Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PRPF4

Gene Name Gene ID Reads Annotation
PRPF4 ENSGALG00000008857 4001 pre-mRNA processing factor 4 [Source:HGNC Symbol;Acc:HGNC:17349]











Genes with expression patterns similar to PRPF4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PRPF4 ENSGALG00000008857 4001 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 pre-mRNA processing factor 4 [Source:HGNC Symbol;Acc:HGNC:17349]
2. POLDIP2 ENSGALG00000003211 11664 1.542 - - - - - - 0.732 0.810 - - DNA polymerase delta interacting protein 2 [Source:NCBI gene;Acc:417565]
3. NPM3 ENSGALG00000032329 21138 1.455 - - - - - - 0.755 0.700 - - nucleophosmin/nucleoplasmin 3 [Source:HGNC Symbol;Acc:HGNC:7931]
4. ATP2B1 ENSGALG00000030550 15123 0.91 - - - - - - - 0.910 - - ATPase plasma membrane Ca2+ transporting 1 [Source:NCBI gene;Acc:374244]
5. LTBP3 LTBP3 13316 0.843 - - - - - - - 0.843 - -
6. LGR4 ENSGALG00000040834 5529 0.843 - - - - - - - 0.843 - - leucine rich repeat containing G protein-coupled receptor 4 [Source:HGNC Symbol;Acc:HGNC:13299]
7. ACOT7 ENSGALG00000000652 7976 0.83 - - - - - - - 0.830 - - acyl-CoA thioesterase 7 [Source:HGNC Symbol;Acc:HGNC:24157]
8. CAPN9 158 0.826 - - - - - - - 0.826 - - calpain 9
9. WNK2 ENSGALG00000038850 4712 0.826 - - - - - - - 0.826 - - WNK lysine deficient protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14542]
10. TSC22D2 ENSGALG00000027591 6594 0.826 - - - - - - 0.826 - - - TSC22 domain family member 2 [Source:HGNC Symbol;Acc:HGNC:29095]
11. ENSGALG00000001591 ENSGALG00000001591 784 0.826 - - - - - - - 0.826 - -
12. FPGT ENSGALG00000026958 788 0.826 - - - - - - - 0.826 - - fucose-1-phosphate guanylyltransferase [Source:NCBI gene;Acc:100533998]
13. NKX-6.2 NKX-6.2 1370 0.825 - - - - - - - 0.825 - -
14. YTHDF3 ENSGALG00000039774 170 0.825 - - - - - - - 0.825 - - YTH N6-methyladenosine RNA binding protein 3 [Source:NCBI gene;Acc:421145]
15. VASH1 ENSGALG00000043036 1235 0.825 - - - - - - - 0.825 - - vasohibin 1 [Source:HGNC Symbol;Acc:HGNC:19964]
16. TOR1B TOR1B 197 0.825 - - - - - - - 0.825 - -
17. NCS1 ENSGALG00000012710 1104 0.825 - - - - - - - 0.825 - - neuronal calcium sensor 1 [Source:NCBI gene;Acc:396336]
18. SLC26A8 ENSGALG00000040498 253 0.825 - - - - - - - 0.825 - - solute carrier family 26 member 8 [Source:HGNC Symbol;Acc:HGNC:14468]
19. LOC420160 ENSGALG00000004252 188 0.824 - - - - - - - 0.824 - - cathepsin L1-like, transcript variant X3
20. RASGEF1B 2014 0.824 - - - - - - - 0.824 - - RasGEF domain family member 1B, transcript variant X8
21. CAPRIN2 1473 0.824 - - - - - - - 0.824 - - caprin family member 2, transcript variant X7
22. FTSJ2 FTSJ2 2951 0.824 - - - - - - - 0.824 - -
23. SLX4 ENSGALG00000031841 1208 0.824 - - - - - - - 0.824 - - SLX4 structure-specific endonuclease subunit [Source:HGNC Symbol;Acc:HGNC:23845]
24. KPNA4 ENSGALG00000009549 3674 0.824 - - - - - - - 0.824 - - karyopherin subunit alpha 4 [Source:NCBI gene;Acc:425012]
25. SETD2 ENSGALG00000042051 2981 0.824 - - - - - - - 0.824 - - SET domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18420]
26. LIPA ENSGALG00000006378 4414 0.824 - - - - - - - 0.824 - - lipase A, lysosomal acid type [Source:HGNC Symbol;Acc:HGNC:6617]
27. NR3C2 ENSGALG00000010035 603 0.823 - - - - - - - 0.823 - - nuclear receptor subfamily 3 group C member 2 [Source:NCBI gene;Acc:374131]
28. TBCE ENSGALG00000013950 3076 0.823 - - - - - - - 0.823 - - tubulin folding cofactor E
29. SEMA3F ENSGALG00000029621 2079 0.823 - - - - - - - 0.823 - - semaphorin 3F [Source:NCBI gene;Acc:374109]
30. HIP1R ENSGALG00000031511 1981 0.822 - - - - - - - 0.822 - - huntingtin interacting protein 1 related [Source:NCBI gene;Acc:416836]
31. GNB1L ENSGALG00000001925 1981 0.821 - - - - - - - 0.821 - - G protein subunit beta 1 like [Source:NCBI gene;Acc:416781]
32. GNE ENSGALG00000015331 1577 0.82 - - - - - - - 0.820 - - glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase [Source:NCBI gene;Acc:427285]
33. AARSD1 ENSGALG00000002880 3068 0.819 - - - - - - - 0.819 - - Gallus gallus alanyl-tRNA synthetase domain containing 1 (AARSD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001328355]
34. ENSGALG00000005615 ENSGALG00000005615 4354 0.819 - - - - - - - 0.819 - -
35. FNTA ENSGALG00000015397 3741 0.819 - - - - - - - 0.819 - - farnesyltransferase, CAAX box, alpha [Source:HGNC Symbol;Acc:HGNC:3782]
36. CHST2 ENSGALG00000034507 6172 0.817 - - - - - - - 0.817 - - carbohydrate sulfotransferase 2 [Source:HGNC Symbol;Acc:HGNC:1970]
37. HMOX1 ENSGALG00000012550 1186 0.817 - - - - - - - 0.817 - - heme oxygenase 1 [Source:NCBI gene;Acc:396287]
38. FGD5 ENSGALG00000008546 4031 0.817 - - - - - - - 0.817 - - FYVE, RhoGEF and PH domain containing 5 [Source:HGNC Symbol;Acc:HGNC:19117]
39. C5orf63 C5orf63 3718 0.816 - - - - - - - 0.816 - -
40. C2CD2 ENSGALG00000016148 2734 0.815 - - - - - - - 0.815 - - C2 calcium dependent domain containing 2 [Source:HGNC Symbol;Acc:HGNC:1266]
41. CXorf23 1582 0.815 - - - - - - - 0.815 - - chromosome X open reading frame 23, transcript variant X3
42. PLA2G7 ENSGALG00000016713 2100 0.815 - - - - - - - 0.815 - - phospholipase A2 group VII [Source:NCBI gene;Acc:395816]
43. MAP4K5 ENSGALG00000012321 3036 0.815 - - - - - - - 0.815 - - mitogen-activated protein kinase kinase kinase kinase 5 [Source:HGNC Symbol;Acc:HGNC:6867]
44. PAM16 9684 0.814 - - - - - - - 0.814 - - presequence translocase associated motor 16 homolog, transcript variant X2
45. TLN2 2295 0.814 - - - - - - - 0.814 - - talin 2, transcript variant X5
46. UBE2Q2 3861 0.813 - - - - - - - 0.813 - - ubiquitin conjugating enzyme E2 Q2, transcript variant X4
47. WDR82 ENSGALG00000025904 4783 0.813 - - - - - - - 0.813 - - WD repeat domain 82 [Source:NCBI gene;Acc:415942]
48. FGD3 ENSGALG00000005237 4410 0.813 - - - - - - - 0.813 - - FYVE, RhoGEF and PH domain containing 3 [Source:HGNC Symbol;Acc:HGNC:16027]
49. DLGAP4 ENSGALG00000001046 6872 0.813 - - - - - - - 0.813 - - DLG associated protein 4 [Source:HGNC Symbol;Acc:HGNC:24476]
50. UTP23 ENSGALG00000032400 3601 0.812 - - - - - - - 0.812 - - UTP23, small subunit processome component [Source:HGNC Symbol;Acc:HGNC:28224]
51. VPS26A ENSGALG00000004174 9198 0.812 - - - - - - - 0.812 - - VPS26, retromer complex component A [Source:HGNC Symbol;Acc:HGNC:12711]
52. HVCN1 ENSGALG00000004562 2550 0.812 - - - - - - - 0.812 - - hydrogen voltage gated channel 1 [Source:NCBI gene;Acc:416871]
53. EXOSC1 ENSGALG00000039917 5259 0.812 - - - - - - - 0.812 - - exosome component 1 [Source:HGNC Symbol;Acc:HGNC:17286]
54. CABLES1 ENSGALG00000014998 1636 0.811 - - - - - - - 0.811 - - Cdk5 and Abl enzyme substrate 1 [Source:HGNC Symbol;Acc:HGNC:25097]
55. SLC16A1 ENSGALG00000001717 18566 0.81 - - - - - - - 0.810 - - solute carrier family 16 member 1 [Source:NCBI gene;Acc:419875]
56. MRPL10 ENSGALG00000014387 12386 0.81 - - - - - - - 0.810 - - mitochondrial ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:14055]
57. RABL5 RABL5 5264 0.807 - - - - - - - 0.807 - -
58. ITCH ENSGALG00000040474 2646 0.806 - - - - - - - 0.806 - - itchy E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:13890]
59. CTSA ENSGALG00000006876 5380 0.805 - - - - - - - 0.805 - - cathepsin A [Source:NCBI gene;Acc:428163]
60. C1orf21 ENSGALG00000020922 4035 0.805 - - - - - - - 0.805 - - chromosome 1 open reading frame 21 [Source:HGNC Symbol;Acc:HGNC:15494]
61. SIRT6 ENSGALG00000001245 3716 0.805 - - - - - - 0.805 - - - sirtuin 6 [Source:NCBI gene;Acc:428332]
62. TAF12 ENSGALG00000000991 8709 0.802 - - - - - - - 0.802 - - TATA-box binding protein associated factor 12 [Source:NCBI gene;Acc:419585]
63. EMC1 ENSGALG00000003969 6876 0.8 - - - - - - - 0.800 - - ER membrane protein complex subunit 1 [Source:NCBI gene;Acc:419470]
64. AKR1B10L3 ENSGALG00000019284 5869 0.798 - - - - - - - 0.798 - - aldo-keto reductase family 1 member B10-like 3
65. CPEB2 ENSGALG00000014516 1187 0.798 - - - - - - - 0.798 - - cytoplasmic polyadenylation element binding protein 2 [Source:HGNC Symbol;Acc:HGNC:21745]
66. TARS ENSGALG00000003288 12702 0.796 - - - - - - - 0.796 - - threonyl-tRNA synthetase [Source:NCBI gene;Acc:427427]
67. WDR45B ENSGALG00000001563 5870 0.795 - - - - - - - 0.795 - - WD repeat domain 45B [Source:NCBI gene;Acc:417339]
68. AP4E1 2726 0.795 - - - - - - 0.795 - - - adaptor related protein complex 4 epsilon 1 subunit, transcript variant X2
69. METTL6 ENSGALG00000040665 4467 0.794 - - - - - - - 0.794 - - methyltransferase like 6 [Source:HGNC Symbol;Acc:HGNC:28343]
70. ENSGALG00000020092 ENSGALG00000020092 3067 0.794 - - - - - - - 0.794 - -
71. UBE2J2 ENSGALG00000001848 6527 0.793 - - - - - - - 0.793 - - ubiquitin conjugating enzyme E2 J2 [Source:HGNC Symbol;Acc:HGNC:19268]
72. C10orf11 C10orf11 3087 0.793 - - - - - - - 0.793 - -
73. HOXA9 ENSGALG00000028983 9298 0.792 - - - - - - 0.792 - - - homeobox A9 [Source:NCBI gene;Acc:396096]
74. MYO1B ENSGALG00000007712 8755 0.791 - - - - - - - - 0.791 - myosin IB [Source:HGNC Symbol;Acc:HGNC:7596]
75. TYW3 ENSGALG00000032549 4869 0.79 - - - - - - - 0.790 - - tRNA-yW synthesizing protein 3 homolog [Source:NCBI gene;Acc:424720]
76. TXNDC9 ENSGALG00000032090 6804 0.789 - - - - - - 0.789 - - - thioredoxin domain containing 9 [Source:HGNC Symbol;Acc:HGNC:24110]
77. MBNL2 ENSGALG00000016890 3162 0.789 - - - - - - - 0.789 - - muscleblind like splicing regulator 2 [Source:NCBI gene;Acc:418784]
78. TARDBP ENSGALG00000002906 24748 0.788 - - - - - - 0.788 - - - TAR DNA binding protein [Source:NCBI gene;Acc:419453]
79. CDC73 ENSGALG00000002469 4586 0.784 - - - - - - - 0.784 - - cell division cycle 73 [Source:NCBI gene;Acc:424356]
80. SRP9 ENSGALG00000026009 12418 0.783 - - - - - - - 0.783 - - signal recognition particle 9 [Source:NCBI gene;Acc:770243]
81. SRPK2 ENSGALG00000008154 7385 0.782 - - - - - - - 0.782 - - SRSF protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:11306]
82. MRPL28 ENSGALG00000007473 19134 0.782 - - - - - - - 0.782 - - mitochondrial ribosomal protein L28 [Source:NCBI gene;Acc:426121]
83. PHF20L1 ENSGALG00000033205 7598 0.781 - - - - - - - 0.781 - - PHD finger protein 20 like 1 [Source:NCBI gene;Acc:420323]
84. PCDH1 ENSGALG00000002553 2938 0.78 - - - - - - - 0.780 - - protocadherin 1 [Source:NCBI gene;Acc:416194]
85. TAPA1 TAPA1 8669 0.78 - - - - - - 0.780 - - -
86. TCEA2 ENSGALG00000005976 9143 0.779 - - - - - - - 0.779 - - transcription elongation factor A2 [Source:HGNC Symbol;Acc:HGNC:11614]
87. POLR2C ENSGALG00000001168 10703 0.779 - - - - - - - 0.779 - - RNA polymerase II subunit C [Source:NCBI gene;Acc:415635]
88. FAM120A ENSGALG00000039316 28650 0.778 - - - - - - - 0.778 - - family with sequence similarity 120A, transcript variant X1
89. RNFT1 ENSGALG00000005205 2888 0.777 - - - - - - 0.777 - - - ring finger protein, transmembrane 1 [Source:HGNC Symbol;Acc:HGNC:30206]
90. TMEFF1 ENSGALG00000013212 4222 0.773 - - - - - - 0.773 - - - transmembrane protein with EGF-like and two follistatin-like domains 1
91. RPB6 RPB6 9517 0.771 - - - - - - 0.771 - - -
92. ILF2 ENSGALG00000011570 23050 0.77 - - - - - - 0.770 - - - interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:HGNC:6037]
93. DHX30 ENSGALG00000039830 5187 0.769 - - - - - - 0.769 - - - DExH-box helicase 30 [Source:NCBI gene;Acc:420376]
94. LUC7L3 ENSGALG00000007386 11944 0.767 - - - - - - - 0.767 - - LUC7 like 3 pre-mRNA splicing factor [Source:NCBI gene;Acc:428677]
95. URB1 ENSGALG00000015887 5854 0.767 - - - - - - 0.767 - - - URB1 ribosome biogenesis 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:17344]
96. LOC426385 ENSGALG00000026301 2703 0.766 - - - - - - 0.766 - - - serine/threonine kinase 35-like, transcript variant X2
97. gga-mir-7476 gga-mir-7476 20209 0.766 - - - - - - 0.766 - - -
98. C5H14ORF166 C5H14ORF166 24176 0.766 - - - - - - - 0.766 - -
99. BRMS1L ENSGALG00000010093 4964 0.766 - - - - - - 0.766 - - - BRMS1 like transcriptional repressor [Source:NCBI gene;Acc:423328]
100. TNRC6A ENSGALG00000006068 9166 0.765 - - - - - - - 0.765 - - trinucleotide repeat containing 6A [Source:HGNC Symbol;Acc:HGNC:11969]

There are 119 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA