Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PRPF40A

Gene Name Gene ID Reads Annotation
PRPF40A ENSGALG00000012526 7724 pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]











Genes with expression patterns similar to PRPF40A

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PRPF40A ENSGALG00000012526 7724 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
2. TCTN2 ENSGALG00000023683 3596 1.673 - - 0.837 - - - - 0.836 - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
3. SEC22B ENSGALG00000039704 16080 1.658 - - 0.834 - - - 0.824 - - - SEC22 homolog B, vesicle trafficking protein [Source:NCBI gene;Acc:424377]
4. TAF5 ENSGALG00000008241 5227 1.646 - - 0.790 - - - - 0.856 - - TATA-box binding protein associated factor 5 [Source:NCBI gene;Acc:423872]
5. VPS13D ENSGALG00000034777 2350 1.643 - - 0.858 - - - - 0.785 - - vacuolar protein sorting 13 homolog D [Source:HGNC Symbol;Acc:HGNC:23595]
6. RNF185 ENSGALG00000006960 5428 1.624 - - - - - - 0.784 0.840 - - ring finger protein 185 [Source:NCBI gene;Acc:416965]
7. AIP ENSGALG00000040247 4166 1.621 - - - - - - 0.745 0.876 - - aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
8. GTPBP4 ENSGALG00000006703 16183 1.62 - - - - - - 0.780 0.840 - - GTP binding protein 4 [Source:NCBI gene;Acc:420458]
9. RNASEH1 ENSGALG00000016389 2694 1.612 - - - - - - 0.804 0.808 - - ribonuclease H1 [Source:NCBI gene;Acc:395848]
10. ATP6V0A2 ENSGALG00000003194 4824 1.609 - - 0.794 - - - - 0.815 - - ATPase H+ transporting V0 subunit a2 [Source:NCBI gene;Acc:395473]
11. SQLE ENSGALG00000036915 4172 1.602 - - 0.785 - - - 0.817 - - - squalene epoxidase [Source:NCBI gene;Acc:420335]
12. URM1 ENSGALG00000004971 17880 1.601 - - 0.744 - - - 0.857 - - - ubiquitin related modifier 1 [Source:NCBI gene;Acc:417221]
13. CPT2 ENSGALG00000010681 3211 1.597 - - 0.750 - - - - 0.847 - - carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
14. RCAN3 ENSGALG00000004282 7778 1.591 - - - - - - 0.753 0.838 - - RCAN family member 3 [Source:NCBI gene;Acc:419698]
15. DPYSL3 ENSGALG00000007582 7743 1.586 - - - - - - 0.863 0.723 - - dihydropyrimidinase like 3 [Source:NCBI gene;Acc:395154]
16. UBN1 ENSGALG00000031416 2848 1.582 - - 0.807 - - - - 0.775 - - ubinuclein 1 [Source:NCBI gene;Acc:416398]
17. HNRNPLL ENSGALG00000008504 14719 1.574 - - 0.761 - - - 0.813 - - - heterogeneous nuclear ribonucleoprotein L like [Source:NCBI gene;Acc:416702]
18. SURF6 ENSGALG00000038413 11178 1.57 - - 0.802 - - - 0.768 - - - surfeit 6 [Source:NCBI gene;Acc:417160]
19. SELM SELM 6366 1.564 - - 0.818 - - - 0.746 - - -
20. ARID2 ENSGALG00000033074 3461 1.558 - - 0.795 - - - - 0.763 - - AT-rich interaction domain 2 [Source:HGNC Symbol;Acc:HGNC:18037]
21. NAP1L1 ENSGALG00000010238 14506 1.557 0.714 - - - - - 0.843 - - - nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
22. SHROOM2 ENSGALG00000030802 4517 1.536 - - 0.758 - - - 0.778 - - - shroom family member 2 [Source:HGNC Symbol;Acc:HGNC:630]
23. PARN ENSGALG00000003091 6363 1.534 - - - - - - 0.816 0.718 - - poly(A)-specific ribonuclease [Source:NCBI gene;Acc:416423]
24. PMPCB ENSGALG00000008280 6357 1.53 - - 0.772 - - - 0.758 - - - peptidase, mitochondrial processing beta subunit [Source:NCBI gene;Acc:417718]
25. RNF20 ENSGALG00000015548 7199 1.528 - - 0.817 - - - 0.711 - - - ring finger protein 20 [Source:NCBI gene;Acc:427310]
26. SBNO1 ENSGALG00000003392 6731 1.527 - - 0.810 - - - 0.717 - - - strawberry notch homolog 1 [Source:NCBI gene;Acc:427694]
27. CCNK ENSGALG00000011138 6416 1.525 - - - - - - 0.821 0.704 - - cyclin K [Source:NCBI gene;Acc:423446]
28. HYAL1 ENSGALG00000000785 1778 1.522 - - 0.801 - - - - 0.721 - - hyaluronoglucosaminidase 1, transcript variant X3
29. AGGF1 ENSGALG00000004311 3011 1.521 - - 0.765 - - - - 0.756 - - angiogenic factor with G-patch and FHA domains 1, transcript variant X1
30. ZNF451 ENSGALG00000016282 3380 1.518 - - 0.780 - - - 0.738 - - - zinc finger protein 451 [Source:HGNC Symbol;Acc:HGNC:21091]
31. TUBA4A ENSGALG00000000433 1367 1.511 - - 0.802 - - - 0.709 - - - tubulin alpha 4a
32. MTDH ENSGALG00000034050 9525 1.507 0.724 - - - - - 0.783 - - - metadherin [Source:HGNC Symbol;Acc:HGNC:29608]
33. CAMSAP1 ENSGALG00000001692 2617 1.505 - - 0.795 - - - - 0.710 - - calmodulin regulated spectrin associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
34. NDRG3 ENSGALG00000001492 5919 1.503 - - - - - - 0.724 0.779 - - NDRG family member 3 [Source:HGNC Symbol;Acc:HGNC:14462]
35. THOC2 ENSGALG00000008507 9501 1.501 0.772 - 0.729 - - - - - - - THO complex 2 [Source:HGNC Symbol;Acc:HGNC:19073]
36. SENP6 ENSGALG00000015901 8013 1.501 - - 0.764 - - - - 0.737 - - SUMO specific peptidase 6 [Source:HGNC Symbol;Acc:HGNC:20944]
37. NT5C3B ENSGALG00000003651 5190 1.5 - - 0.702 - - - - 0.798 - - 5'-nucleotidase, cytosolic IIIB [Source:NCBI gene;Acc:420034]
38. PDHA1 ENSGALG00000016430 7070 1.482 - - 0.701 - - - 0.781 - - - pyruvate dehydrogenase E1 alpha 1 subunit [Source:NCBI gene;Acc:418610]
39. SPG11 ENSGALG00000008180 1890 1.478 - - 0.755 - - - 0.723 - - - SPG11, spatacsin vesicle trafficking associated [Source:HGNC Symbol;Acc:HGNC:11226]
40. PKN3 532 1.457 - - - - - - 0.704 0.753 - - protein kinase N3, transcript variant X2
41. ITSN1 ENSGALG00000036677 5727 1.452 0.714 - - - - - 0.738 - - - intersectin 1 [Source:HGNC Symbol;Acc:HGNC:6183]
42. CAP1 ENSGALG00000036294 18598 1.446 - - - - - - 0.711 0.735 - - cyclase associated actin cytoskeleton regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:20040]
43. ZC3H11A ENSGALG00000000541 2712 0.918 - - 0.918 - - - - - - - zinc finger CCCH-type containing 11A [Source:NCBI gene;Acc:421172]
44. VPS29 ENSGALG00000004529 22509 0.912 - - - - - - 0.912 - - - VPS29, retromer complex component [Source:NCBI gene;Acc:416867]
45. INTS6 ENSGALG00000017018 3083 0.896 - - - - - - 0.896 - - - integrator complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14879]
46. CDC5L ENSGALG00000016704 22893 0.893 - - 0.893 - - - - - - - cell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]
47. KRIT1 ENSGALG00000042651 4486 0.893 - - - - - - 0.893 - - - KRIT1, ankyrin repeat containing [Source:NCBI gene;Acc:420549]
48. UCK2 ENSGALG00000003510 2512 0.889 - - - - - - 0.889 - - - uridine-cytidine kinase 2 [Source:NCBI gene;Acc:424406]
49. STOML2 STOML2 15566 0.886 - - - - - - - 0.886 - -
50. RALGDS ENSGALG00000003412 4478 0.885 - - 0.885 - - - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
51. TOP2A ENSGALG00000003922 7726 0.88 - - 0.880 - - - - - - - topoisomerase (DNA) II alpha [Source:NCBI gene;Acc:395570]
52. LIMS1 ENSGALG00000029970 7244 0.879 - - - - - - - 0.879 - - LIM zinc finger domain containing 1 [Source:NCBI gene;Acc:414880]
53. IBTK ENSGALG00000015864 3154 0.877 - - - - - - - 0.877 - - inhibitor of Bruton tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:17853]
54. CCNA2 ENSGALG00000011881 2574 0.876 - - 0.876 - - - - - - - cyclin A2 [Source:NCBI gene;Acc:396172]
55. SEPHS1 ENSGALG00000014575 10701 0.876 - - 0.876 - - - - - - - selenophosphate synthetase 1 [Source:NCBI gene;Acc:426612]
56. TOP3B ENSGALG00000030051 5953 0.873 - - - - - - 0.873 - - - DNA topoisomerase III beta [Source:NCBI gene;Acc:416771]
57. STRBP ENSGALG00000029927 3516 0.871 - - 0.871 - - - - - - - spermatid perinuclear RNA binding protein [Source:NCBI gene;Acc:417105]
58. SNN ENSGALG00000028876 1687 0.871 - - 0.871 - - - - - - - stannin [Source:NCBI gene;Acc:416429]
59. ATP10D ENSGALG00000014192 94 0.869 - - 0.869 - - - - - - - ATPase phospholipid transporting 10D (putative) [Source:HGNC Symbol;Acc:HGNC:13549]
60. DBNDD2 ENSGALG00000003921 8301 0.868 - - - - - - 0.868 - - - dysbindin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15881]
61. PECR ENSGALG00000011497 1714 0.868 - - - - - - - 0.868 - - peroxisomal trans-2-enoyl-CoA reductase [Source:NCBI gene;Acc:424224]
62. EIF2D ENSGALG00000000856 8348 0.866 - - - - - - 0.866 - - - eukaryotic translation initiation factor 2D [Source:NCBI gene;Acc:419845]
63. QSER1 ENSGALG00000012030 4490 0.866 - - 0.866 - - - - - - - glutamine and serine rich 1 [Source:NCBI gene;Acc:421599]
64. SPCS2 ENSGALG00000019036 9496 0.865 - - - - - - 0.865 - - - signal peptidase complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:28962]
65. FLCN ENSGALG00000004816 4101 0.864 - - - - - - 0.864 - - - folliculin, transcript variant X1
66. PLDN PLDN 1803 0.863 - - - - - - - 0.863 - -
67. MTHFSD ENSGALG00000033322 824 0.863 - - 0.863 - - - - - - - methenyltetrahydrofolate synthetase domain containing [Source:HGNC Symbol;Acc:HGNC:25778]
68. RNF10 ENSGALG00000036417 8027 0.862 - - - - - - 0.862 - - - ring finger protein 10 [Source:HGNC Symbol;Acc:HGNC:10055]
69. TRAF3IP1 ENSGALG00000004236 7094 0.862 - - 0.862 - - - - - - - TRAF3 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:17861]
70. ATF7IP ENSGALG00000011814 1571 0.86 - - 0.860 - - - - - - - activating transcription factor 7 interacting protein [Source:NCBI gene;Acc:417966]
71. WHSC1 1712 0.86 - - 0.860 - - - - - - - Wolf-Hirschhorn syndrome candidate 1, transcript variant X14
72. MBSP MBSP 5634 0.857 - - 0.857 - - - - - - -
73. SOBP ENSGALG00000043047 147 0.857 - - 0.857 - - - - - - - sine oculis binding protein homolog [Source:NCBI gene;Acc:421775]
74. CLMP ENSGALG00000006507 8079 0.857 - - - - - - - 0.857 - - CXADR like membrane protein [Source:HGNC Symbol;Acc:HGNC:24039]
75. ACSS2 ENSGALG00000003362 3023 0.856 - - - - - - - 0.856 - - acyl-CoA synthetase short chain family member 2 [Source:HGNC Symbol;Acc:HGNC:15814]
76. CHCHD3 ENSGALG00000006489 18592 0.855 - - - - - - 0.855 - - - coiled-coil-helix-coiled-coil-helix domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21906]
77. HSD17B7 ENSGALG00000037852 4750 0.855 - - - - - - - 0.855 - - hydroxysteroid 17-beta dehydrogenase 7 [Source:NCBI gene;Acc:424367]
78. ABHD17A ENSGALG00000041163 5578 0.854 - - - - - - 0.854 - - - abhydrolase domain containing 17A [Source:HGNC Symbol;Acc:HGNC:28756]
79. UPF1 ENSGALG00000003220 9496 0.854 - - - - - - - 0.854 - - UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]
80. TFAP2C ENSGALG00000007690 768 0.854 - - 0.854 - - - - - - - transcription factor AP-2 gamma [Source:HGNC Symbol;Acc:HGNC:11744]
81. PRMT7 ENSGALG00000038865 2666 0.854 - - 0.854 - - - - - - - protein arginine methyltransferase 7 [Source:NCBI gene;Acc:415620]
82. USB1 ENSGALG00000035604 4003 0.853 - - - - - - 0.853 - - - U6 snRNA biogenesis phosphodiesterase 1 [Source:HGNC Symbol;Acc:HGNC:25792]
83. CDCA7L ENSGALG00000035978 2112 0.852 - - 0.852 - - - - - - - cell division cycle associated 7 like [Source:NCBI gene;Acc:420608]
84. DDX6 ENSGALG00000033064 2193 0.852 - - 0.852 - - - - - - - DEAD-box helicase 6 [Source:NCBI gene;Acc:419783]
85. TUBGCP3 ENSGALG00000016836 332 0.852 - - 0.852 - - - - - - - tubulin gamma complex associated protein 3 [Source:HGNC Symbol;Acc:HGNC:18598]
86. ENSGALG00000007574 ENSGALG00000007574 7695 0.851 - - - - - - 0.851 - - -
87. IFT57 ENSGALG00000015356 5540 0.851 - - 0.851 - - - - - - - intraflagellar transport 57 [Source:HGNC Symbol;Acc:HGNC:17367]
88. DNAJC24 ENSGALG00000012130 1882 0.85 - - 0.850 - - - - - - - DnaJ heat shock protein family (Hsp40) member C24 [Source:NCBI gene;Acc:421603]
89. PCDH17 ENSGALG00000016941 1006 0.85 - - 0.850 - - - - - - - protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
90. DCP1B 1306 0.849 - - 0.849 - - - - - - - decapping mRNA 1B
91. ENSGALG00000009863 ENSGALG00000009863 7375 0.849 - - 0.849 - - - - - - -
92. UHRF2 ENSGALG00000015052 1268 0.849 - - 0.849 - - - - - - - ubiquitin like with PHD and ring finger domains 2 [Source:HGNC Symbol;Acc:HGNC:12557]
93. SLK ENSGALG00000008318 2220 0.849 - - 0.849 - - - - - - - STE20 like kinase [Source:HGNC Symbol;Acc:HGNC:11088]
94. CANX ENSGALG00000032148 11297 0.849 - - - - - - 0.849 - - - calnexin [Source:NCBI gene;Acc:416288]
95. CUX1_1 ENSGALG00000021636 3705 0.849 - - - - - - - 0.849 - - cut like homeobox 1 [Source:NCBI gene;Acc:101749861]
96. APTX ENSGALG00000001954 692 0.848 - - 0.848 - - - - - - - aprataxin [Source:NCBI gene;Acc:395173]
97. CRTAP ENSGALG00000034163 6453 0.848 - - - - - - - 0.848 - - cartilage associated protein [Source:NCBI gene;Acc:395992]
98. FGFR1 ENSGALG00000039786 4480 0.848 - - - - - - - 0.848 - - fibroblast growth factor receptor 1 [Source:NCBI gene;Acc:396516]
99. ARRDC4 ENSGALG00000007012 1039 0.848 - - 0.848 - - - - - - - arrestin domain containing 4 [Source:HGNC Symbol;Acc:HGNC:28087]
100. IK ENSGALG00000037172 12100 0.847 - - - - - - 0.847 - - - IK cytokine, down-regulator of HLA II [Source:NCBI gene;Acc:416133]

There are 757 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA