Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PTBP1

Gene Name Gene ID Reads Annotation
PTBP1 ENSGALG00000001962 66983 polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:420098]











Genes with expression patterns similar to PTBP1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PTBP1 ENSGALG00000001962 66983 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 polypyrimidine tract binding protein 1 [Source:NCBI gene;Acc:420098]
2. PSMC2 ENSGALG00000008236 25980 0.948 - - - - - - 0.948 - - - proteasome 26S subunit, ATPase 2 [Source:NCBI gene;Acc:417716]
3. MAGOH 28688 0.943 - - - - - - 0.943 - - - mago homolog, exon junction complex core component
4. TP53BP2 ENSGALG00000042816 12368 0.934 - - - - - - 0.934 - - - tumor protein p53 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:12000]
5. MGST1 ENSGALG00000013098 17632 0.931 - - - - - - 0.931 - - - microsomal glutathione S-transferase 1 [Source:NCBI gene;Acc:418178]
6. ENSGALG00000007509 ENSGALG00000007509 18441 0.931 - - - - - - 0.931 - - -
7. COPS4 ENSGALG00000011130 21515 0.924 - - - - - - 0.924 - - - COP9 signalosome subunit 4 [Source:NCBI gene;Acc:422594]
8. MRPL19 ENSGALG00000016731 22670 0.923 - - - - - - 0.923 - - - mitochondrial ribosomal protein L19, transcript variant X1
9. PSMA6 ENSGALG00000010060 26517 0.922 - - - - - - 0.922 - - - proteasome subunit alpha 6 [Source:NCBI gene;Acc:423326]
10. AIRC AIRC 15851 0.919 - - - - - - 0.919 - - -
11. ADH5 ENSGALG00000012245 38217 0.918 - - - - - - 0.918 - - - alcohol dehydrogenase 5 (class III), chi polypeptide [Source:NCBI gene;Acc:422705]
12. ACAA2 ENSGALG00000031142 29220 0.912 - - - - - - 0.912 - - - acetyl-CoA acyltransferase 2 [Source:NCBI gene;Acc:426847]
13. GABPA ENSGALG00000015763 11567 0.906 - - - - - - 0.906 - - - GA binding protein transcription factor subunit alpha [Source:NCBI gene;Acc:418478]
14. MINOS1 ENSGALG00000004039 37740 0.906 - - - - - - 0.906 - - - mitochondrial inner membrane organizing system 1 [Source:NCBI gene;Acc:419474]
15. TCP1 ENSGALG00000011637 73216 0.902 - - - - - - 0.902 - - - t-complex 1 [Source:NCBI gene;Acc:421586]
16. UBR7 ENSGALG00000010842 16488 0.901 - - - - - - 0.901 - - - Gallus gallus ubiquitin protein ligase E3 component n-recognin 7 (putative) (UBR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001318461]
17. ATRX ENSGALG00000007843 34172 0.9 - - - - - - 0.900 - - - ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
18. NAA25 ENSGALG00000041821 12729 0.9 - - - - - - 0.900 - - - N(alpha)-acetyltransferase 25, NatB auxiliary subunit [Source:NCBI gene;Acc:416883]
19. gga-mir-3526 ENSGALG00000029121 41375 0.897 - - - - - - - 0.897 - - gga-mir-3526 [Source:miRBase;Acc:MI0015377]
20. MRPL44 ENSGALG00000003067 15256 0.897 - - - - - - 0.897 - - - mitochondrial ribosomal protein L44 [Source:NCBI gene;Acc:424795]
21. ID2 ENSGALG00000035016 22120 0.893 - - - - - - 0.893 - - - inhibitor of DNA binding 2, HLH protein [Source:NCBI gene;Acc:395852]
22. RCC2 ENSGALG00000031684 28067 0.892 - - - - - - 0.892 - - - regulator of chromosome condensation 2 [Source:HGNC Symbol;Acc:HGNC:30297]
23. FUNDC1 ENSGALG00000028187 10511 0.892 - - - - - - 0.892 - - - FUN14 domain containing 1 [Source:NCBI gene;Acc:418558]
24. COPE ENSGALG00000003153 19444 0.891 - - - - - - 0.891 - - - coatomer protein complex subunit epsilon [Source:NCBI gene;Acc:420117]
25. CREPT CREPT 17142 0.891 - - - - - - 0.891 - - -
26. PRMT3 ENSGALG00000003958 14160 0.891 - - - - - - 0.891 - - - protein arginine methyltransferase 3 [Source:NCBI gene;Acc:422975]
27. KIF20A ENSGALG00000035030 10249 0.886 - - - - - - 0.886 - - - kinesin family member 20A [Source:NCBI gene;Acc:416220]
28. MCM4 ENSGALG00000012915 13151 0.883 - - - - - - 0.883 - - - minichromosome maintenance complex component 4
29. TRAM1 ENSGALG00000041112 22876 0.883 - - - - - - 0.883 - - - translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
30. CALD1 ENSGALG00000033471 8950 0.882 - - - - - - - - 0.882 - caldesmon 1 [Source:NCBI gene;Acc:373965]
31. LARP1 ENSGALG00000040109 14808 0.881 - - - - - - 0.881 - - - La ribonucleoprotein domain family member 1 [Source:HGNC Symbol;Acc:HGNC:29531]
32. LAP3 ENSGALG00000006334 21076 0.878 - - - - - - 0.878 - - - leucine aminopeptidase 3 [Source:NCBI gene;Acc:425306]
33. VMP1 ENSGALG00000005160 12859 0.877 - - - - - - 0.877 - - - vacuole membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:29559]
34. ARL6IP5 ENSGALG00000038904 12956 0.877 - - - - - - 0.877 - - - ADP ribosylation factor like GTPase 6 interacting protein 5 [Source:NCBI gene;Acc:426074]
35. NARS ENSGALG00000040506 9506 0.877 - - - - - - 0.877 - - - asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
36. CLPTM1L ENSGALG00000013187 9733 0.877 - - - - - - 0.877 - - - CLPTM1 like [Source:NCBI gene;Acc:420973]
37. FAM96B 14435 0.875 - - - - - - 0.875 - - - family with sequence similarity 96 member B
38. TALDO1 ENSGALG00000037195 30673 0.874 - - - - - - 0.874 - - - transaldolase 1 [Source:NCBI gene;Acc:423019]
39. COX7A2L ENSGALG00000037996 13646 0.873 - - - - - - 0.873 - - - cytochrome c oxidase subunit 7A2 like [Source:NCBI gene;Acc:421392]
40. PEBP1 ENSGALG00000007403 77502 0.873 - - - - - - 0.873 - - - phosphatidylethanolamine binding protein 1 [Source:NCBI gene;Acc:416990]
41. PSMB3 ENSGALG00000001597 22588 0.873 - - - - - - 0.873 - - - proteasome subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:9540]
42. GCLM ENSGALG00000005782 15789 0.871 - - - - - - 0.871 - - - glutamate-cysteine ligase modifier subunit [Source:NCBI gene;Acc:424492]
43. NDUFB10 ENSGALG00000005465 41984 0.871 - - - - - - 0.871 - - - NADH:ubiquinone oxidoreductase subunit B10 [Source:HGNC Symbol;Acc:HGNC:7696]
44. TCF3 ENSGALG00000001093 15624 0.868 - - - - - - 0.868 - - - transcription factor 3 [Source:NCBI gene;Acc:395146]
45. STK4 ENSGALG00000004098 11366 0.867 - - - - - - 0.867 - - - serine/threonine kinase 4 [Source:NCBI gene;Acc:419187]
46. SFT2D1 ENSGALG00000020005 10855 0.864 - - - - - - 0.864 - - - SFT2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21102]
47. EIF3M ENSGALG00000012109 38661 0.864 - - - - - - 0.864 - - - eukaryotic translation initiation factor 3 subunit M [Source:NCBI gene;Acc:421602]
48. SNORA72 SNORA72 27695 0.862 - - - - - - 0.862 - - -
49. CNOT7 ENSGALG00000013649 23435 0.86 - - - - - - 0.860 - - - CCR4-NOT transcription complex subunit 7 [Source:NCBI gene;Acc:422733]
50. DNAJC15 ENSGALG00000016965 9163 0.86 - - - - - - 0.860 - - - DnaJ heat shock protein family (Hsp40) member C15 [Source:NCBI gene;Acc:418838]
51. WBP11 ENSGALG00000011745 11182 0.86 - - - - - - 0.860 - - - WW domain binding protein 11, transcript variant X1
52. TKT ENSGALG00000005309 19801 0.859 - - - - - - 0.859 - - - transketolase [Source:HGNC Symbol;Acc:HGNC:11834]
53. COL4A1 ENSGALG00000036798 12749 0.858 - - - - - - 0.858 - - - collagen type IV alpha 1 chain [Source:NCBI gene;Acc:395530]
54. PEPD ENSGALG00000004899 9785 0.858 - - - - - - 0.858 - - - peptidase D [Source:NCBI gene;Acc:415776]
55. POR ENSGALG00000002053 5223 0.855 - - - - - - 0.855 - - - cytochrome p450 oxidoreductase [Source:NCBI gene;Acc:417520]
56. SPTBN1 ENSGALG00000029512 18579 0.855 - - - - - - 0.855 - - - spectrin beta, non-erythrocytic 1 [Source:NCBI gene;Acc:421216]
57. HDGFL3 ENSGALG00000006036 13576 0.851 - - - - - - 0.851 - - - HDGF like 3 [Source:HGNC Symbol;Acc:HGNC:24937]
58. PRPS1 ENSGALG00000004908 27994 0.849 - - - - - - 0.849 - - - phosphoribosyl pyrophosphate synthetase 1
59. SF3A3 ENSGALG00000001540 9664 0.848 - - - - - - 0.848 - - - splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]
60. STX2 ENSGALG00000002536 10438 0.844 - - - - - - 0.844 - - - syntaxin 2 [Source:NCBI gene;Acc:378895]
61. FASTKD2 ENSGALG00000008529 7439 0.843 - - - - - - 0.843 - - - FAST kinase domains 2 [Source:HGNC Symbol;Acc:HGNC:29160]
62. DYNC1LI1 ENSGALG00000011491 11011 0.843 - - - - - - 0.843 - - - dynein cytoplasmic 1 light intermediate chain 1 [Source:NCBI gene;Acc:420668]
63. SOD2 ENSGALG00000011661 13178 0.842 - - - - - - 0.842 - - - superoxide dismutase 2 [Source:NCBI gene;Acc:374042]
64. GPX1 ENSGALG00000028204 62935 0.841 - - - - - - 0.841 - - - glutathione peroxidase 1 [Source:NCBI gene;Acc:100857115]
65. UTP3 ENSGALG00000011553 8814 0.84 - - - - - - 0.840 - - - UTP3, small subunit processome component homolog (S. cerevisiae)
66. PPIB ENSGALG00000002210 46778 0.839 - - - - - - 0.839 - - - peptidylprolyl isomerase B (cyclophilin B) [Source:NCBI gene;Acc:396447]
67. CLTA ENSGALG00000015326 26867 0.839 - - - - - - 0.839 - - - clathrin light chain A [Source:NCBI gene;Acc:427284]
68. NRD1 NRD1 10827 0.839 - - - - - - 0.839 - - -
69. ZMYND11 ENSGALG00000006599 5740 0.837 - - - - - - 0.837 - - - zinc finger MYND-type containing 11 [Source:HGNC Symbol;Acc:HGNC:16966]
70. SDF4 ENSGALG00000001872 6382 0.835 - - - - - - 0.835 - - - stromal cell derived factor 4 [Source:NCBI gene;Acc:419423]
71. SNRPF ENSGALG00000011409 23557 0.835 - - - - - - 0.835 - - - small nuclear ribonucleoprotein polypeptide F [Source:NCBI gene;Acc:417916]
72. NDUFS6 ENSGALG00000013191 15874 0.834 - - - - - - 0.834 - - - NADH:ubiquinone oxidoreductase subunit S6 [Source:HGNC Symbol;Acc:HGNC:7713]
73. TM9SF3 ENSGALG00000005534 15290 0.833 - - - - - - 0.833 - - - transmembrane 9 superfamily member 3
74. SIRT1 ENSGALG00000002761 9028 0.83 - - - - - - 0.830 - - - sirtuin 1 [Source:NCBI gene;Acc:423646]
75. HADH ENSGALG00000016124 18216 0.827 - - - - - - 0.827 - - - hydroxyacyl-CoA dehydrogenase [Source:NCBI gene;Acc:420290]
76. HN1 HN1 34386 0.825 - - - - - - 0.825 - - -
77. NDUFA9 ENSGALG00000017282 14358 0.823 - - - - - - 0.823 - - - NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
78. CENPF ENSGALG00000009690 10429 0.823 - - - - - - 0.823 - - - centromere protein F [Source:NCBI gene;Acc:395357]
79. ARNT2 ENSGALG00000006445 7050 0.82 - - - - - - 0.820 - - - aryl hydrocarbon receptor nuclear translocator 2 [Source:HGNC Symbol;Acc:HGNC:16876]
80. XPA ENSGALG00000028998 8621 0.82 - - - - - - 0.820 - - - XPA, DNA damage recognition and repair factor [Source:NCBI gene;Acc:395659]
81. TOP2B ENSGALG00000011300 25048 0.819 - - - - - - 0.819 - - - DNA topoisomerase 2-beta [Source:NCBI gene;Acc:395966]
82. BTAF1 ENSGALG00000030598 3556 0.818 - - - - - - 0.818 - - - B-TFIID TATA-box binding protein associated factor 1 [Source:HGNC Symbol;Acc:HGNC:17307]
83. NCOA4 ENSGALG00000002066 10544 0.818 - - - - - - 0.818 - - - nuclear receptor coactivator 4 [Source:NCBI gene;Acc:423615]
84. PMM2 ENSGALG00000007326 8260 0.817 - - - - - - 0.817 - - - phosphomannomutase 2 [Source:NCBI gene;Acc:427679]
85. RPL12 ENSGALG00000008806 229862 0.817 - - - - - - 0.817 - - - ribosomal protein L12 [Source:NCBI gene;Acc:417264]
86. SEMA4B ENSGALG00000008297 11202 0.815 - - - - - - 0.815 - - - semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
87. ARPC4 ENSGALG00000006691 33311 0.815 - - - - - - 0.815 - - - actin related protein 2/3 complex subunit 4 [Source:NCBI gene;Acc:416051]
88. BPTF ENSGALG00000038222 7521 0.815 - - - - - - 0.815 - - - bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
89. KIF15 ENSGALG00000036645 9946 0.814 - - - - - - 0.814 - - - kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]
90. PSMG3 ENSGALG00000004203 11240 0.812 - - - - - - 0.812 - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
91. ALDH4A1 ENSGALG00000042184 9432 0.811 - - - - - - 0.811 - - - aldehyde dehydrogenase 4 family member A1 [Source:NCBI gene;Acc:419467]
92. MRPS11 ENSGALG00000006777 16009 0.809 - - - - - - 0.809 - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
93. FBN2 ENSGALG00000014686 4538 0.807 - - - - - - - - 0.807 - fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
94. KARS ENSGALG00000000907 51247 0.807 - - - - - - 0.807 - - - lysyl-tRNA synthetase [Source:NCBI gene;Acc:415885]
95. UPF1 ENSGALG00000003220 9496 0.806 - - - - - - 0.806 - - - UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]
96. RBM12B ENSGALG00000035129 4314 0.804 - - - - - - 0.804 - - - RNA binding motif protein 12B [Source:NCBI gene;Acc:420223]
97. XRN1 ENSGALG00000002706 4014 0.804 - - - - - - 0.804 - - - 5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]
98. GFM1 ENSGALG00000009634 7213 0.803 - - - - - - 0.803 - - - G elongation factor mitochondrial 1 [Source:HGNC Symbol;Acc:HGNC:13780]
99. ARID4A ENSGALG00000012037 8554 0.803 - - - - - - 0.803 - - - AT-rich interaction domain 4A [Source:NCBI gene;Acc:423541]
100. ACO2 ENSGALG00000011950 30387 0.803 - - - - - - 0.803 - - - aconitase 2 [Source:NCBI gene;Acc:374009]

There are 169 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA