Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PRPF3

Gene Name Gene ID Reads Annotation
PRPF3 ENSGALG00000028205 3791 pre-mRNA processing factor 3 [Source:NCBI gene;Acc:426667]











Genes with expression patterns similar to PRPF3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PRPF3 ENSGALG00000028205 3791 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 pre-mRNA processing factor 3 [Source:NCBI gene;Acc:426667]
2. RFC1 ENSGALG00000014298 6516 1.518 - - - - - - 0.742 0.776 - - replication factor C subunit 1 [Source:NCBI gene;Acc:422788]
3. PCTP ENSGALG00000003099 5851 1.482 - - - - - - 0.728 0.754 - - phosphatidylcholine transfer protein [Source:HGNC Symbol;Acc:HGNC:8752]
4. KNTC1 ENSGALG00000004515 1417 0.864 - - - - - - - 0.864 - - kinetochore associated 1 [Source:HGNC Symbol;Acc:HGNC:17255]
5. RMND5A ENSGALG00000015815 2903 0.842 - - - - - - - 0.842 - - required for meiotic nuclear division 5 homolog A [Source:NCBI gene;Acc:422920]
6. CHDZ CHDZ 10381 0.826 - - - - - - - 0.826 - -
7. C4orf27 C4orf27 16724 0.82 - - - - - - - 0.820 - -
8. TSTD1 TSTD1 3613 0.815 - - - - - - - 0.815 - -
9. UTP18 ENSGALG00000002985 7129 0.814 - - - - - - - 0.814 - - UTP18, small subunit processome component [Source:HGNC Symbol;Acc:HGNC:24274]
10. HPS5 ENSGALG00000027716 2466 0.81 - - - - - - - 0.810 - - HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
11. GLE1 ENSGALG00000004738 6483 0.795 - - - - - - - 0.795 - - GLE1, RNA export mediator [Source:HGNC Symbol;Acc:HGNC:4315]
12. CHRAC1 ENSGALG00000040823 5695 0.79 - - - - - - - 0.790 - - chromatin accessibility complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:13544]
13. TMEM165 ENSGALG00000027886 5468 0.786 - - - - - - - 0.786 - - transmembrane protein 165 [Source:HGNC Symbol;Acc:HGNC:30760]
14. TBP ENSGALG00000011171 5759 0.782 - - - - - - - 0.782 - - TATA-box binding protein [Source:NCBI gene;Acc:395995]
15. LIMD1 ENSGALG00000035623 7282 0.782 - - - - - - 0.782 - - - LIM domains containing 1 [Source:HGNC Symbol;Acc:HGNC:6612]
16. BPGM ENSGALG00000013069 4520 0.781 - - - - - - - 0.781 - - bisphosphoglycerate mutase [Source:NCBI gene;Acc:418172]
17. RNF219 ENSGALG00000016911 4458 0.778 - - - - - - - 0.778 - - ring finger protein 219 [Source:HGNC Symbol;Acc:HGNC:20308]
18. RPP40 ENSGALG00000036074 2068 0.777 - - - - - - - 0.777 - - ribonuclease P/MRP subunit p40 [Source:HGNC Symbol;Acc:HGNC:20992]
19. INTS10 ENSGALG00000010130 6320 0.774 - - - - - - - 0.774 - - integrator complex subunit 10 [Source:NCBI gene;Acc:422489]
20. CTNNBL1 ENSGALG00000006817 6765 0.774 - - - - - - - 0.774 - - catenin beta like 1 [Source:HGNC Symbol;Acc:HGNC:15879]
21. EMC3 ENSGALG00000003738 10363 0.774 - - - - - - - 0.774 - - ER membrane protein complex subunit 3 [Source:NCBI gene;Acc:415936]
22. NRBP1 ENSGALG00000016512 4725 0.773 - - - - - - 0.773 - - - nuclear receptor binding protein 1 [Source:NCBI gene;Acc:421985]
23. AP1S3 ENSGALG00000005171 2981 0.773 - - - - - - - 0.773 - - adaptor related protein complex 1 subunit sigma 3 [Source:NCBI gene;Acc:424807]
24. STRN3 ENSGALG00000040464 9045 0.773 - - - - - - - 0.773 - - striatin 3 [Source:HGNC Symbol;Acc:HGNC:15720]
25. SRSF5 ENSGALG00000009421 8502 0.773 - - - - - - - 0.773 - - serine and arginine rich splicing factor 5 [Source:NCBI gene;Acc:423258]
26. LBR 6686 0.772 - - - - - - - 0.772 - - lamin B receptor, transcript variant X4
27. METTL21A ENSGALG00000008493 3188 0.77 - - - - - - - 0.770 - - methyltransferase like 21A [Source:NCBI gene;Acc:424094]
28. NUP214 ENSGALG00000041111 4902 0.769 - - - - - - - 0.769 - - nucleoporin 214 [Source:HGNC Symbol;Acc:HGNC:8064]
29. DCLK2 ENSGALG00000032386 2253 0.768 - - - - - - - 0.768 - - doublecortin like kinase 2 [Source:HGNC Symbol;Acc:HGNC:19002]
30. GCSH ENSGALG00000032679 29231 0.767 - - - - - - - 0.767 - - glycine cleavage system protein H [Source:NCBI gene;Acc:415803]
31. ANLN 10479 0.766 - - - - - - - 0.766 - - anillin actin binding protein, transcript variant X2
32. GABPB1 ENSGALG00000023440 5676 0.766 - - - - - - - 0.766 - - GA binding protein transcription factor beta subunit 1 [Source:NCBI gene;Acc:415453]
33. ASPG ENSGALG00000011572 4984 0.762 - - - - - - - 0.762 - - asparaginase [Source:HGNC Symbol;Acc:HGNC:20123]
34. NUBPL ENSGALG00000009983 3328 0.762 - - - - - - - 0.762 - - nucleotide binding protein like [Source:HGNC Symbol;Acc:HGNC:20278]
35. DNAJC25 ENSGALG00000015684 4554 0.762 - - - - - - - 0.762 - - DnaJ heat shock protein family (Hsp40) member C25
36. COX11 ENSGALG00000027190 4475 0.76 - - - - - - - 0.760 - - cytochrome c oxidase copper chaperone COX11 [Source:HGNC Symbol;Acc:HGNC:2261]
37. GARNL3 ENSGALG00000000847 3423 0.758 - - - - - - - 0.758 - - GTPase activating Rap/RanGAP domain like 3 [Source:NCBI gene;Acc:417087]
38. NDUFA12 ENSGALG00000011325 19807 0.758 - - - - - - - 0.758 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:NCBI gene;Acc:417907]
39. HMGB3 ENSGALG00000009071 12011 0.757 - - - - - - - 0.757 - - high mobility group box 3 [Source:NCBI gene;Acc:396232]
40. RAB18 ENSGALG00000007435 3589 0.755 - - - - - - - 0.755 - - RAB18, member RAS oncogene family [Source:NCBI gene;Acc:420483]
41. INTS8 ENSGALG00000037955 3349 0.754 - - - - - - - 0.754 - - integrator complex subunit 8 [Source:NCBI gene;Acc:420230]
42. C10orf88 ENSGALG00000000011 6026 0.754 - - - - - - - 0.754 - - chromosome 10 open reading frame 88 [Source:HGNC Symbol;Acc:HGNC:25822]
43. ZDHHC17 ENSGALG00000010253 2588 0.752 - - - - - - - 0.752 - - zinc finger DHHC-type containing 17 [Source:NCBI gene;Acc:417867]
44. CREBBP ENSGALG00000007762 3050 0.751 - - - - - - 0.751 - - - CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
45. NMT1 ENSGALG00000000857 5770 0.749 - - - - - - 0.749 - - - N-myristoyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:7857]
46. PUS1 ENSGALG00000002354 10153 0.749 - - - - - - - 0.749 - - pseudouridylate synthase 1 [Source:HGNC Symbol;Acc:HGNC:15508]
47. C1H21ORF91 ENSGALG00000028290 5550 0.749 - - - - - - - 0.749 - - chromosome 1 open reading frame, human C21orf91 [Source:NCBI gene;Acc:395489]
48. BLMH ENSGALG00000004259 36907 0.748 - - - - - - - 0.748 - - bleomycin hydrolase [Source:NCBI gene;Acc:395996]
49. INTS12 ENSGALG00000010575 2976 0.748 - - - - - - - 0.748 - - integrator complex subunit 12 [Source:HGNC Symbol;Acc:HGNC:25067]
50. DNAJA4 ENSGALG00000036850 6847 0.747 - - - - - - - 0.747 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
51. SETD3 ENSGALG00000034802 4125 0.746 - - - - - - - 0.746 - - SET domain containing 3 [Source:NCBI gene;Acc:423445]
52. DAD1 ENSGALG00000035626 32604 0.746 - - - - - - - 0.746 - - defender against cell death 1 [Source:NCBI gene;Acc:395343]
53. DNAJB9 ENSGALG00000009492 4868 0.744 - - - - - - - 0.744 - - DnaJ heat shock protein family (Hsp40) member B9 [Source:NCBI gene;Acc:417783]
54. MKRN1 ENSGALG00000012852 6907 0.744 - - - - - - - 0.744 - - makorin ring finger protein 1 [Source:NCBI gene;Acc:395500]
55. C5orf22 ENSGALG00000012909 3537 0.743 - - - - - - - 0.743 - - chromosome 5 open reading frame 22 [Source:HGNC Symbol;Acc:HGNC:25639]
56. DGCR2 ENSGALG00000005891 8405 0.743 - - - - - - 0.743 - - - DiGeorge syndrome critical region gene 2 [Source:HGNC Symbol;Acc:HGNC:2845]
57. DNTTIP2 4528 0.743 - - - - - - - 0.743 - - deoxynucleotidyltransferase, terminal, interacting protein 2, transcript variant X3
58. QTRTD1 QTRTD1 10765 0.741 - - - - - - - 0.741 - -
59. SPCS1 ENSGALG00000001655 7718 0.741 - - - - - - - 0.741 - - signal peptidase complex subunit 1 [Source:NCBI gene;Acc:415899]
60. RIMS1 ENSGALG00000015944 1675 0.74 - - - - - - - 0.740 - - regulating synaptic membrane exocytosis 1 [Source:HGNC Symbol;Acc:HGNC:17282]
61. PCF11 ENSGALG00000017249 4714 0.74 - - - - - - - 0.740 - - PCF11 cleavage and polyadenylation factor subunit, transcript variant X4
62. METTL8 ENSGALG00000009564 912 0.74 - - - - - - - 0.740 - - methyltransferase like 8 [Source:HGNC Symbol;Acc:HGNC:25856]
63. PPAPDC1B PPAPDC1B 6698 0.739 - - - - - - 0.739 - - -
64. IMPA2 ENSGALG00000013814 4202 0.739 - - - - - - - 0.739 - - inositol monophosphatase 2 [Source:HGNC Symbol;Acc:HGNC:6051]
65. C1QBP ENSGALG00000001654 34814 0.738 - - - - - - 0.738 - - - complement C1q binding protein [Source:HGNC Symbol;Acc:HGNC:1243]
66. AP2A2 ENSGALG00000006799 13874 0.736 - - - - - - 0.736 - - - adaptor related protein complex 2 subunit alpha 2 [Source:NCBI gene;Acc:423102]
67. XRN2 ENSGALG00000008372 22164 0.736 - - - - - - 0.736 - - - 5'-3' exoribonuclease 2 [Source:NCBI gene;Acc:421236]
68. DSCC1 ENSGALG00000043799 2436 0.735 - - - - - - - 0.735 - - DNA replication and sister chromatid cohesion 1 [Source:HGNC Symbol;Acc:HGNC:24453]
69. PTPMT1 ENSGALG00000008091 6160 0.735 - - - - - - - 0.735 - - protein tyrosine phosphatase, mitochondrial 1 [Source:NCBI gene;Acc:423181]
70. RNF111 ENSGALG00000004171 2696 0.734 - - - - - - - 0.734 - - ring finger protein 111 [Source:NCBI gene;Acc:374021]
71. F F 3639 0.734 - - - - - - - 0.734 - -
72. CCNC ENSGALG00000015471 6497 0.733 - - - - - - 0.733 - - - cyclin C [Source:NCBI gene;Acc:421791]
73. TBL3 ENSGALG00000005558 8363 0.733 - - - - - - - 0.733 - - transducin beta like 3 [Source:NCBI gene;Acc:416545]
74. MRPS22 ENSGALG00000005367 8307 0.732 - - - - - - - 0.732 - - mitochondrial ribosomal protein S22 [Source:HGNC Symbol;Acc:HGNC:14508]
75. CDC37L1 ENSGALG00000014448 2283 0.732 - - - - - - 0.732 - - - cell division cycle 37 like 1 [Source:HGNC Symbol;Acc:HGNC:17179]
76. EIF5B ENSGALG00000016764 30681 0.732 - - - - - - - 0.732 - - eukaryotic translation initiation factor 5B [Source:NCBI gene;Acc:395514]
77. COX17 ENSGALG00000014981 5646 0.731 - - - - - - 0.731 - - - COX17, cytochrome c oxidase copper chaperone [Source:NCBI gene;Acc:770190]
78. SEC62 ENSGALG00000009379 15745 0.731 - - - - - - - 0.731 - - SEC62 homolog, preprotein translocation factor [Source:NCBI gene;Acc:424993]
79. ACADS ENSGALG00000007072 2737 0.731 - - - - - - 0.731 - - - acyl-CoA dehydrogenase short chain [Source:NCBI gene;Acc:416969]
80. UBE2K ENSGALG00000014290 2138 0.731 - - - - - - - 0.731 - - ubiquitin conjugating enzyme E2 K [Source:NCBI gene;Acc:428787]
81. MSH6 ENSGALG00000008957 6396 0.731 - - - - - - - 0.731 - - mutS homolog 6 [Source:HGNC Symbol;Acc:HGNC:7329]
82. NUDT7 ENSGALG00000034395 7396 0.73 - - - - - - - 0.730 - - nudix hydrolase 7 [Source:NCBI gene;Acc:415800]
83. LSM5 ENSGALG00000041625 22307 0.73 - - - - - - 0.730 - - - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420751]
84. VBP1 VBP1 14482 0.729 - - - - - - 0.729 - - -
85. CACYBP ENSGALG00000004554 7320 0.729 - - - - - - - 0.729 - - calcyclin binding protein [Source:HGNC Symbol;Acc:HGNC:30423]
86. TRAF3IP1 ENSGALG00000004236 7094 0.728 - - - - - - - 0.728 - - TRAF3 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:17861]
87. ERLIN2 ENSGALG00000003092 18251 0.728 - - - - - - - 0.728 - - ER lipid raft associated 2 [Source:HGNC Symbol;Acc:HGNC:1356]
88. PANK4 ENSGALG00000001165 2356 0.728 - - - - - - 0.728 - - - pantothenate kinase 4 [Source:NCBI gene;Acc:100736561]
89. PEMT ENSGALG00000004875 4094 0.728 - - - - - - - 0.728 - - phosphatidylethanolamine N-methyltransferase [Source:NCBI gene;Acc:416508]
90. BPNT1 ENSGALG00000009576 7445 0.727 - - - - - - - 0.727 - - 3'(2'), 5'-bisphosphate nucleotidase 1 [Source:NCBI gene;Acc:421347]
91. HMGCS1 ENSGALG00000014862 2846 0.727 - - - - - - 0.727 - - - 3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:NCBI gene;Acc:396379]
92. ASMTL ENSGALG00000016689 1802 0.726 - - - - - - - 0.726 - - acetylserotonin O-methyltransferase like [Source:HGNC Symbol;Acc:HGNC:751]
93. SKP1 ENSGALG00000006474 37807 0.726 - - - - - - - 0.726 - - S-phase kinase-associated protein 1 [Source:NCBI gene;Acc:416319]
94. HCCS ENSGALG00000005571 4939 0.726 - - - - - - - 0.726 - - holocytochrome c synthase [Source:NCBI gene;Acc:424482]
95. SCFD1 ENSGALG00000009916 5756 0.726 - - - - - - - 0.726 - - sec1 family domain containing 1 [Source:NCBI gene;Acc:423307]
96. MOCS2 ENSGALG00000014906 4974 0.725 - - - - - - 0.725 - - - molybdenum cofactor synthesis 2 [Source:HGNC Symbol;Acc:HGNC:7193]
97. TDP2 ENSGALG00000013637 6595 0.725 - - - - - - - 0.725 - - tyrosyl-DNA phosphodiesterase 2 [Source:NCBI gene;Acc:421007]
98. TMEM194B TMEM194B 3815 0.725 - - - - - - 0.725 - - -
99. GPBP1L1 ENSGALG00000010276 10253 0.724 - - - - - - - 0.724 - - GC-rich promoter binding protein 1 like 1 [Source:NCBI gene;Acc:424603]
100. PSMB3 ENSGALG00000001597 22588 0.723 - - - - - - - 0.723 - - proteasome subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:9540]

There are 58 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA