Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PHGDH

Gene Name Gene ID Reads Annotation
PHGDH ENSGALG00000002988 6912 phosphoglycerate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:8923]











Genes with expression patterns similar to PHGDH

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PHGDH ENSGALG00000002988 6912 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 phosphoglycerate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:8923]
2. ABCC10 2213 1.77 - - 0.774 - - - 0.996 - - - ATP binding cassette subfamily C member 10, transcript variant X10
3. ANO5 ENSGALG00000003748 3959 1.491 - - 0.749 - - - - 0.742 - - anoctamin 5 [Source:NCBI gene;Acc:422973]
4. CAND1 4541 0.996 - - - - - - 0.996 - - - cullin associated and neddylation dissociated 1
5. TMEM62 ENSGALG00000009260 1170 0.996 - - - - - - 0.996 - - - transmembrane protein 62 [Source:HGNC Symbol;Acc:HGNC:26269]
6. PTBP2 ENSGALG00000005552 3443 0.996 - - - - - - 0.996 - - - polypyrimidine tract binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17662]
7. TMC1 ENSGALG00000015145 1180 0.996 - - - - - - 0.996 - - - transmembrane channel like 1 [Source:NCBI gene;Acc:427255]
8. TMEM120B ENSGALG00000004254 2819 0.996 - - - - - - 0.996 - - - transmembrane protein 120B [Source:NCBI gene;Acc:416847]
9. CTU2 4818 0.996 - - - - - - 0.996 - - - cytosolic thiouridylase subunit 2, transcript variant X3
10. ENSGALG00000014190 ENSGALG00000014190 5735 0.996 - - - - - - 0.996 - - -
11. TMEM97 ENSGALG00000005702 2037 0.996 - - - - - - 0.996 - - - transmembrane protein 97 [Source:HGNC Symbol;Acc:HGNC:28106]
12. EGFLAM ENSGALG00000003726 4588 0.996 - - - - - - 0.996 - - - EGF like, fibronectin type III and laminin G domains, transcript variant X1
13. BMP3 ENSGALG00000035052 3260 0.996 - - - - - - 0.996 - - - bone morphogenetic protein 3 [Source:NCBI gene;Acc:422581]
14. HOXD8 ENSGALG00000037272 4338 0.995 - - - - - - 0.995 - - - homeobox D8 [Source:NCBI gene;Acc:396301]
15. M6PR ENSGALG00000031681 9442 0.995 - - - - - - 0.995 - - - mannose-6-phosphate receptor, cation dependent, transcript variant X3
16. POLR1C ENSGALG00000010349 7059 0.995 - - - - - - 0.995 - - - RNA polymerase I and III subunit C [Source:NCBI gene;Acc:421452]
17. MRPL32 ENSGALG00000037258 6861 0.995 - - - - - - 0.995 - - - mitochondrial ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:14035]
18. MOB3A ENSGALG00000031729 9690 0.994 - - - - - - 0.994 - - - MOB kinase activator 3A [Source:HGNC Symbol;Acc:HGNC:29802]
19. ENSGALG00000004773 ENSGALG00000004773 10418 0.993 - - - - - - 0.993 - - -
20. MCM2 ENSGALG00000006037 13458 0.993 - - - - - - 0.993 - - - minichromosome maintenance complex component 2 [Source:NCBI gene;Acc:416027]
21. IMP4 ENSGALG00000029152 11669 0.993 - - - - - - 0.993 - - - IMP4, U3 small nucleolar ribonucleoprotein [Source:NCBI gene;Acc:100857200]
22. DDX21 ENSGALG00000004144 13105 0.991 - - - - - - 0.991 - - - DExD-box helicase 21 [Source:HGNC Symbol;Acc:HGNC:2744]
23. PFDN4 ENSGALG00000007792 26514 0.99 - - - - - - 0.990 - - - prefoldin subunit 4 [Source:NCBI gene;Acc:419337]
24. EIF3J ENSGALG00000008187 43570 0.99 - - - - - - 0.990 - - - eukaryotic translation initiation factor 3 subunit J [Source:NCBI gene;Acc:415573]
25. POLR2D ENSGALG00000002057 14548 0.99 - - - - - - 0.990 - - - RNA polymerase II subunit D [Source:NCBI gene;Acc:424754]
26. CHNTHL1 CHNTHL1 4976 0.987 - - - - - - 0.987 - - -
27. ITGA1 ENSGALG00000014891 11378 0.987 - - - - - - 0.987 - - - integrin subunit alpha 1 [Source:NCBI gene;Acc:395951]
28. PRDX6 ENSGALG00000003053 17928 0.986 - - - - - - 0.986 - - - peroxiredoxin 6 [Source:NCBI gene;Acc:429062]
29. FAM103A1 17380 0.982 - - - - - - 0.982 - - - family with sequence similarity 103 member A1, transcript variant X2
30. FBN3 ENSGALG00000037625 23313 0.982 - - - - - - 0.982 - - - fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
31. SMC2 ENSGALG00000015691 34013 0.981 - - - - - - 0.981 - - - structural maintenance of chromosomes 2 [Source:NCBI gene;Acc:396156]
32. ATP5MC1 ENSGALG00000001330 37766 0.981 - - - - - - 0.981 - - - ATP synthase membrane subunit c locus 1 [Source:HGNC Symbol;Acc:HGNC:841]
33. DYNLL2 ENSGALG00000005522 17107 0.981 - - - - - - 0.981 - - - dynein light chain LC8-type 2 [Source:NCBI gene;Acc:417663]
34. DENR ENSGALG00000003795 30805 0.971 - - - - - - 0.971 - - - density regulated re-initiation and release factor [Source:NCBI gene;Acc:771794]
35. ALDH1A2 ENSGALG00000004270 49483 0.94 - - - - - - 0.940 - - - aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
36. CALM_1 CALM_1 57812 0.928 - - - - - - 0.928 - - -
37. ATP2A2 ENSGALG00000032287 12734 0.914 - - - - - - 0.914 - - - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 [Source:NCBI gene;Acc:396446]
38. UQCRFS1 ENSGALG00000025819 66637 0.892 - - - - - - 0.892 - - - ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 [Source:NCBI gene;Acc:415752]
39. PARVB ENSGALG00000014201 27559 0.847 - - - - - - 0.847 - - - parvin beta [Source:HGNC Symbol;Acc:HGNC:14653]
40. PRNP ENSGALG00000000209 2159 0.831 - - - - - - - 0.831 - - prion protein [Source:NCBI gene;Acc:396452]
41. POLR2E ENSGALG00000002591 26405 0.818 - - - - - - 0.818 - - - RNA polymerase II subunit E [Source:HGNC Symbol;Acc:HGNC:9192]
42. CHERP ENSGALG00000003824 11489 0.818 - - - - - - 0.818 - - - calcium homeostasis endoplasmic reticulum protein [Source:NCBI gene;Acc:420144]
43. GM2A ENSGALG00000027534 3141 0.808 - - - - - - - 0.808 - - GM2 ganglioside activator [Source:HGNC Symbol;Acc:HGNC:4367]
44. OSBPL8 ENSGALG00000010246 4565 0.805 - - - - - - - 0.805 - - oxysterol binding protein like 8 [Source:HGNC Symbol;Acc:HGNC:16396]
45. LXR LXR 2599 0.795 - - - - - - - 0.795 - -
46. GXYLT1 ENSGALG00000009532 5682 0.793 - - - - - - - 0.793 - - glucoside xylosyltransferase 1 [Source:NCBI gene;Acc:417789]
47. TRDMT1 ENSGALG00000008686 2663 0.788 - - - - - - - 0.788 - - tRNA aspartic acid methyltransferase 1 [Source:NCBI gene;Acc:420520]
48. PITPNM1 ENSGALG00000034939 1031 0.786 - - - - - - - 0.786 - - phosphatidylinositol transfer protein membrane associated 1 [Source:HGNC Symbol;Acc:HGNC:9003]
49. ZFR ENSGALG00000003235 8466 0.782 - - 0.782 - - - - - - - zinc finger RNA binding protein, transcript variant X3
50. LETM1 ENSGALG00000015706 2366 0.781 - - - - - - - 0.781 - - leucine zipper and EF-hand containing transmembrane protein 1 [Source:NCBI gene;Acc:422898]
51. PROS1 ENSGALG00000015409 3685 0.78 - - - - - - - 0.780 - - protein S [Source:HGNC Symbol;Acc:HGNC:9456]
52. PCBD2 ENSGALG00000006367 5364 0.779 - - - - - - - 0.779 - - pterin-4 alpha-carbinolamine dehydratase 2 [Source:NCBI gene;Acc:374030]
53. ENSGALG00000001966 ENSGALG00000001966 1528 0.777 - - - - - - - 0.777 - -
54. DERA ENSGALG00000013095 4135 0.774 - - - - - - - 0.774 - - deoxyribose-phosphate aldolase [Source:NCBI gene;Acc:418176]
55. MGST3 ENSGALG00000003445 50408 0.773 - - - - - - 0.773 - - - microsomal glutathione S-transferase 3 [Source:NCBI gene;Acc:424404]
56. KLB ENSGALG00000041663 69 0.77 - - - 0.770 - - - - - - klotho beta [Source:HGNC Symbol;Acc:HGNC:15527]
57. ARPC1B ENSGALG00000032588 2407 0.77 - - - - - - - 0.770 - - actin related protein 2/3 complex subunit 1B [Source:NCBI gene;Acc:416490]
58. LZIC ENSGALG00000002616 9052 0.77 - - - - - - 0.770 - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
59. RARRES1 ENSGALG00000009594 3573 0.767 - - - - - - - 0.767 - - retinoic acid receptor responder 1 [Source:NCBI gene;Acc:395209]
60. GLIPR2 ENSGALG00000028821 5791 0.767 - - - - - - - 0.767 - - GLI pathogenesis related 2, transcript variant X2
61. EPB41L1 ENSGALG00000034171 3616 0.765 - - - - - - - 0.765 - - erythrocyte membrane protein band 4.1 like 1 [Source:HGNC Symbol;Acc:HGNC:3378]
62. ATG12 ENSGALG00000002345 3607 0.763 - - 0.763 - - - - - - - autophagy related 12 [Source:HGNC Symbol;Acc:HGNC:588]
63. MAD2L2 ENSGALG00000004640 3971 0.762 - - 0.762 - - - - - - - MAD2 mitotic arrest deficient-like 2 (yeast) [Source:NCBI gene;Acc:419493]
64. TNKS1BP1 5193 0.762 - - - - - - - 0.762 - - tankyrase 1 binding protein 1, transcript variant X7
65. gga-mir-6599 ENSGALG00000028121 4746 0.761 - - - - - - - 0.761 - - gga-mir-6599 [Source:miRBase;Acc:MI0022544]
66. LGALS2 ENSGALG00000003213 1089 0.76 - - - 0.760 - - - - - - galectin 2, transcript variant X2
67. HIRA ENSGALG00000033598 296 0.759 - - 0.759 - - - - - - - histone cell cycle regulator [Source:NCBI gene;Acc:374074]
68. GSKIP ENSGALG00000011088 3421 0.758 - - - - - - - 0.758 - - GSK3B interacting protein [Source:NCBI gene;Acc:423442]
69. FBN1 ENSGALG00000004960 2130 0.758 - - - - - - - 0.758 - - fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]
70. SFXN4 ENSGALG00000009350 3899 0.757 - - - - - - - 0.757 - - sideroflexin 4 [Source:HGNC Symbol;Acc:HGNC:16088]
71. MFI2 MFI2 1172 0.757 - - - - - - - 0.757 - -
72. PIGC ENSGALG00000027608 2132 0.756 - - - - - - - 0.756 - - phosphatidylinositol glycan anchor biosynthesis class C [Source:HGNC Symbol;Acc:HGNC:8960]
73. MAU2 ENSGALG00000002969 10604 0.756 - - - - - - 0.756 - - - MAU2 sister chromatid cohesion factor [Source:HGNC Symbol;Acc:HGNC:29140]
74. MICAL1 ENSGALG00000032190 134 0.754 - - 0.754 - - - - - - - microtubule associated monooxygenase, calponin and LIM domain containing 1 [Source:NCBI gene;Acc:429474]
75. DAB1 ENSGALG00000010857 1085 0.754 - - - - 0.754 - - - - - DAB1, reelin adaptor protein [Source:NCBI gene;Acc:374083]
76. TAB1 ENSGALG00000012150 4864 0.752 - - - - - - - 0.752 - - TGF-beta activated kinase 1 (MAP3K7) binding protein 1 [Source:NCBI gene;Acc:418014]
77. RALGDS ENSGALG00000003412 4478 0.75 - - - - - - - 0.750 - - ral guanine nucleotide dissociation stimulator, transcript variant X10
78. SUN1 ENSGALG00000003781 3442 0.75 - - 0.750 - - - - - - - Sad1 and UNC84 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18587]
79. MRPL17 ENSGALG00000002605 46508 0.749 - - - - - - 0.749 - - - mitochondrial ribosomal protein L17 [Source:HGNC Symbol;Acc:HGNC:14053]
80. ACP6 ENSGALG00000015485 3147 0.748 - - - - 0.748 - - - - - acid phosphatase 6, lysophosphatidic [Source:NCBI gene;Acc:418458]
81. IFITM3 ENSGALG00000026970 4738 0.748 - - - - - - - 0.748 - - Gallus gallus interferon-induced transmembrane protein 3 (IFITM3), mRNA. [Source:RefSeq mRNA;Acc:NM_001350061]
82. TNFAIP8 ENSGALG00000027761 2383 0.747 - - - - - - - 0.747 - - TNF alpha induced protein 8 [Source:NCBI gene;Acc:427384]
83. AASDHPPT ENSGALG00000027981 1017 0.747 - - - - 0.747 - - - - - aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase [Source:NCBI gene;Acc:418975]
84. SPATA2 ENSGALG00000008026 2040 0.746 - - - - 0.746 - - - - - spermatogenesis associated 2 [Source:NCBI gene;Acc:419355]
85. ENSGALG00000008755 ENSGALG00000008755 3523 0.745 - - - - - - - 0.745 - -
86. NTPCR ENSGALG00000011015 8652 0.744 - - - - - - - 0.744 - - nucleoside-triphosphatase, cancer-related [Source:NCBI gene;Acc:428588]
87. LRRC40 ENSGALG00000011301 3409 0.744 - - - - - - - 0.744 - - leucine rich repeat containing 40 [Source:NCBI gene;Acc:424713]
88. PBRM1 ENSGALG00000037455 6450 0.744 - - - - - - - 0.744 - - polybromo 1 [Source:NCBI gene;Acc:396074]
89. ABCD2 ENSGALG00000042554 1607 0.743 - - - - - - - 0.743 - - ATP binding cassette subfamily D member 2 [Source:NCBI gene;Acc:417694]
90. NMB ENSGALG00000043506 1387 0.743 - - - - 0.743 - - - - - neuromedin B [Source:NCBI gene;Acc:415333]
91. MORN4 ENSGALG00000006149 7772 0.743 - - - - - - - 0.743 - - MORN repeat containing 4 [Source:NCBI gene;Acc:425290]
92. FNDC3B ENSGALG00000009222 4689 0.743 - - - - - - - 0.743 - - fibronectin type III domain containing 3B [Source:NCBI gene;Acc:424984]
93. CANT1 ENSGALG00000011822 2218 0.742 - - - - 0.742 - - - - - calcium activated nucleotidase 1 [Source:NCBI gene;Acc:430103]
94. PANX2 ENSGALG00000000003 2185 0.741 - - - - - - - 0.741 - - pannexin 2 [Source:HGNC Symbol;Acc:HGNC:8600]
95. RAB21 ENSGALG00000010183 7718 0.741 - - - - - - - 0.741 - - RAB21, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18263]
96. PSMD13 ENSGALG00000043684 14720 0.74 - - - - - - - 0.740 - - proteasome 26S subunit, non-ATPase 13 [Source:HGNC Symbol;Acc:HGNC:9558]
97. SPPL3 ENSGALG00000006979 3264 0.74 - - - - - - - 0.740 - - signal peptide peptidase like 3 [Source:HGNC Symbol;Acc:HGNC:30424]
98. SYNPR ENSGALG00000007284 1368 0.74 - - - - 0.740 - - - - - synaptoporin [Source:NCBI gene;Acc:396359]
99. UPK3BL ENSGALG00000001885 1650 0.739 - - - - - - - - - 0.739 uroplakin 3B-like
100. TMEM38B ENSGALG00000027472 2465 0.739 - - - - - - - 0.739 - - transmembrane protein 38B [Source:HGNC Symbol;Acc:HGNC:25535]

There are 106 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA