 ENSGALG00000004971 17880 1.535 - - 0.831 - - - 0.704 - - - ubiquitin related modifier 1 [Source:NCBI gene;Acc:417221]
11. ZNF451 ENSGALG00000016282 3380 1.515 - - 0.799 - - - 0.716 - - - zinc finger protein 451 [Source:HGNC Symbol;Acc:HGNC:21091]
12. RALGAPA2 240 0.97 - - 0.970 - - - - - - - Ral GTPase activating protein, alpha subunit 2 (catalytic), transcript variant X6
13. PPME1 ENSGALG00000017312 2634 0.957 - - 0.957 - - - - - - - protein phosphatase methylesterase 1 [Source:NCBI gene;Acc:419058]
14. STXBP6 ENSGALG00000009847 224 0.956 - - 0.956 - - - - - - - syntaxin binding protein 6 [Source:NCBI gene;Acc:423299]
15. RFK ENSGALG00000033558 1364 0.95 - - 0.950 - - - - - - - riboflavin kinase, transcript variant X3
16. MAPRE3 ENSGALG00000031726 191 0.948 - - 0.948 - - - - - - - microtubule associated protein RP/EB family member 3 [Source:HGNC Symbol;Acc:HGNC:6892]
17. RECQL ENSGALG00000013174 1323 0.946 - - 0.946 - - - - - - - RecQ like helicase [Source:NCBI gene;Acc:378910]
18. TMEM242 ENSGALG00000013689 377 0.944 - - 0.944 - - - - - - - transmembrane protein 242 [Source:HGNC Symbol;Acc:HGNC:17206]
19. STAMBP ENSGALG00000042555 1362 0.943 - - 0.943 - - - - - - - STAM binding protein [Source:HGNC Symbol;Acc:HGNC:16950]
20. SNX14 ENSGALG00000015831 2554 0.943 - - 0.943 - - - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
21. C18orf8 C18orf8 1512 0.941 - - 0.941 - - - - - - -
22. ENSGALG00000015857 ENSGALG00000015857 238 0.94 - - - - - - 0.940 - - -
23. MRPS33 ENSGALG00000028879 17966 0.939 - - 0.939 - - - - - - - mitochondrial ribosomal protein S33 [Source:NCBI gene;Acc:418119]
24. PSMD14 ENSGALG00000011128 13335 0.937 - - 0.937 - - - - - - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
25. KCTD10 ENSGALG00000005138 1191 0.934 - - 0.934 - - - - - - - potassium channel tetramerization domain containing 10 [Source:HGNC Symbol;Acc:HGNC:23236]
26. ATF7IP ENSGALG00000011814 1571 0.932 - - 0.932 - - - - - - - activating transcription factor 7 interacting protein [Source:NCBI gene;Acc:417966]
27. AKT3 ENSGALG00000034081 866 0.931 - - 0.931 - - - - - - - AKT serine/threonine kinase 3 [Source:HGNC Symbol;Acc:HGNC:393]
28. ATG4B ENSGALG00000006298 2288 0.93 - - - - - - 0.930 - - - autophagy related 4B cysteine peptidase [Source:NCBI gene;Acc:404750]
29. SMARCAD1 ENSGALG00000037339 149 0.928 - - 0.928 - - - - - - - SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 [Source:HGNC Symbol;Acc:HGNC:18398]
30. NXPE3 ENSGALG00000015344 111 0.928 - - 0.928 - - - - - - - neurexophilin and PC-esterase domain family member 3 [Source:HGNC Symbol;Acc:HGNC:28238]
31. BAG5 ENSGALG00000031062 4498 0.927 - - 0.927 - - - - - - - BCL2 associated athanogene 5 [Source:NCBI gene;Acc:423482]
32. ENSGALG00000020103 ENSGALG00000020103 64 0.927 - - 0.927 - - - - - - -
33. ITGB4 ENSGALG00000002389 44 0.926 - - 0.926 - - - - - - - integrin subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
34. TCTN2 ENSGALG00000023683 3596 0.926 - - 0.926 - - - - - - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
35. RQCD1 RQCD1 110 0.926 - - 0.926 - - - - - - -
36. SZT2 ENSGALG00000028561 255 0.926 - - 0.926 - - - - - - - seizure threshold 2 homolog (mouse) [Source:NCBI gene;Acc:424566]
37. TDRD6 48 0.926 - - 0.926 - - - - - - - tudor domain containing 6
38. UEVLD ENSGALG00000006342 164 0.926 - - 0.926 - - - - - - - UEV and lactate/malate dehyrogenase domains [Source:NCBI gene;Acc:100858486]
39. ABCE1 ENSGALG00000009961 958 0.926 - - 0.926 - - - - - - - ATP binding cassette subfamily E member 1 [Source:NCBI gene;Acc:422462]
40. ENSGALG00000028964 ENSGALG00000028964 46 0.926 - - 0.926 - - - - - - -
41. MRC2 ENSGALG00000000461 48 0.926 - - 0.926 - - - - - - - mannose receptor C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
42. CDC14B ENSGALG00000012627 110 0.925 - - 0.925 - - - - - - - Gallus gallus cell division cycle 14B (CDC14B), mRNA. [Source:RefSeq mRNA;Acc:NM_001318405]
43. WAPAL WAPAL 625 0.925 - - 0.925 - - - - - - -
44. PTDSS2 ENSGALG00000004300 682 0.925 - - 0.925 - - - - - - - phosphatidylserine synthase 2 [Source:NCBI gene;Acc:422997]
45. RAD54L2 ENSGALG00000003243 187 0.925 - - 0.925 - - - - - - - RAD54-like 2 (S. cerevisiae) [Source:NCBI gene;Acc:415933]
46. GDPD4 ENSGALG00000000690 824 0.925 - - 0.925 - - - - - - - glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
47. ENSGALG00000004703 ENSGALG00000004703 112 0.924 - - 0.924 - - - - - - -
48. MED12 ENSGALG00000036322 814 0.924 - - 0.924 - - - - - - - mediator complex subunit 12 [Source:HGNC Symbol;Acc:HGNC:11957]
49. CLEC16A ENSGALG00000007167 66 0.924 - - 0.924 - - - - - - - C-type lectin domain containing 16A [Source:HGNC Symbol;Acc:HGNC:29013]
50. IFT81 ENSGALG00000003854 2534 0.923 - - 0.923 - - - - - - - intraflagellar transport 81 [Source:NCBI gene;Acc:416839]
51. CALSYNTENIN-1 CALSYNTENIN-1 11195 0.923 - - 0.923 - - - - - - -
52. BBX ENSGALG00000015353 1281 0.923 - - 0.923 - - - - - - - BBX, HMG-box containing [Source:HGNC Symbol;Acc:HGNC:14422]
53. RPS6KB1 ENSGALG00000005198 169 0.923 - - 0.923 - - - - - - - ribosomal protein S6 kinase B1 [Source:NCBI gene;Acc:417637]
54. BBS5 ENSGALG00000009846 344 0.923 - - 0.923 - - - - - - - Bardet-Biedl syndrome 5 [Source:NCBI gene;Acc:424165]
55. AKAP10 ENSGALG00000004679 103 0.923 - - 0.923 - - - - - - - A-kinase anchoring protein 10 [Source:HGNC Symbol;Acc:HGNC:368]
56. GTF2H2 ENSGALG00000002399 2361 0.922 - - 0.922 - - - - - - - general transcription factor IIH subunit 2, transcript variant X2
57. SLC3A1 ENSGALG00000009973 608 0.922 - - 0.922 - - - - - - - solute carrier family 3 member 1 [Source:HGNC Symbol;Acc:HGNC:11025]
58. L3MBTL3 ENSGALG00000034030 113 0.922 - - 0.922 - - - - - - - L3MBTL3, histone methyl-lysine binding protein [Source:HGNC Symbol;Acc:HGNC:23035]
59. LRRC71 ENSGALG00000027351 695 0.922 - - 0.922 - - - - - - - leucine rich repeat containing 71 [Source:HGNC Symbol;Acc:HGNC:26556]
60. ABCC3 ENSGALG00000007522 340 0.921 - - 0.921 - - - - - - - ATP binding cassette subfamily C member 3, transcript variant X5
61. ITM2B ENSGALG00000016996 1112 0.921 - - 0.921 - - - - - - - integral membrane protein 2B [Source:NCBI gene;Acc:395969]
62. ENSGALG00000002020 ENSGALG00000002020 183 0.921 - - 0.921 - - - - - - -
63. TRIM13 ENSGALG00000017011 92 0.921 - - 0.921 - - - - - - - tripartite motif containing 13 [Source:HGNC Symbol;Acc:HGNC:9976]
64. FBXL5 ENSGALG00000014510 245 0.921 - - 0.921 - - - - - - - F-box and leucine rich repeat protein 5 [Source:HGNC Symbol;Acc:HGNC:13602]
65. F2R ENSGALG00000014983 106 0.921 - - 0.921 - - - - - - - coagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]
66. U4 U4 69 0.921 - - 0.921 - - - - - - -
67. FTD FTD 3041 0.92 - - 0.920 - - - - - - -
68. C13H5ORF41 C13H5ORF41 1051 0.92 - - - - - - 0.920 - - -
69. LRRC42 ENSGALG00000010743 384 0.92 - - 0.920 - - - - - - - leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:HGNC:28792]
70. UCH-L1 UCH-L1 12697 0.92 - - - - - - 0.920 - - -
71. ZNF142 ENSGALG00000011393 2078 0.919 - - - - - - 0.919 - - - zinc finger protein 142 [Source:HGNC Symbol;Acc:HGNC:12927]
72. OSGIN2 ENSGALG00000042840 83 0.919 - - 0.919 - - - - - - - oxidative stress induced growth inhibitor family member 2 [Source:HGNC Symbol;Acc:HGNC:1355]
73. CA9 ENSGALG00000021340 1431 0.919 - - 0.919 - - - - - - - carbonic anhydrase 9 [Source:HGNC Symbol;Acc:HGNC:1383]
74. CENPO ENSGALG00000016609 1699 0.918 - - 0.918 - - - - - - - centromere protein O [Source:NCBI gene;Acc:422014]
75. PTCD3 ENSGALG00000015773 3059 0.918 - - 0.918 - - - - - - - pentatricopeptide repeat domain 3 [Source:HGNC Symbol;Acc:HGNC:24717]
76. BRD1 ENSGALG00000029379 6047 0.918 - - - - - - 0.918 - - - bromodomain containing 1 [Source:NCBI gene;Acc:417731]
77. DBN1 ENSGALG00000033405 216 0.918 - - 0.918 - - - - - - - drebrin 1 [Source:NCBI gene;Acc:396496]
78. FAM134C 860 0.915 - - 0.915 - - - - - - - family with sequence similarity 134 member C
79. PRUNE PRUNE 452 0.915 - - 0.915 - - - - - - -
80. CHAMP1 ENSGALG00000016813 508 0.915 - - 0.915 - - - - - - - chromosome alignment maintaining phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:20311]
81. KCTD3 ENSGALG00000009678 335 0.913 - - 0.913 - - - - - - - potassium channel tetramerization domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21305]
82. ZNF385D ENSGALG00000011283 2578 0.912 - - 0.912 - - - - - - - zinc finger protein 385D [Source:HGNC Symbol;Acc:HGNC:26191]
83. ADK ENSGALG00000005057 199 0.912 - - 0.912 - - - - - - - adenosine kinase [Source:NCBI gene;Acc:423735]
84. PAM16 9684 0.91 - - - - - - 0.910 - - - presequence translocase associated motor 16 homolog, transcript variant X2
85. ATP10D ENSGALG00000014192 94 0.91 - - 0.910 - - - - - - - ATPase phospholipid transporting 10D (putative) [Source:HGNC Symbol;Acc:HGNC:13549]
86. MLLT3 ENSGALG00000015078 502 0.909 - - 0.909 - - - - - - - MLLT3, super elongation complex subunit [Source:HGNC Symbol;Acc:HGNC:7136]
87. CHGA ENSGALG00000010820 1028 0.909 - - 0.909 - - - - - - - chromogranin A [Source:HGNC Symbol;Acc:HGNC:1929]
88. HPS5 ENSGALG00000027716 2466 0.908 - - 0.908 - - - - - - - HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
89. AASDHPPT ENSGALG00000027981 1017 0.908 - - 0.908 - - - - - - - aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase [Source:NCBI gene;Acc:418975]
90. AMBRA1 ENSGALG00000008358 2865 0.908 - - 0.908 - - - - - - - autophagy and beclin 1 regulator 1 [Source:HGNC Symbol;Acc:HGNC:25990]
91. HOXA7 ENSGALG00000026989 6746 0.908 - - 0.908 - - - - - - - homeobox A7 [Source:NCBI gene;Acc:395290]
92. SLK ENSGALG00000008318 2220 0.907 - - 0.907 - - - - - - - STE20 like kinase [Source:HGNC Symbol;Acc:HGNC:11088]
93. NACAD 679 0.907 - - 0.907 - - - - - - - NAC alpha domain containing, transcript variant X1
94. NDC80 ENSGALG00000014801 3237 0.906 - - 0.906 - - - - - - - NDC80, kinetochore complex component [Source:NCBI gene;Acc:395134]
95. ATP8B4 ENSGALG00000002326 456 0.906 - - 0.906 - - - - - - - ATPase phospholipid transporting 8B4 (putative), transcript variant X4
96. TUBGCP3 ENSGALG00000016836 332 0.906 - - 0.906 - - - - - - - tubulin gamma complex associated protein 3 [Source:HGNC Symbol;Acc:HGNC:18598]
97. HOXB5 ENSGALG00000034907 3646 0.905 - - 0.905 - - - - - - - homeobox B5 [Source:NCBI gene;Acc:425096]
98. NDUFV3 ENSGALG00000022813 4456 0.905 - - - - - - 0.905 - - - NADH:ubiquinone oxidoreductase subunit V3 [Source:NCBI gene;Acc:418541]
99. SOBP ENSGALG00000043047 147 0.904 - - 0.904 - - - - - - - sine oculis binding protein homolog [Source:NCBI gene;Acc:421775]
100. KANK4 ENSGALG00000010953 726 0.904 - - - - - - 0.904 - - - KN motif and ankyrin repeat domains 4 [Source:HGNC Symbol;Acc:HGNC:27263]

There are 589 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA