Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PTX3

Gene Name Gene ID Reads Annotation
PTX3 ENSGALG00000028284 2984 pentraxin 3 [Source:NCBI gene;Acc:548626]











Genes with expression patterns similar to PTX3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PTX3 ENSGALG00000028284 2984 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 pentraxin 3 [Source:NCBI gene;Acc:548626]
2. C26H6ORF89 C26H6ORF89 1826 1.836 - - - - 0.854 - - - - 0.982
3. CPT2 ENSGALG00000010681 3211 1.819 - - - - - - - 0.842 - 0.977 carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
4. MYOCD ENSGALG00000001021 351 1.813 - - - - - - - 0.855 - 0.958 myocardin [Source:NCBI gene;Acc:427790]
5. PCNP ENSGALG00000015330 15750 1.795 - - - - 0.861 - - - - 0.934 PEST proteolytic signal containing nuclear protein [Source:NCBI gene;Acc:418398]
6. CCDC88A ENSGALG00000043587 2208 1.792 - - - - 0.825 - - - - 0.967 coiled-coil domain containing 88A [Source:HGNC Symbol;Acc:HGNC:25523]
7. STIL ENSGALG00000010478 1398 1.764 - - - - 0.837 - - - - 0.927 STIL, centriolar assembly protein [Source:HGNC Symbol;Acc:HGNC:10879]
8. BRT-1 BRT-1 26083 1.746 - - - - - - - 0.826 - 0.920
9. FREM3 ENSGALG00000020561 1824 1.736 - - - - - - - - 0.769 0.967 FRAS1 related extracellular matrix 3
10. AGGF1 ENSGALG00000004311 3011 1.734 - - - - - - - 0.752 - 0.982 angiogenic factor with G-patch and FHA domains 1, transcript variant X1
11. ARPC1B ENSGALG00000032588 2407 1.702 - - - - - - 0.725 - - 0.977 actin related protein 2/3 complex subunit 1B [Source:NCBI gene;Acc:416490]
12. TXNDC11 ENSGALG00000003154 2224 1.698 - - - - - - - 0.732 - 0.966 thioredoxin domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28030]
13. CNTRL ENSGALG00000001513 1773 1.69 - - - - - - - - 0.707 0.983 centriolin [Source:NCBI gene;Acc:417121]
14. PLEKHG1 ENSGALG00000012395 2708 1.679 - - - - 0.724 - - - - 0.955 pleckstrin homology and RhoGEF domain containing G1 [Source:HGNC Symbol;Acc:HGNC:20884]
15. GTF3C1 ENSGALG00000007387 5788 1.674 - - - - 0.723 - - - - 0.951 general transcription factor IIIC subunit 1 [Source:HGNC Symbol;Acc:HGNC:4664]
16. RRAGC ENSGALG00000033079 4966 1.673 - - - - 0.720 - - - - 0.953 Ras related GTP binding C [Source:NCBI gene;Acc:419605]
17. TMEM68 ENSGALG00000031835 1691 1.669 - - - - 0.720 - - - - 0.949 transmembrane protein 68 [Source:NCBI gene;Acc:421124]
18. TANK ENSGALG00000011131 3382 1.668 - - - - - - - 0.750 - 0.918 TRAF family member associated NFKB activator [Source:NCBI gene;Acc:424190]
19. WRNIP1 ENSGALG00000012856 1954 1.664 - - - - 0.707 - - - - 0.957 Werner helicase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:20876]
20. SRF ENSGALG00000032029 6983 1.637 - - - - - - - 0.820 - 0.817 serum response factor [Source:NCBI gene;Acc:396103]
21. LIFR ENSGALG00000003733 4391 1.633 - - - - - - 0.750 0.883 - - leukemia inhibitory factor receptor alpha [Source:NCBI gene;Acc:395262]
22. TSPAN12 ENSGALG00000009029 2145 1.612 - - - - 0.776 - - 0.836 - - tetraspanin 12 [Source:NCBI gene;Acc:417763]
23. FNBP1L ENSGALG00000005850 9219 1.601 - - - - - - 0.704 - - 0.897 formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
24. CIB1 ENSGALG00000008302 13946 1.601 - - - - - - 0.747 - - 0.854 calcium and integrin binding 1 [Source:NCBI gene;Acc:770162]
25. EXOSC1 ENSGALG00000039917 5259 1.595 - - - - 0.776 - - - - 0.819 exosome component 1 [Source:HGNC Symbol;Acc:HGNC:17286]
26. AMACR ENSGALG00000003326 2657 1.572 - - - - 0.748 - 0.824 - - - alpha-methylacyl-CoA racemase [Source:NCBI gene;Acc:427429]
27. MMP15 ENSGALG00000038758 49988 1.565 - - - - - - 0.752 0.813 - - matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
28. SNX12 ENSGALG00000005659 9503 1.555 - - - - - - - 0.767 - 0.788 sorting nexin 12 [Source:NCBI gene;Acc:428704]
29. MYO5A ENSGALG00000031987 2469 1.551 - - - - - - - - 0.702 0.849 myosin VA [Source:NCBI gene;Acc:396237]
30. GNG12 ENSGALG00000026591 5817 1.546 - - - - 0.713 - - 0.833 - - G protein subunit gamma 12, transcript variant X21
31. RPA3 ENSGALG00000010700 6212 1.543 - - - - 0.790 - - - - 0.753 replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]
32. PLEKHH2 ENSGALG00000009947 6384 1.54 - - - - - - - 0.788 0.752 - pleckstrin homology, MyTH4 and FERM domain containing H2 [Source:HGNC Symbol;Acc:HGNC:30506]
33. PTPRK ENSGALG00000037423 3688 1.535 - - - - - - 0.745 0.790 - - protein tyrosine phosphatase, receptor type K [Source:HGNC Symbol;Acc:HGNC:9674]
34. LRIG3 ENSGALG00000009755 6655 1.52 - - - - - - 0.779 0.741 - - leucine rich repeats and immunoglobulin like domains 3 [Source:NCBI gene;Acc:417813]
35. UBN1 ENSGALG00000031416 2848 1.513 - - - - - - - 0.727 - 0.786 ubinuclein 1 [Source:NCBI gene;Acc:416398]
36. ARPC1A ENSGALG00000004693 11583 1.495 - - - - 0.747 - - - - 0.748 actin related protein 2/3 complex subunit 1A [Source:NCBI gene;Acc:770269]
37. UFD1L 12964 1.49 - - - - 0.740 - - - - 0.750 ubiquitin fusion degradation 1 like (yeast)
38. PKP2 ENSGALG00000012913 2547 1.488 - - - 0.709 - - 0.779 - - - plakophilin 2 [Source:HGNC Symbol;Acc:HGNC:9024]
39. TBX3 ENSGALG00000036043 2888 1.485 - - - - - - 0.721 - - 0.764 T-box 3 [Source:NCBI gene;Acc:374202]
40. SPATA2 ENSGALG00000008026 2040 1.426 - - - - 0.724 - - 0.702 - - spermatogenesis associated 2 [Source:NCBI gene;Acc:419355]
41. TGFBR3 ENSGALG00000006038 2951 1.422 - - - - - - 0.720 0.702 - - transforming growth factor beta receptor 3 [Source:NCBI gene;Acc:374251]
42. RBPMS ENSGALG00000010291 3663 1.412 - - - - - 0.709 0.703 - - - RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097]
43. ZNF6 ZNF6 138 0.993 - - - - - - - - - 0.993
44. 5S_2 5S_2 58 0.992 - - - - - - - - - 0.992
45. CXADR ENSGALG00000015701 96 0.992 - - - - - - - - - 0.992 coxsackie virus and adenovirus receptor, transcript variant X2
46. FAM190B FAM190B 165 0.992 - - - - - - - - - 0.992
47. IL10R2 IL10R2 72 0.992 - - - - - - - - - 0.992
48. SOX6 ENSGALG00000006074 102 0.992 - - - - - - - - - 0.992 Gallus gallus SRY-box 6 (SOX6), mRNA. [Source:RefSeq mRNA;Acc:NM_001318451]
49. CPNE2 ENSGALG00000001316 236 0.992 - - - - - - - - - 0.992 copine 2 [Source:NCBI gene;Acc:415646]
50. ARHGAP21 ENSGALG00000007721 3961 0.991 - - - - - - - - - 0.991 Rho GTPase activating protein 21 [Source:NCBI gene;Acc:420500]
51. CRYM ENSGALG00000002484 3558 0.991 - - - - - - - - - 0.991 crystallin mu [Source:HGNC Symbol;Acc:HGNC:2418]
52. FASTKD3 ENSGALG00000033521 1186 0.991 - - - - - - - - - 0.991 FAST kinase domains 3 [Source:HGNC Symbol;Acc:HGNC:28758]
53. CASKIN1 604 0.991 - - - - - - - - - 0.991 CASK interacting protein 1, transcript variant X4
54. ITSN2 ENSGALG00000016504 651 0.99 - - - - - - - - - 0.990 intersectin 2 [Source:HGNC Symbol;Acc:HGNC:6184]
55. APBA3 ENSGALG00000000740 1249 0.99 - - - - - - - - - 0.990 amyloid beta precursor protein binding family A member 3 [Source:HGNC Symbol;Acc:HGNC:580]
56. AURKA ENSGALG00000007768 793 0.989 - - - - - - - - - 0.989 aurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]
57. PROM1 ENSGALG00000014496 2494 0.988 - - - - - - - - - 0.988 prominin 1 [Source:NCBI gene;Acc:422825]
58. SSH1 ENSGALG00000004928 222 0.988 - - - - - - - - - 0.988 slingshot protein phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:30579]
59. SLC2A3 SLC2A3 527 0.987 - - - - - - - - - 0.987
60. PCLO 249 0.987 - - - - - - - - - 0.987 piccolo presynaptic cytomatrix protein
61. MTSS1 ENSGALG00000041969 1312 0.987 - - - - - - - - - 0.987 MTSS1, I-BAR domain containing [Source:NCBI gene;Acc:420336]
62. PM20D2 ENSGALG00000015779 1301 0.987 - - - - - - - - - 0.987 peptidase M20 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21408]
63. CDH1-A CDH1-A 343 0.986 - - - - - - - - - 0.986
64. BRD1 ENSGALG00000029379 6047 0.986 - - - - - - - - - 0.986 bromodomain containing 1 [Source:NCBI gene;Acc:417731]
65. ITGA9 ENSGALG00000029378 415 0.986 - - - - - - - - - 0.986 integrin subunit alpha 9 [Source:NCBI gene;Acc:420757]
66. WDSUB1 ENSGALG00000012574 2038 0.986 - - - - - - - - - 0.986 WD repeat, sterile alpha motif and U-box domain containing 1 [Source:NCBI gene;Acc:424331]
67. INTS10 ENSGALG00000010130 6320 0.986 - - - - - - - - - 0.986 integrator complex subunit 10 [Source:NCBI gene;Acc:422489]
68. GRK4 ENSGALG00000015645 1065 0.986 - - - - - - - - - 0.986 G protein-coupled receptor kinase 4 [Source:NCBI gene;Acc:422879]
69. TBC1D19 ENSGALG00000029673 1868 0.985 - - - - - - - - - 0.985 TBC1 domain family member 19 [Source:HGNC Symbol;Acc:HGNC:25624]
70. PREX2 ENSGALG00000042354 134 0.985 - - - - - - - - - 0.985 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2
71. HAUS8 ENSGALG00000003727 351 0.985 - - - - - - - - - 0.985 HAUS augmin like complex subunit 8 [Source:HGNC Symbol;Acc:HGNC:30532]
72. FSTL4 ENSGALG00000031487 529 0.985 - - - - - - - - - 0.985 follistatin like 4 [Source:NCBI gene;Acc:395163]
73. SLC39A13 ENSGALG00000008122 2003 0.985 - - - - - - - - - 0.985 solute carrier family 39 member 13 [Source:NCBI gene;Acc:423183]
74. FAM129A ENSGALG00000004812 269 0.985 - - - - - - - - - 0.985 family with sequence similarity 129 member A [Source:NCBI gene;Acc:424451]
75. TP53BP1 ENSGALG00000042201 708 0.984 - - - - - - - - - 0.984 tumor protein p53 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11999]
76. MGA 1911 0.984 - - - - - - - - - 0.984 MGA, MAX dimerization protein, transcript variant X15
77. ACADL ENSGALG00000002891 8058 0.984 - - - - - - - - - 0.984 acyl-CoA dehydrogenase long chain [Source:NCBI gene;Acc:424005]
78. SGSH ENSGALG00000007027 1115 0.984 - - - - - - - - - 0.984 N-sulfoglucosamine sulfohydrolase [Source:HGNC Symbol;Acc:HGNC:10818]
79. C14orf80 C14orf80 1921 0.983 - - - - - - - - - 0.983
80. MSI1 ENSGALG00000007227 2279 0.983 - - - - - - - - - 0.983 musashi RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:7330]
81. FRMD3 ENSGALG00000012577 999 0.983 - - - - - - - - - 0.983 FERM domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24125]
82. KLHL7 ENSGALG00000010938 528 0.982 - - - - - - - - - 0.982 kelch like family member 7 [Source:NCBI gene;Acc:420612]
83. PLA2G15 ENSGALG00000041787 762 0.982 - - - - - - - - - 0.982 phospholipase A2 group XV [Source:HGNC Symbol;Acc:HGNC:17163]
84. HYAL3 ENSGALG00000029000 712 0.982 - - - - - - - - - 0.982 hyaluronoglucosaminidase 3 [Source:HGNC Symbol;Acc:HGNC:5322]
85. C10orf118 C10orf118 762 0.982 - - - - - - - - - 0.982
86. ZFR ENSGALG00000003235 8466 0.982 - - - - - - - - - 0.982 zinc finger RNA binding protein, transcript variant X3
87. DIAPH3 ENSGALG00000016937 1069 0.981 - - - - - - - - - 0.981 diaphanous related formin 3 [Source:HGNC Symbol;Acc:HGNC:15480]
88. GORASP1 ENSGALG00000006033 4033 0.981 - - - - - - - - - 0.981 golgi reassembly stacking protein 1 [Source:NCBI gene;Acc:420426]
89. MRPL50 ENSGALG00000015543 11649 0.981 - - - - - - - - - 0.981 mitochondrial ribosomal protein L50 [Source:NCBI gene;Acc:427307]
90. WHSC1 1712 0.981 - - - - - - - - - 0.981 Wolf-Hirschhorn syndrome candidate 1, transcript variant X14
91. SPDL1 ENSGALG00000001942 4403 0.98 - - - - - - - - - 0.980 spindle apparatus coiled-coil protein 1 [Source:HGNC Symbol;Acc:HGNC:26010]
92. ESRRG ENSGALG00000009645 2783 0.98 - - - - - - - - - 0.980 estrogen related receptor gamma [Source:NCBI gene;Acc:421357]
93. NARS ENSGALG00000040506 9506 0.98 - - - - - - - - - 0.980 asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
94. CDKN2AIP ENSGALG00000010661 1218 0.979 - - - - - - - - - 0.979 CDKN2A interacting protein [Source:HGNC Symbol;Acc:HGNC:24325]
95. MPRIP ENSGALG00000004798 6700 0.979 - - - - - - - - - 0.979 myosin phosphatase Rho interacting protein [Source:HGNC Symbol;Acc:HGNC:30321]
96. CPNE1 ENSGALG00000040856 610 0.977 - - - - - - - - - 0.977 copine 1 [Source:NCBI gene;Acc:419134]
97. RTN4R ENSGALG00000007732 1515 0.977 - - - - - - - - - 0.977 reticulon 4 receptor
98. ENSGALG00000005389 ENSGALG00000005389 553 0.977 - - - - - - - - - 0.977
99. MYH1D ENSGALG00000027323 365 0.977 - - - - - - - - - 0.977 Gallus gallus myosin, heavy chain 1D, skeletal muscle (MYH1D), mRNA. [Source:RefSeq mRNA;Acc:NM_001319304]
100. ZNF106 ENSGALG00000009081 1520 0.976 - - - - - - - - - 0.976 zinc finger protein 106 [Source:HGNC Symbol;Acc:HGNC:12886]

There are 772 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA