Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PSPC1

Gene Name Gene ID Reads Annotation
PSPC1 ENSGALG00000017142 13036 paraspeckle component 1 [Source:NCBI gene;Acc:418955]











Genes with expression patterns similar to PSPC1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PSPC1 ENSGALG00000017142 13036 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 paraspeckle component 1 [Source:NCBI gene;Acc:418955]
2. NAP1L1 ENSGALG00000010238 14506 1.899 - - - - 0.978 - - 0.921 - - nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
3. ENSGALG00000014852 ENSGALG00000014852 15288 1.832 - - - - 0.973 - - 0.859 - -
4. IGBP1 ENSGALG00000044628 9200 1.759 - - - - 0.972 - 0.787 - - - immunoglobulin (CD79A) binding protein 1, transcript variant X3
5. RANGAP1 ENSGALG00000011966 20170 1.749 - - - - 0.960 - 0.789 - - - Ran GTPase activating protein 1 [Source:NCBI gene;Acc:417997]
6. SSR2 ENSGALG00000000764 32190 1.748 - - - - 0.975 - - - - 0.773 signal sequence receptor subunit 2 [Source:NCBI gene;Acc:425656]
7. RPF2 ENSGALG00000037087 12788 1.725 - - - - - - 0.875 0.850 - - ribosome production factor 2 homolog [Source:HGNC Symbol;Acc:HGNC:20870]
8. CNTRL ENSGALG00000001513 1773 1.721 - - - - - - - 0.931 - 0.790 centriolin [Source:NCBI gene;Acc:417121]
9. SAR1B ENSGALG00000038753 6493 1.714 - - - - 0.970 - 0.744 - - - secretion associated Ras related GTPase 1B [Source:NCBI gene;Acc:416314]
10. NCAPG2 ENSGALG00000006525 2319 1.711 - - - - - - - 0.929 - 0.782 non-SMC condensin II complex subunit G2 [Source:HGNC Symbol;Acc:HGNC:21904]
11. SKP2 ENSGALG00000003547 14637 1.711 - - - - 0.946 - 0.765 - - - S-phase kinase associated protein 2 [Source:NCBI gene;Acc:427437]
12. CSNK1G1 ENSGALG00000030812 31618 1.71 - - - - 0.978 - 0.732 - - - casein kinase 1 gamma 1 [Source:NCBI gene;Acc:415328]
13. TMEM165 ENSGALG00000027886 5468 1.703 - - - - 0.982 - - - - 0.721 transmembrane protein 165 [Source:HGNC Symbol;Acc:HGNC:30760]
14. ATG5 ENSGALG00000015387 7752 1.701 - - - - 0.981 - 0.720 - - - autophagy related 5 [Source:NCBI gene;Acc:421784]
15. LY6E ENSGALG00000041621 16227 1.694 - - - - 0.931 - - - - 0.763 lymphocyte antigen 6 family member E [Source:NCBI gene;Acc:395550]
16. CBWD1 ENSGALG00000010147 2765 1.694 - - - - 0.974 - 0.720 - - - COBW domain containing 1 [Source:NCBI gene;Acc:427347]
17. POLR2B ENSGALG00000011387 4864 1.685 - - - - 0.968 - 0.717 - - - RNA polymerase II subunit B [Source:NCBI gene;Acc:422621]
18. PLAA ENSGALG00000001782 5459 1.684 - - - - 0.961 - 0.723 - - - phospholipase A2 activating protein [Source:HGNC Symbol;Acc:HGNC:9043]
19. PSMC2 ENSGALG00000008236 25980 1.674 - - - - 0.934 - - - - 0.740 proteasome 26S subunit, ATPase 2 [Source:NCBI gene;Acc:417716]
20. AP1B1 ENSGALG00000042213 4828 1.672 - - - - - - 0.764 0.908 - - adaptor related protein complex 1 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:554]
21. GTF2H3 ENSGALG00000023682 9914 1.664 - - - - - - 0.737 0.927 - - general transcription factor IIH subunit 3 [Source:NCBI gene;Acc:771837]
22. BMS1 ENSGALG00000002624 8339 1.662 - - - - - - 0.741 0.921 - - BMS1, ribosome biogenesis factor [Source:NCBI gene;Acc:423633]
23. METTL23 ENSGALG00000001790 7906 1.656 - - - - 0.945 - 0.711 - - - methyltransferase like 23 [Source:HGNC Symbol;Acc:HGNC:26988]
24. ERBB2IP ERBB2IP 5800 1.633 - - - - - - 0.709 0.924 - -
25. PSMC3 ENSGALG00000008108 22922 1.618 - - - - - - 0.804 0.814 - - proteasome 26S subunit, ATPase 3 [Source:NCBI gene;Acc:423182]
26. RAD23B ENSGALG00000015540 10828 1.612 - - - - - - 0.716 0.896 - - RAD23 homolog B, nucleotide excision repair protein [Source:HGNC Symbol;Acc:HGNC:9813]
27. DDX18 ENSGALG00000012147 12463 1.608 - - - - 0.796 - - 0.812 - - DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]
28. MBNL3 ENSGALG00000032045 10980 1.603 - - - - - - 0.766 0.837 - - muscleblind like splicing regulator 3 [Source:NCBI gene;Acc:422233]
29. UCHL3 ENSGALG00000016921 16208 1.578 - - - - - - 0.806 - - 0.772 ubiquitin C-terminal hydrolase L3 [Source:NCBI gene;Acc:395626]
30. ACTR2 ENSGALG00000008779 17812 1.57 - - - - - - 0.734 0.836 - - ARP2 actin related protein 2 homolog [Source:NCBI gene;Acc:396147]
31. SMC4 ENSGALG00000009553 15715 1.568 - - - - - - 0.797 - - 0.771 structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
32. QDPR ENSGALG00000030070 6953 1.553 - - - - - - 0.755 - - 0.798 quinoid dihydropteridine reductase [Source:NCBI gene;Acc:426335]
33. GXYLT1 ENSGALG00000009532 5682 1.552 - - - - - - 0.768 - - 0.784 glucoside xylosyltransferase 1 [Source:NCBI gene;Acc:417789]
34. Sep-05 Sep-05 5887 1.551 - - - - - - 0.721 0.830 - -
35. HOTAIRM1 HOTAIRM1 4335 1.548 - - - - - - 0.744 - - 0.804
36. WFDC1 ENSGALG00000005503 6152 1.544 - - - - - - 0.747 - - 0.797 WAP four-disulfide core domain 1 [Source:NCBI gene;Acc:395238]
37. ENSGALG00000002903 ENSGALG00000002903 18304 1.542 - - - - - - 0.756 0.786 - -
38. WDFY2 ENSGALG00000017019 2384 1.538 - - - - - - 0.774 0.764 - - WD repeat and FYVE domain containing 2 [Source:NCBI gene;Acc:770107]
39. NEO1 ENSGALG00000001774 10165 1.535 - - - - - - 0.766 - - 0.769 neogenin 1 [Source:HGNC Symbol;Acc:HGNC:7754]
40. MRPL50 ENSGALG00000015543 11649 1.534 - - - - - - 0.757 - - 0.777 mitochondrial ribosomal protein L50 [Source:NCBI gene;Acc:427307]
41. YIPF3 ENSGALG00000041037 6126 1.534 - - - - - - 0.812 - - 0.722 Yip1 domain family member 3 [Source:NCBI gene;Acc:421453]
42. POLR1B ENSGALG00000032273 3845 1.531 - - - - - - 0.799 - - 0.732 RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454]
43. MAN2A1 ENSGALG00000000255 4543 1.528 - - - - - - - 0.763 - 0.765 mannosidase alpha class 2A member 1 [Source:HGNC Symbol;Acc:HGNC:6824]
44. MRPS31 ENSGALG00000017033 9287 1.527 - - - - - - 0.749 - - 0.778 mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:HGNC:16632]
45. ARL13B ENSGALG00000015412 2968 1.525 - - - - - - 0.734 - - 0.791 ADP ribosylation factor like GTPase 13B [Source:HGNC Symbol;Acc:HGNC:25419]
46. GGA.31975 GGA.31975 8825 1.524 - - - - - - 0.755 - - 0.769
47. USP7 ENSGALG00000007307 2973 1.52 - - - - - - 0.765 - - 0.755 ubiquitin specific peptidase 7 [Source:NCBI gene;Acc:395126]
48. CMPK CMPK 9569 1.519 - - - - - - 0.707 - - 0.812
49. MTERFD1 MTERFD1 3640 1.514 - - - - - - 0.728 - - 0.786
50. RAD50 ENSGALG00000006794 4308 1.508 - - - - - - 0.719 - - 0.789 RAD50 double strand break repair protein, transcript variant X4
51. MB21D1 2460 1.505 - - - - - - 0.719 - - 0.786 Mab-21 domain containing 1
52. B3GALTL B3GALTL 4128 1.505 - - - - - - 0.717 - - 0.788
53. CHST6 ENSGALG00000000913, ENSGALG00000036545 7526 1.502 - - - - - - 0.736 0.766 - - carbohydrate sulfotransferase 6 [Source:NCBI gene;Acc:770257]
54. MED24 ENSGALG00000013506 5403 1.501 - - - - - - 0.725 - - 0.776 mediator complex subunit 24 [Source:NCBI gene;Acc:426134]
55. WASF1 ENSGALG00000015066 5628 1.5 - - - - - - 0.707 - - 0.793 WAS protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12732]
56. COX5A ENSGALG00000014121 55281 1.494 - - - - - - 0.729 - - 0.765 cytochrome c oxidase subunit 5A [Source:HGNC Symbol;Acc:HGNC:2267]
57. gga-mir-6587 ENSGALG00000026386 9441 1.494 - - - - - - 0.777 - - 0.717 gga-mir-6587 [Source:miRBase;Acc:MI0022407]
58. LOC426385 ENSGALG00000026301 2703 1.491 - - - - - - 0.751 - - 0.740 serine/threonine kinase 35-like, transcript variant X2
59. RAB11A ENSGALG00000007615 9154 1.479 - - - - 0.728 - 0.751 - - - RAB11A, member RAS oncogene family [Source:NCBI gene;Acc:415544]
60. PDE3B ENSGALG00000006035 3732 1.474 - - - - - - 0.732 - - 0.742 phosphodiesterase 3B [Source:NCBI gene;Acc:423064]
61. GTF2F2 ENSGALG00000016974 7524 1.465 - - - - - - 0.706 - - 0.759 general transcription factor IIF subunit 2 [Source:HGNC Symbol;Acc:HGNC:4653]
62. STRADA ENSGALG00000000550 6912 1.463 - - - - - - 0.713 - - 0.750 STE20-related kinase adaptor alpha [Source:NCBI gene;Acc:419957]
63. EPFIP1L ENSGALG00000007683 18050 1.462 - - 0.714 - - - 0.748 - - - re-mRNA 3'-end-processing factor FIP1-like, transcript variant X2
64. CPD ENSGALG00000004295 8199 1.449 - - - - - - 0.731 - - 0.718 carboxypeptidase D [Source:HGNC Symbol;Acc:HGNC:2301]
65. ENSGALG00000009044 ENSGALG00000009044 14492 1.448 - - - - - - 0.711 - - 0.737
66. ACAP2 ENSGALG00000007040 4182 1.439 - - - - - - 0.711 - - 0.728 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 [Source:NCBI gene;Acc:424895]
67. UBL3 ENSGALG00000017084 7417 1.435 - - - - - - 0.719 - - 0.716 ubiquitin like 3 [Source:NCBI gene;Acc:418921]
68. CTSO ENSGALG00000009373 4186 1.431 - - - - - - 0.706 - - 0.725 cathepsin O [Source:NCBI gene;Acc:422410]
69. LSM6 ENSGALG00000009985 18582 1.427 - - - - - - 0.704 - - 0.723 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:422466]
70. FERMT2 ENSGALG00000012425 5480 0.985 - - - - 0.985 - - - - - fermitin family member 2 [Source:HGNC Symbol;Acc:HGNC:15767]
71. ZBTB10 ENSGALG00000034376 3271 0.98 - - - - 0.980 - - - - - zinc finger and BTB domain containing 10 [Source:HGNC Symbol;Acc:HGNC:30953]
72. MRPL23 ENSGALG00000006561 13737 0.979 - - - - 0.979 - - - - - mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:374255]
73. ELL2 ENSGALG00000014678 1111 0.979 - - - - 0.979 - - - - - elongation factor for RNA polymerase II 2 [Source:HGNC Symbol;Acc:HGNC:17064]
74. KNOP1 ENSGALG00000002042 6251 0.978 - - - - 0.978 - - - - - lysine-rich nucleolar protein 1, transcript variant X1
75. ENSGALG00000011687 ENSGALG00000011687 4553 0.978 - - - - 0.978 - - - - -
76. COMMD8 ENSGALG00000026279 13509 0.978 - - - - 0.978 - - - - - COMM domain containing 8 [Source:NCBI gene;Acc:422769]
77. COIL ENSGALG00000003158 7806 0.978 - - - - 0.978 - - - - - coilin [Source:HGNC Symbol;Acc:HGNC:2184]
78. EAPP ENSGALG00000010007 5080 0.978 - - - - 0.978 - - - - - E2F associated phosphoprotein [Source:NCBI gene;Acc:423319]
79. TLCD1 ENSGALG00000003973 17569 0.978 - - - - 0.978 - - - - - TLC domain containing 1 [Source:NCBI gene;Acc:417575]
80. FH ENSGALG00000013165 13669 0.978 - - - - 0.978 - - - - - fumarate hydratase [Source:NCBI gene;Acc:420969]
81. IGF1R ENSGALG00000040651 772 0.978 - - - - 0.978 - - - - - insulin like growth factor 1 receptor [Source:NCBI gene;Acc:395889]
82. TCP11L1 ENSGALG00000011688 2427 0.978 - - - - 0.978 - - - - - t-complex 11 like 1 [Source:NCBI gene;Acc:421594]
83. SSPN ENSGALG00000014042 638 0.978 - - - - 0.978 - - - - - sarcospan [Source:HGNC Symbol;Acc:HGNC:11322]
84. STK3 ENSGALG00000032850 6339 0.977 - - - - 0.977 - - - - - serine/threonine kinase 3 [Source:NCBI gene;Acc:425375]
85. CTSZ ENSGALG00000007462 630 0.977 - - - - 0.977 - - - - - cathepsin Z [Source:HGNC Symbol;Acc:HGNC:2547]
86. XPO7 ENSGALG00000001838 1875 0.977 - - - - 0.977 - - - - - exportin 7 [Source:NCBI gene;Acc:426925]
87. DNAJC12 ENSGALG00000002769 1418 0.977 - - - - 0.977 - - - - - DnaJ heat shock protein family (Hsp40) member C12 [Source:NCBI gene;Acc:423647]
88. REST 2394 0.977 - - - - 0.977 - - - - - RE1 silencing transcription factor
89. TRAPPC12 ENSGALG00000016387 2593 0.977 - - - - 0.977 - - - - - trafficking protein particle complex 12 [Source:HGNC Symbol;Acc:HGNC:24284]
90. CZH9ORF41 CZH9ORF41 3492 0.976 - - - - 0.976 - - - - -
91. WDR82 ENSGALG00000025904 4783 0.976 - - - - 0.976 - - - - - WD repeat domain 82 [Source:NCBI gene;Acc:415942]
92. BAG4 ENSGALG00000003254 5751 0.975 - - - - 0.975 - - - - - BCL2 associated athanogene 4 [Source:HGNC Symbol;Acc:HGNC:940]
93. MRPS25 ENSGALG00000008506 12131 0.975 - - - - 0.975 - - - - - mitochondrial ribosomal protein S25 [Source:NCBI gene;Acc:416129]
94. DDX55 ENSGALG00000003298 2315 0.975 - - - - 0.975 - - - - - DEAD-box helicase 55 [Source:NCBI gene;Acc:416820]
95. SIRT1 ENSGALG00000002761 9028 0.975 - - - - 0.975 - - - - - sirtuin 1 [Source:NCBI gene;Acc:423646]
96. REEP5 ENSGALG00000023157 6282 0.975 - - - - 0.975 - - - - - receptor accessory protein 5 [Source:NCBI gene;Acc:770021]
97. TLK2 ENSGALG00000000410 4690 0.975 - - - - 0.975 - - - - - tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
98. RABEP1 ENSGALG00000001737 2650 0.973 - - - - 0.973 - - - - - rabaptin, RAB GTPase binding effector protein 1 [Source:NCBI gene;Acc:395930]
99. LATS2 4776 0.973 - - - - 0.973 - - - - - large tumor suppressor kinase 2
100. PUM1 ENSGALG00000042598 9392 0.973 - - - - 0.973 - - - - - pumilio RNA binding family member 1 [Source:NCBI gene;Acc:419554]

There are 981 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA