Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RAB1A

Gene Name Gene ID Reads Annotation
RAB1A ENSGALG00000031582 6929 RAB1A, member RAS oncogene family [Source:NCBI gene;Acc:421273]











Genes with expression patterns similar to RAB1A

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RAB1A ENSGALG00000031582 6929 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RAB1A, member RAS oncogene family [Source:NCBI gene;Acc:421273]
2. NAP1L1 ENSGALG00000010238 14506 2.296 0.834 - - - - - 0.759 - 0.703 - nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
3. TPR ENSGALG00000005105 2924 1.707 0.758 - - - - - 0.949 - - - translocated promoter region, nuclear basket protein [Source:HGNC Symbol;Acc:HGNC:12017]
4. RNF20 ENSGALG00000015548 7199 1.664 0.729 - - - - - 0.935 - - - ring finger protein 20 [Source:NCBI gene;Acc:427310]
5. MTDH ENSGALG00000034050 9525 1.653 0.802 - - - - - 0.851 - - - metadherin [Source:HGNC Symbol;Acc:HGNC:29608]
6. ITSN1 ENSGALG00000036677 5727 1.631 0.732 - - - - - 0.899 - - - intersectin 1 [Source:HGNC Symbol;Acc:HGNC:6183]
7. MED16 ENSGALG00000001978 2387 1.617 - - - - - - 0.900 0.717 - - mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
8. USP8 ENSGALG00000005894 4499 1.576 0.702 - - - - - 0.874 - - - ubiquitin specific peptidase 8 [Source:HGNC Symbol;Acc:HGNC:12631]
9. SRSF11 ENSGALG00000011305 10435 1.556 0.827 - - - - - - 0.729 - - serine and arginine rich splicing factor 11 [Source:NCBI gene;Acc:424714]
10. ANKRD17 ENSGALG00000011642 3192 1.479 0.766 - - - - - - - 0.713 - ankyrin repeat domain 17 [Source:HGNC Symbol;Acc:HGNC:23575]
11. ENTPD8L ENSGALG00000008936 731 0.968 - - - - - - 0.968 - - - ectonucleoside triphosphate diphosphohydrolase 8-like
12. MESDC1 1013 0.967 - - - - - - 0.967 - - - mesoderm development candidate 1
13. ENSGALG00000013233 ENSGALG00000013233 3265 0.965 - - - - - - 0.965 - - -
14. NSRP1 ENSGALG00000004186 1683 0.964 - - - - - - 0.964 - - - nuclear speckle splicing regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:25305]
15. PTN ENSGALG00000040493 864 0.963 - - - - - - 0.963 - - - pleiotrophin [Source:NCBI gene;Acc:418125]
16. TCTE1 ENSGALG00000010165 65 0.959 - - - - - - 0.959 - - - t-complex-associated-testis-expressed 1 [Source:HGNC Symbol;Acc:HGNC:11693]
17. SCUBE1 ENSGALG00000014178 91 0.958 - - - - - - 0.958 - - - signal peptide, CUB domain and EGF like domain containing 1, transcript variant X4
18. ENSGALG00000016099 ENSGALG00000016099 138 0.958 - - - - - - 0.958 - - -
19. ENSGALG00000003619 ENSGALG00000003619 58 0.958 - - - - - - 0.958 - - -
20. FAM183A 242 0.958 - - - - - - 0.958 - - - family with sequence similarity 183 member A, transcript variant 2
21. WDSUB1 ENSGALG00000012574 2038 0.958 - - - - - - 0.958 - - - WD repeat, sterile alpha motif and U-box domain containing 1 [Source:NCBI gene;Acc:424331]
22. SNORA31 SNORA31 183 0.958 - - - - - - 0.958 - - -
23. ENSGALG00000026925 ENSGALG00000026925 119 0.957 - - - - - - 0.957 - - -
24. GRB14 ENSGALG00000020703 42 0.956 - - - - - - 0.956 - - - growth factor receptor bound protein 14 [Source:HGNC Symbol;Acc:HGNC:4565]
25. HEMK1 ENSGALG00000002253 40 0.956 - - - - - - 0.956 - - - HemK methyltransferase family member 1 [Source:HGNC Symbol;Acc:HGNC:24923]
26. METTL24 ENSGALG00000041120 60 0.956 - - - - - - 0.956 - - - methyltransferase like 24 [Source:HGNC Symbol;Acc:HGNC:21566]
27. MXRA5 ENSGALG00000016635 352 0.955 - - - - - - 0.955 - - - matrix remodeling associated 5 [Source:HGNC Symbol;Acc:HGNC:7539]
28. HESX1 ENSGALG00000005506 203 0.953 - - - - - - 0.953 - - - HESX homeobox 1 [Source:NCBI gene;Acc:395864]
29. DNAJC16 ENSGALG00000032832 750 0.952 - - - - - - 0.952 - - - DnaJ heat shock protein family (Hsp40) member C16 [Source:NCBI gene;Acc:429208]
30. GAS6 ENSGALG00000016820 481 0.949 - - - - - - 0.949 - - - growth arrest specific 6 [Source:HGNC Symbol;Acc:HGNC:4168]
31. PIK3R3 ENSGALG00000010335 374 0.948 - - - - - - 0.948 - - - phosphoinositide-3-kinase regulatory subunit 3, transcript variant X1
32. UPK3BL ENSGALG00000001885 1650 0.948 - - - - - - 0.948 - - - uroplakin 3B-like
33. TM2D3 ENSGALG00000026271 2566 0.947 - - - - - - 0.947 - - - TM2 domain containing 3 [Source:NCBI gene;Acc:415390]
34. NUP205 ENSGALG00000011662 4157 0.946 - - - - - - 0.946 - - - nucleoporin 205
35. C14orf80 C14orf80 1921 0.942 - - - - - - 0.942 - - -
36. ENSGALG00000028164 ENSGALG00000028164 3325 0.942 - - - - - - 0.942 - - -
37. UBE3B ENSGALG00000013851 1672 0.941 - - - - - - 0.941 - - - ubiquitin protein ligase E3B [Source:NCBI gene;Acc:776286]
38. CEP290 ENSGALG00000011177 1559 0.94 - - - - - - 0.940 - - - centrosomal protein 290 [Source:HGNC Symbol;Acc:HGNC:29021]
39. MST1 ENSGALG00000002722 994 0.939 - - - - - - 0.939 - - - macrophage stimulating 1 (hepatocyte growth factor-like) [Source:NCBI gene;Acc:396135]
40. SDK2 ENSGALG00000031895 2682 0.939 - - - - - - 0.939 - - - sidekick cell adhesion molecule 2 [Source:NCBI gene;Acc:395215]
41. SPG11 ENSGALG00000008180 1890 0.938 - - - - - - 0.938 - - - SPG11, spatacsin vesicle trafficking associated [Source:HGNC Symbol;Acc:HGNC:11226]
42. FAM57A ENSGALG00000004820 1492 0.938 - - - - - - 0.938 - - - family with sequence similarity 57 member A [Source:HGNC Symbol;Acc:HGNC:29646]
43. ASB6 ENSGALG00000004378 1080 0.936 - - - - - - 0.936 - - - ankyrin repeat and SOCS box containing 6 [Source:NCBI gene;Acc:417194]
44. NCAPG2 ENSGALG00000006525 2319 0.934 - - - - - - 0.934 - - - non-SMC condensin II complex subunit G2 [Source:HGNC Symbol;Acc:HGNC:21904]
45. PKN3 532 0.933 - - - - - - 0.933 - - - protein kinase N3, transcript variant X2
46. MBNL2 ENSGALG00000016890 3162 0.933 - - - - - - 0.933 - - - muscleblind like splicing regulator 2 [Source:NCBI gene;Acc:418784]
47. MGLL ENSGALG00000032736 612 0.933 - - - - - - 0.933 - - - monoglyceride lipase [Source:NCBI gene;Acc:416024]
48. PLCE1 ENSGALG00000039528 151 0.932 - - - - - - 0.932 - - - phospholipase C epsilon 1
49. SLC25A21 ENSGALG00000010117 536 0.93 - - - - - - 0.930 - - - solute carrier family 25 member 21 [Source:HGNC Symbol;Acc:HGNC:14411]
50. TM9SF4 ENSGALG00000006568 567 0.929 - - - - - - 0.929 - - - transmembrane 9 superfamily member 4 [Source:HGNC Symbol;Acc:HGNC:30797]
51. USP54 ENSGALG00000005232 2749 0.929 - - - - - - 0.929 - - - ubiquitin specific peptidase 54 [Source:HGNC Symbol;Acc:HGNC:23513]
52. FAM193A ENSGALG00000015667 3075 0.928 - - - - - - 0.928 - - - family with sequence similarity 193 member A [Source:HGNC Symbol;Acc:HGNC:16822]
53. LFNG ENSGALG00000038515 5178 0.927 - - - - - - 0.927 - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395790]
54. SPAG9 ENSGALG00000034001 2314 0.927 - - - - - - 0.927 - - - sperm associated antigen 9 [Source:HGNC Symbol;Acc:HGNC:14524]
55. CCNL1 ENSGALG00000009699 1033 0.927 - - - - - - 0.927 - - - cyclin L1 [Source:HGNC Symbol;Acc:HGNC:20569]
56. NT5C2 ENSGALG00000008179 1760 0.927 - - - - - - 0.927 - - - 5'-nucleotidase, cytosolic II [Source:NCBI gene;Acc:423871]
57. XPO7 ENSGALG00000001838 1875 0.926 - - - - - - 0.926 - - - exportin 7 [Source:NCBI gene;Acc:426925]
58. SCAF4 ENSGALG00000033965 2027 0.926 - - - - - - 0.926 - - - SR-related CTD associated factor 4 [Source:NCBI gene;Acc:418492]
59. PGAP2 ENSGALG00000027762 2583 0.925 - - - - - - 0.925 - - - post-GPI attachment to proteins 2 [Source:HGNC Symbol;Acc:HGNC:17893]
60. ZNF142 ENSGALG00000011393 2078 0.923 - - - - - - 0.923 - - - zinc finger protein 142 [Source:HGNC Symbol;Acc:HGNC:12927]
61. SGSM3 ENSGALG00000012033 1839 0.921 - - - - - - 0.921 - - - small G protein signaling modulator 3 [Source:HGNC Symbol;Acc:HGNC:25228]
62. WIPI1 ENSGALG00000004215 3359 0.921 - - - - - - 0.921 - - - WD repeat domain, phosphoinositide interacting 1 [Source:HGNC Symbol;Acc:HGNC:25471]
63. PARD3B ENSGALG00000042645 2893 0.921 - - - - - - 0.921 - - - par-3 family cell polarity regulator beta [Source:HGNC Symbol;Acc:HGNC:14446]
64. ZFYVE19 ENSGALG00000008460 2750 0.92 - - - - - - 0.920 - - - zinc finger FYVE-type containing 19 [Source:NCBI gene;Acc:423204]
65. MBTPS1 ENSGALG00000003293 4843 0.918 - - - - - - 0.918 - - - membrane bound transcription factor peptidase, site 1 [Source:HGNC Symbol;Acc:HGNC:15456]
66. ATM ENSGALG00000017159 893 0.918 - - - - - - 0.918 - - - ATM serine/threonine kinase [Source:NCBI gene;Acc:395401]
67. DNAJC12 ENSGALG00000002769 1418 0.917 - - - - - - 0.917 - - - DnaJ heat shock protein family (Hsp40) member C12 [Source:NCBI gene;Acc:423647]
68. CCNE2 ENSGALG00000040794 1229 0.917 - - - - - - 0.917 - - - cyclin E2 [Source:NCBI gene;Acc:420231]
69. SUGP1 ENSGALG00000042132 2771 0.917 - - - - - - 0.917 - - - SURP and G-patch domain containing 1 [Source:NCBI gene;Acc:428349]
70. TUBA4A ENSGALG00000000433 1367 0.917 - - - - - - 0.917 - - - tubulin alpha 4a
71. NIN ENSGALG00000012361 2284 0.916 - - - - - - 0.916 - - - ninein [Source:HGNC Symbol;Acc:HGNC:14906]
72. BPHL ENSGALG00000029659 501 0.912 - - - - - - 0.912 - - - biphenyl hydrolase like [Source:HGNC Symbol;Acc:HGNC:1094]
73. NDUFV3 ENSGALG00000022813 4456 0.912 - - - - - - 0.912 - - - NADH:ubiquinone oxidoreductase subunit V3 [Source:NCBI gene;Acc:418541]
74. SRPK1 ENSGALG00000037546 1849 0.912 - - - - - - 0.912 - - - SRSF protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:11305]
75. TMEM135 2283 0.908 - - - - - - 0.908 - - - transmembrane protein 135, transcript variant X4
76. KANK4 ENSGALG00000010953 726 0.908 - - - - - - 0.908 - - - KN motif and ankyrin repeat domains 4 [Source:HGNC Symbol;Acc:HGNC:27263]
77. DIEXF ENSGALG00000009887 4782 0.906 - - - - - - 0.906 - - - digestive organ expansion factor homolog (zebrafish) [Source:NCBI gene;Acc:421384]
78. ROR1 ENSGALG00000011019 2155 0.904 - - - - - - 0.904 - - - receptor tyrosine kinase like orphan receptor 1 [Source:NCBI gene;Acc:395179]
79. ENSGALG00000002852 ENSGALG00000002852 2687 0.901 - - - - - - 0.901 - - -
80. ERMP1 ENSGALG00000000438 1136 0.901 - - - - - - 0.901 - - - endoplasmic reticulum metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:23703]
81. ALDH18A1 ENSGALG00000034655 3038 0.901 - - - - - - 0.901 - - - aldehyde dehydrogenase 18 family member A1, transcript variant X13
82. FTSJ2 FTSJ2 2951 0.899 - - - - - - 0.899 - - -
83. INTS7 ENSGALG00000009843 2395 0.899 - - - - - - 0.899 - - - integrator complex subunit 7 [Source:NCBI gene;Acc:421374]
84. TNFAIP8 ENSGALG00000027761 2383 0.898 - - - - - - 0.898 - - - TNF alpha induced protein 8 [Source:NCBI gene;Acc:427384]
85. MCEE ENSGALG00000003913 1527 0.898 - - - - - - 0.898 - - - methylmalonyl-CoA epimerase [Source:NCBI gene;Acc:415385]
86. RBL1 ENSGALG00000001332 2568 0.896 - - - - - - 0.896 - - - RB transcriptional corepressor like 1 [Source:HGNC Symbol;Acc:HGNC:9893]
87. OCRL ENSGALG00000003920 1812 0.895 - - - - - - 0.895 - - - OCRL, inositol polyphosphate-5-phosphatase [Source:HGNC Symbol;Acc:HGNC:8108]
88. MPST ENSGALG00000040840 2122 0.895 - - - - - - 0.895 - - - mercaptopyruvate sulfurtransferase [Source:NCBI gene;Acc:418048]
89. GPN3 ENSGALG00000003807 6320 0.893 - - - - - - 0.893 - - - GPN-loop GTPase 3 [Source:HGNC Symbol;Acc:HGNC:30186]
90. RPIA ENSGALG00000015960 2784 0.892 - - - - - - 0.892 - - - ribose 5-phosphate isomerase A [Source:NCBI gene;Acc:422931]
91. B4GALT3 ENSGALG00000022891 2825 0.891 - - - - - - 0.891 - - - beta-1,4-galactosyltransferase 3
92. JMJD7 ENSGALG00000026846 1320 0.889 - - - - - - 0.889 - - - jumonji domain containing 7 [Source:NCBI gene;Acc:423221]
93. NSMCE4A ENSGALG00000009504 1302 0.888 - - - - - - 0.888 - - - NSE4 homolog A, SMC5-SMC6 complex component
94. SUN1 ENSGALG00000003781 3442 0.888 - - - - - - 0.888 - - - Sad1 and UNC84 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18587]
95. NAT9 ENSGALG00000007723 2098 0.887 - - - - - - 0.887 - - - N-acetyltransferase 9 (putative), transcript variant X7
96. COPS8 ENSGALG00000033385 10166 0.882 - - - - - - 0.882 - - - COP9 signalosome subunit 8 [Source:NCBI gene;Acc:424020]
97. SRP72 ENSGALG00000011403 13666 0.882 - - - - - - 0.882 - - - signal recognition particle 72 [Source:NCBI gene;Acc:422626]
98. ECHDC3 ENSGALG00000006690 1299 0.881 - - - - - - 0.881 - - - enoyl-CoA hydratase domain containing 3 [Source:NCBI gene;Acc:419098]
99. WDR47 ENSGALG00000002129 2624 0.88 - - - - - - 0.880 - - - WD repeat domain 47 [Source:HGNC Symbol;Acc:HGNC:29141]
100. CDC42SE2 ENSGALG00000027258 4725 0.879 - - - - - - 0.879 - - - CDC42 small effector 2 [Source:NCBI gene;Acc:768825]

There are 255 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA