Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PIF1

Gene Name Gene ID Reads Annotation
PIF1 ENSGALG00000009032 2342 PIF1 5'-to-3' DNA helicase [Source:HGNC Symbol;Acc:HGNC:26220]











Genes with expression patterns similar to PIF1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PIF1 ENSGALG00000009032 2342 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 PIF1 5'-to-3' DNA helicase [Source:HGNC Symbol;Acc:HGNC:26220]
2. HSF2 ENSGALG00000038420 5259 1.477 - - - - - - 0.773 0.704 - - heat shock transcription factor 2 [Source:NCBI gene;Acc:421724]
3. UBE2E1 ENSGALG00000011286 5483 1.473 - - - - - - 0.761 0.712 - - ubiquitin conjugating enzyme E2 E1 [Source:HGNC Symbol;Acc:HGNC:12477]
4. PARN ENSGALG00000003091 6363 1.413 - - - - - - 0.708 0.705 - - poly(A)-specific ribonuclease [Source:NCBI gene;Acc:416423]
5. IK ENSGALG00000037172 12100 0.916 - - - - - - 0.916 - - - IK cytokine, down-regulator of HLA II [Source:NCBI gene;Acc:416133]
6. RFT1 ENSGALG00000001945 2446 0.904 - - - - - - 0.904 - - - RFT1 homolog [Source:NCBI gene;Acc:770487]
7. PARD3B ENSGALG00000042645 2893 0.901 - - - - - - 0.901 - - - par-3 family cell polarity regulator beta [Source:HGNC Symbol;Acc:HGNC:14446]
8. NUP205 ENSGALG00000011662 4157 0.9 - - - - - - 0.900 - - - nucleoporin 205
9. WIPI1 ENSGALG00000004215 3359 0.896 - - - - - - 0.896 - - - WD repeat domain, phosphoinositide interacting 1 [Source:HGNC Symbol;Acc:HGNC:25471]
10. NAT9 ENSGALG00000007723 2098 0.896 - - - - - - 0.896 - - - N-acetyltransferase 9 (putative), transcript variant X7
11. BRD1 ENSGALG00000029379 6047 0.895 - - - - - - 0.895 - - - bromodomain containing 1 [Source:NCBI gene;Acc:417731]
12. CDC42SE2 ENSGALG00000027258 4725 0.895 - - - - - - 0.895 - - - CDC42 small effector 2 [Source:NCBI gene;Acc:768825]
13. DIEXF ENSGALG00000009887 4782 0.893 - - - - - - 0.893 - - - digestive organ expansion factor homolog (zebrafish) [Source:NCBI gene;Acc:421384]
14. ETAA1 ENSGALG00000027922 1684 0.892 - - - - - - 0.892 - - - ETAA1, ATR kinase activator [Source:HGNC Symbol;Acc:HGNC:24648]
15. MBNL2 ENSGALG00000016890 3162 0.877 - - - - - - 0.877 - - - muscleblind like splicing regulator 2 [Source:NCBI gene;Acc:418784]
16. LFNG ENSGALG00000038515 5178 0.876 - - - - - - 0.876 - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395790]
17. EIF3I ENSGALG00000003337 28832 0.875 - - - - - - 0.875 - - - eukaryotic translation initiation factor 3 subunit I [Source:NCBI gene;Acc:419653]
18. SDK2 ENSGALG00000031895 2682 0.87 - - - - - - 0.870 - - - sidekick cell adhesion molecule 2 [Source:NCBI gene;Acc:395215]
19. GGCT ENSGALG00000030552 3446 0.87 - - - - - - 0.870 - - - gamma-glutamylcyclotransferase
20. ATG4B ENSGALG00000006298 2288 0.868 - - - - - - 0.868 - - - autophagy related 4B cysteine peptidase [Source:NCBI gene;Acc:404750]
21. UCH-L1 UCH-L1 12697 0.867 - - - - - - 0.867 - - -
22. UBE3B ENSGALG00000013851 1672 0.864 - - - - - - 0.864 - - - ubiquitin protein ligase E3B [Source:NCBI gene;Acc:776286]
23. CANX ENSGALG00000032148 11297 0.861 - - - - - - 0.861 - - - calnexin [Source:NCBI gene;Acc:416288]
24. RAB1A ENSGALG00000031582 6929 0.86 - - - - - - 0.860 - - - RAB1A, member RAS oncogene family [Source:NCBI gene;Acc:421273]
25. ALDH18A1 ENSGALG00000034655 3038 0.86 - - - - - - 0.860 - - - aldehyde dehydrogenase 18 family member A1, transcript variant X13
26. FAM57A ENSGALG00000004820 1492 0.86 - - - - - - 0.860 - - - family with sequence similarity 57 member A [Source:HGNC Symbol;Acc:HGNC:29646]
27. TM2D3 ENSGALG00000026271 2566 0.86 - - - - - - 0.860 - - - TM2 domain containing 3 [Source:NCBI gene;Acc:415390]
28. ZNF142 ENSGALG00000011393 2078 0.858 - - - - - - 0.858 - - - zinc finger protein 142 [Source:HGNC Symbol;Acc:HGNC:12927]
29. NT5C2 ENSGALG00000008179 1760 0.857 - - - - - - 0.857 - - - 5'-nucleotidase, cytosolic II [Source:NCBI gene;Acc:423871]
30. SNRNP48 ENSGALG00000013005 1468 0.857 - - - - - - 0.857 - - - small nuclear ribonucleoprotein U11/U12 subunit 48 [Source:HGNC Symbol;Acc:HGNC:21368]
31. NIN ENSGALG00000012361 2284 0.856 - - - - - - 0.856 - - - ninein [Source:HGNC Symbol;Acc:HGNC:14906]
32. C13H5ORF41 C13H5ORF41 1051 0.856 - - - - - - 0.856 - - -
33. ENSGALG00000002852 ENSGALG00000002852 2687 0.855 - - - - - - 0.855 - - -
34. SPG11 ENSGALG00000008180 1890 0.855 - - - - - - 0.855 - - - SPG11, spatacsin vesicle trafficking associated [Source:HGNC Symbol;Acc:HGNC:11226]
35. BMI1 ENSGALG00000041267 6618 0.854 - - - - - - 0.854 - - - BMI1 proto-oncogene, polycomb ring finger [Source:NCBI gene;Acc:493647]
36. GAS6 ENSGALG00000016820 481 0.853 - - - - - - 0.853 - - - growth arrest specific 6 [Source:HGNC Symbol;Acc:HGNC:4168]
37. RNF20 ENSGALG00000015548 7199 0.853 - - - - - - 0.853 - - - ring finger protein 20 [Source:NCBI gene;Acc:427310]
38. MTDH ENSGALG00000034050 9525 0.853 - - - - - - 0.853 - - - metadherin [Source:HGNC Symbol;Acc:HGNC:29608]
39. MED16 ENSGALG00000001978 2387 0.852 - - - - - - 0.852 - - - mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
40. FAM193A ENSGALG00000015667 3075 0.852 - - - - - - 0.852 - - - family with sequence similarity 193 member A [Source:HGNC Symbol;Acc:HGNC:16822]
41. SGSM3 ENSGALG00000012033 1839 0.852 - - - - - - 0.852 - - - small G protein signaling modulator 3 [Source:HGNC Symbol;Acc:HGNC:25228]
42. ENSGALG00000028164 ENSGALG00000028164 3325 0.852 - - - - - - 0.852 - - -
43. PKN3 532 0.852 - - - - - - 0.852 - - - protein kinase N3, transcript variant X2
44. OMA1 ENSGALG00000010861 3328 0.851 - - - - - - 0.851 - - - OMA1 zinc metallopeptidase [Source:HGNC Symbol;Acc:HGNC:29661]
45. MBTPS1 ENSGALG00000003293 4843 0.851 - - - - - - 0.851 - - - membrane bound transcription factor peptidase, site 1 [Source:HGNC Symbol;Acc:HGNC:15456]
46. ENSGALG00000013233 ENSGALG00000013233 3265 0.851 - - - - - - 0.851 - - -
47. SELM SELM 6366 0.851 - - - - - - 0.851 - - -
48. NCAPG2 ENSGALG00000006525 2319 0.851 - - - - - - 0.851 - - - non-SMC condensin II complex subunit G2 [Source:HGNC Symbol;Acc:HGNC:21904]
49. SUGP1 ENSGALG00000042132 2771 0.85 - - - - - - 0.850 - - - SURP and G-patch domain containing 1 [Source:NCBI gene;Acc:428349]
50. PAPD7 ENSGALG00000013061 2031 0.849 - - - - - - 0.849 - - - poly(A) RNA polymerase D7, non-canonical [Source:NCBI gene;Acc:770425]
51. MGLL ENSGALG00000032736 612 0.849 - - - - - - 0.849 - - - monoglyceride lipase [Source:NCBI gene;Acc:416024]
52. C14orf80 C14orf80 1921 0.849 - - - - - - 0.849 - - -
53. LSM10 ENSGALG00000002127 2519 0.848 - - - - - - 0.848 - - - LSM10, U7 small nuclear RNA associated [Source:HGNC Symbol;Acc:HGNC:17562]
54. MESDC1 1013 0.846 - - - - - - 0.846 - - - mesoderm development candidate 1
55. HELLS ENSGALG00000005451 7094 0.845 - - - - - - 0.845 - - - helicase, lymphoid specific [Source:HGNC Symbol;Acc:HGNC:4861]
56. TAF8 ENSGALG00000003498 2071 0.845 - - - - - - 0.845 - - - TATA-box binding protein associated factor 8 [Source:NCBI gene;Acc:419929]
57. CHOCT-1 CHOCT-1 3422 0.844 - - - - - - 0.844 - - -
58. MST1 ENSGALG00000002722 994 0.844 - - - - - - 0.844 - - - macrophage stimulating 1 (hepatocyte growth factor-like) [Source:NCBI gene;Acc:396135]
59. KANK4 ENSGALG00000010953 726 0.843 - - - - - - 0.843 - - - KN motif and ankyrin repeat domains 4 [Source:HGNC Symbol;Acc:HGNC:27263]
60. NPHP4 ENSGALG00000000966 1698 0.843 - - - - - - 0.843 - - - nephrocystin 4, transcript variant X5
61. SUN1 ENSGALG00000003781 3442 0.843 - - - - - - 0.843 - - - Sad1 and UNC84 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18587]
62. CDC73 ENSGALG00000002469 4586 0.843 - - - - - - 0.843 - - - cell division cycle 73 [Source:NCBI gene;Acc:424356]
63. CCDC101 CCDC101 9111 0.843 - - - - - - 0.843 - - -
64. SPAG9 ENSGALG00000034001 2314 0.842 - - - - - - 0.842 - - - sperm associated antigen 9 [Source:HGNC Symbol;Acc:HGNC:14524]
65. TMEM135 2283 0.842 - - - - - - 0.842 - - - transmembrane protein 135, transcript variant X4
66. CSTF3 ENSGALG00000011685 4711 0.842 - - - - - - 0.842 - - - cleavage stimulation factor subunit 3 [Source:NCBI gene;Acc:421595]
67. HESX1 ENSGALG00000005506 203 0.841 - - - - - - 0.841 - - - HESX homeobox 1 [Source:NCBI gene;Acc:395864]
68. MRPL10 ENSGALG00000014387 12386 0.841 - - - - - - 0.841 - - - mitochondrial ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:14055]
69. NSRP1 ENSGALG00000004186 1683 0.841 - - - - - - 0.841 - - - nuclear speckle splicing regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:25305]
70. B4GALT3 ENSGALG00000022891 2825 0.841 - - - - - - 0.841 - - - beta-1,4-galactosyltransferase 3
71. ENTPD8L ENSGALG00000008936 731 0.84 - - - - - - 0.840 - - - ectonucleoside triphosphate diphosphohydrolase 8-like
72. ZFYVE19 ENSGALG00000008460 2750 0.84 - - - - - - 0.840 - - - zinc finger FYVE-type containing 19 [Source:NCBI gene;Acc:423204]
73. KANK1 ENSGALG00000010158 3780 0.84 - - - - - - 0.840 - - - KN motif and ankyrin repeat domains 1 [Source:NCBI gene;Acc:395475]
74. SCAF4 ENSGALG00000033965 2027 0.84 - - - - - - 0.840 - - - SR-related CTD associated factor 4 [Source:NCBI gene;Acc:418492]
75. ECHDC3 ENSGALG00000006690 1299 0.839 - - - - - - 0.839 - - - enoyl-CoA hydratase domain containing 3 [Source:NCBI gene;Acc:419098]
76. NDUFV3 ENSGALG00000022813 4456 0.839 - - - - - - 0.839 - - - NADH:ubiquinone oxidoreductase subunit V3 [Source:NCBI gene;Acc:418541]
77. RAB3IP ENSGALG00000009959 1652 0.839 - - - - - - 0.839 - - - RAB3A interacting protein, transcript variant X1
78. VPS36 ENSGALG00000017026 3658 0.836 - - - - - - 0.836 - - - vacuolar protein sorting 36 homolog [Source:HGNC Symbol;Acc:HGNC:20312]
79. GPN3 ENSGALG00000003807 6320 0.835 - - - - - - 0.835 - - - GPN-loop GTPase 3 [Source:HGNC Symbol;Acc:HGNC:30186]
80. DNAJC16 ENSGALG00000032832 750 0.835 - - - - - - 0.835 - - - DnaJ heat shock protein family (Hsp40) member C16 [Source:NCBI gene;Acc:429208]
81. DAB2 ENSGALG00000003803 6143 0.835 - - - - - - 0.835 - - - DAB2, clathrin adaptor protein [Source:HGNC Symbol;Acc:HGNC:2662]
82. WDSUB1 ENSGALG00000012574 2038 0.834 - - - - - - 0.834 - - - WD repeat, sterile alpha motif and U-box domain containing 1 [Source:NCBI gene;Acc:424331]
83. PEX16 ENSGALG00000008421 3684 0.834 - - - - - - 0.834 - - - peroxisomal biogenesis factor 16 [Source:HGNC Symbol;Acc:HGNC:8857]
84. PARL ENSGALG00000002315 15943 0.833 - - - - - - 0.833 - - - presenilin associated rhomboid like
85. NEK4 ENSGALG00000041428 4473 0.833 - - - - - - 0.833 - - - NIMA related kinase 4 [Source:HGNC Symbol;Acc:HGNC:11399]
86. SRP72 ENSGALG00000011403 13666 0.832 - - - - - - 0.832 - - - signal recognition particle 72 [Source:NCBI gene;Acc:422626]
87. SNORA31 SNORA31 183 0.832 - - - - - - 0.832 - - -
88. TM9SF4 ENSGALG00000006568 567 0.831 - - - - - - 0.831 - - - transmembrane 9 superfamily member 4 [Source:HGNC Symbol;Acc:HGNC:30797]
89. ATM ENSGALG00000017159 893 0.831 - - - - - - 0.831 - - - ATM serine/threonine kinase [Source:NCBI gene;Acc:395401]
90. PAM16 9684 0.83 - - - - - - 0.830 - - - presequence translocase associated motor 16 homolog, transcript variant X2
91. FAM183A 242 0.83 - - - - - - 0.830 - - - family with sequence similarity 183 member A, transcript variant 2
92. CEP290 ENSGALG00000011177 1559 0.829 - - - - - - 0.829 - - - centrosomal protein 290 [Source:HGNC Symbol;Acc:HGNC:29021]
93. PEX6 ENSGALG00000045514 4582 0.829 - - - - - - 0.829 - - - peroxisomal biogenesis factor 6 [Source:HGNC Symbol;Acc:HGNC:8859]
94. PIK3R3 ENSGALG00000010335 374 0.829 - - - - - - 0.829 - - - phosphoinositide-3-kinase regulatory subunit 3, transcript variant X1
95. HTATSF1 ENSGALG00000006410 3526 0.828 - - - - - - 0.828 - - - HIV-1 Tat specific factor 1 [Source:HGNC Symbol;Acc:HGNC:5276]
96. ERMP1 ENSGALG00000000438 1136 0.828 - - - - - - 0.828 - - - endoplasmic reticulum metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:23703]
97. PMPCB ENSGALG00000008280 6357 0.827 - - - - - - 0.827 - - - peptidase, mitochondrial processing beta subunit [Source:NCBI gene;Acc:417718]
98. FTSJ2 FTSJ2 2951 0.827 - - - - - - 0.827 - - -
99. CCNE2 ENSGALG00000040794 1229 0.827 - - - - - - 0.827 - - - cyclin E2 [Source:NCBI gene;Acc:420231]
100. TCTE1 ENSGALG00000010165 65 0.826 - - - - - - 0.826 - - - t-complex-associated-testis-expressed 1 [Source:HGNC Symbol;Acc:HGNC:11693]

There are 206 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA