Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PDLIM7

Gene Name Gene ID Reads Annotation
PDLIM7 ENSGALG00000026159 4700 PDZ and LIM domain 7 [Source:NCBI gene;Acc:416362]











Genes with expression patterns similar to PDLIM7

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PDLIM7 ENSGALG00000026159 4700 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 PDZ and LIM domain 7 [Source:NCBI gene;Acc:416362]
2. HYAL1 ENSGALG00000000785 1778 1.686 - - 0.824 - - - - 0.862 - - hyaluronoglucosaminidase 1, transcript variant X3
3. AGGF1 ENSGALG00000004311 3011 1.628 - - 0.834 - - - - 0.794 - - angiogenic factor with G-patch and FHA domains 1, transcript variant X1
4. VPS13D ENSGALG00000034777 2350 1.547 - - 0.747 - - - - 0.800 - - vacuolar protein sorting 13 homolog D [Source:HGNC Symbol;Acc:HGNC:23595]
5. TCTN2 ENSGALG00000023683 3596 1.537 - - 0.783 - - - - 0.754 - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
6. PCYOX1 ENSGALG00000013878 2200 1.516 - - 0.749 - - - - 0.767 - - prenylcysteine oxidase 1 [Source:HGNC Symbol;Acc:HGNC:20588]
7. CENPO ENSGALG00000016609 1699 1.514 - - 0.750 - - - 0.764 - - - centromere protein O [Source:NCBI gene;Acc:422014]
8. UBN1 ENSGALG00000031416 2848 1.507 - - 0.747 - - - - 0.760 - - ubinuclein 1 [Source:NCBI gene;Acc:416398]
9. UBE2R2 ENSGALG00000001668 9234 1.491 - - 0.746 - - - - - 0.745 - ubiquitin conjugating enzyme E2 R2 [Source:NCBI gene;Acc:427021]
10. ISCU ENSGALG00000004869 6852 1.483 - - - - - - 0.735 0.748 - - iron-sulfur cluster assembly enzyme [Source:HGNC Symbol;Acc:HGNC:29882]
11. LGR4 ENSGALG00000040834 5529 1.455 - - 0.751 - - - 0.704 - - - leucine rich repeat containing G protein-coupled receptor 4 [Source:HGNC Symbol;Acc:HGNC:13299]
12. ASH2L ENSGALG00000003233 4814 1.435 - - 0.732 - - - 0.703 - - - ASH2 like, histone lysine methyltransferase complex subunit [Source:NCBI gene;Acc:426774]
13. TAF5 ENSGALG00000008241 5227 1.429 - - 0.724 - - - - 0.705 - - TATA-box binding protein associated factor 5 [Source:NCBI gene;Acc:423872]
14. NT5C3B ENSGALG00000003651 5190 1.424 - - 0.718 - - - - 0.706 - - 5'-nucleotidase, cytosolic IIIB [Source:NCBI gene;Acc:420034]
15. GNG12 ENSGALG00000026591 5817 0.891 - - - - - - - 0.891 - - G protein subunit gamma 12, transcript variant X21
16. TTC8 ENSGALG00000010663 1556 0.872 - - - - - - - 0.872 - - tetratricopeptide repeat domain 8 [Source:HGNC Symbol;Acc:HGNC:20087]
17. MBNL1 ENSGALG00000029190 3953 0.866 - - 0.866 - - - - - - - muscleblind like splicing regulator 1 [Source:NCBI gene;Acc:425033]
18. DPYSL3 ENSGALG00000007582 7743 0.865 - - - - - - - 0.865 - - dihydropyrimidinase like 3 [Source:NCBI gene;Acc:395154]
19. FBXO7 ENSGALG00000012569 4124 0.863 - - - - - - - 0.863 - - F-box protein 7 [Source:NCBI gene;Acc:418063]
20. C9H21ORF2 C9H21ORF2 3161 0.858 - - - - - - - 0.858 - -
21. PTX3 ENSGALG00000028284 2984 0.854 - - - - - - - 0.854 - - pentraxin 3 [Source:NCBI gene;Acc:548626]
22. CRTAP ENSGALG00000034163 6453 0.854 - - - - - - - 0.854 - - cartilage associated protein [Source:NCBI gene;Acc:395992]
23. XRCC6 ENSGALG00000011932 2302 0.853 - - 0.853 - - - - - - - X-ray repair complementing defective repair in Chinese hamster cells 6 [Source:NCBI gene;Acc:395767]
24. TRMT6 ENSGALG00000009169 1431 0.851 - - 0.851 - - - - - - - tRNA methyltransferase 6 [Source:NCBI gene;Acc:421313]
25. ITPK1 ENSGALG00000034898 4212 0.849 - - - - - - - 0.849 - - inositol-tetrakisphosphate 1-kinase [Source:NCBI gene;Acc:423421]
26. LBP ENSGALG00000006756 1684 0.848 - - - - - - - 0.848 - - lipopolysaccharide binding protein, transcript variant X1
27. ITFG2 ENSGALG00000014335 1896 0.846 - - - - - - - 0.846 - - integrin alpha FG-GAP repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:30879]
28. UPF1 ENSGALG00000003220 9496 0.84 - - - - - - - 0.840 - - UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]
29. CLMP ENSGALG00000006507 8079 0.839 - - - - - - - 0.839 - - CXADR like membrane protein [Source:HGNC Symbol;Acc:HGNC:24039]
30. TAF1A ENSGALG00000009441 2431 0.836 - - - - - - - 0.836 - - TATA-box binding protein associated factor, RNA polymerase I subunit A [Source:NCBI gene;Acc:421338]
31. UBE2E3 ENSGALG00000020793 9517 0.832 - - 0.832 - - - - - - - ubiquitin conjugating enzyme E2 E3 [Source:NCBI gene;Acc:424122]
32. RNH1 ENSGALG00000006904 14542 0.832 - - - - - - - 0.832 - - ribonuclease/angiogenin inhibitor 1 [Source:NCBI gene;Acc:423111]
33. DECR1 ENSGALG00000036990 6360 0.832 - - - - - - - 0.832 - - 2,4-dienoyl-CoA reductase 1 [Source:HGNC Symbol;Acc:HGNC:2753]
34. MMP15 ENSGALG00000038758 49988 0.831 - - - - - - - 0.831 - - matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
35. METTL5 ENSGALG00000009676 3252 0.831 - - 0.831 - - - - - - - methyltransferase like 5 [Source:HGNC Symbol;Acc:HGNC:25006]
36. DHODH ENSGALG00000000802 3226 0.829 - - - - - - - 0.829 - - dihydroorotate dehydrogenase (quinone) [Source:NCBI gene;Acc:415876]
37. HUNK ENSGALG00000015879 7227 0.828 - - 0.828 - - - - - - - hormonally up-regulated Neu-associated kinase [Source:HGNC Symbol;Acc:HGNC:13326]
38. MYOCD ENSGALG00000001021 351 0.828 - - - - - - - 0.828 - - myocardin [Source:NCBI gene;Acc:427790]
39. EDN1 ENSGALG00000012735 654 0.826 - - - - - - - 0.826 - - endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]
40. STOML2 STOML2 15566 0.824 - - - - - - - 0.824 - -
41. PDLIM5 ENSGALG00000012211 3064 0.824 - - - - - - - 0.824 - - PDZ and LIM domain 5 [Source:NCBI gene;Acc:422699]
42. SNX12 ENSGALG00000005659 9503 0.822 - - - - - - - 0.822 - - sorting nexin 12 [Source:NCBI gene;Acc:428704]
43. CREBL2 ENSGALG00000037030 1247 0.822 - - - - - - - 0.822 - - cAMP responsive element binding protein like 2 [Source:NCBI gene;Acc:426496]
44. AGRN ENSGALG00000039193 8135 0.82 - - - - - - - 0.820 - - agrin [Source:NCBI gene;Acc:396538]
45. TNFRSF1B ENSGALG00000034213 780 0.819 - - - - - - - 0.819 - - TNF receptor superfamily member 1B [Source:NCBI gene;Acc:395083]
46. ERMARD ENSGALG00000011186 1001 0.816 - - - - - - - 0.816 - - ER membrane associated RNA degradation [Source:HGNC Symbol;Acc:HGNC:21056]
47. SLC39A6 ENSGALG00000013209 1754 0.816 - - 0.816 - - - - - - - solute carrier family 39 member 6 [Source:HGNC Symbol;Acc:HGNC:18607]
48. BRT-1 BRT-1 26083 0.816 - - - - - - - 0.816 - -
49. COL6A3 ENSGALG00000003923 3400 0.816 - - - - - - - 0.816 - - collagen type VI alpha 3 chain [Source:NCBI gene;Acc:396548]
50. GGA.1330 GGA.1330 11281 0.815 - - - - - - - - - 0.815
51. MBSP MBSP 5634 0.815 - - 0.815 - - - - - - -
52. FAR-1 FAR-1 1855 0.815 - - 0.815 - - - - - - -
53. FGFR3 ENSGALG00000015708 16853 0.814 - - - - - - - 0.814 - - fibroblast growth factor receptor 3 [Source:NCBI gene;Acc:396515]
54. SHROOM2 ENSGALG00000030802 4517 0.814 - - 0.814 - - - - - - - shroom family member 2 [Source:HGNC Symbol;Acc:HGNC:630]
55. TMEM57 ENSGALG00000001067 3367 0.814 - - 0.814 - - - - - - - transmembrane protein 57 [Source:NCBI gene;Acc:419590]
56. BUD13_1 ENSGALG00000025882 1118 0.813 - - - - - - - 0.813 - - BUD13 homolog [Source:NCBI gene;Acc:428248]
57. NDOR1 ENSGALG00000008920 2342 0.813 - - 0.813 - - - - - - - NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
58. NR2F2 ENSGALG00000007000 4911 0.812 - - 0.812 - - - - - - - nuclear receptor subfamily 2 group F member 2 [Source:NCBI gene;Acc:386585]
59. MAN2C1 ENSGALG00000001615 2362 0.81 - - 0.810 - - - - - - - mannosidase alpha class 2C member 1 [Source:NCBI gene;Acc:415306]
60. UBE2H ENSGALG00000031975 12964 0.808 - - - - - - - 0.808 - - ubiquitin conjugating enzyme E2 H [Source:NCBI gene;Acc:416678]
61. ATRIP ENSGALG00000004670 3647 0.808 - - 0.808 - - - - - - - ATR interacting protein [Source:NCBI gene;Acc:415949]
62. ATP6V1E1 ENSGALG00000013036 13497 0.808 - - 0.808 - - - - - - - ATPase H+ transporting V1 subunit E1 [Source:NCBI gene;Acc:418162]
63. IGDCC4 ENSGALG00000007410 5457 0.807 - - - - - - - 0.807 - - immunoglobulin superfamily DCC subclass member 4 [Source:HGNC Symbol;Acc:HGNC:13770]
64. MXD4 ENSGALG00000015688 1472 0.806 - - - - - - - 0.806 - - MAX dimerization protein 4 [Source:NCBI gene;Acc:422890]
65. FBXL8 ENSGALG00000003201 847 0.806 - - - - - - - 0.806 - - F-box and leucine rich repeat protein 8 [Source:NCBI gene;Acc:415701]
66. MED15 ENSGALG00000006430 814 0.805 - - 0.805 - - - - - - - mediator complex subunit 15 [Source:HGNC Symbol;Acc:HGNC:14248]
67. TIMMDC1 ENSGALG00000024480 9337 0.804 - - 0.804 - - - - - - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
68. CPT2 ENSGALG00000010681 3211 0.803 - - - - - - - 0.803 - - carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
69. RCAN3 ENSGALG00000004282 7778 0.803 - - - - - - - 0.803 - - RCAN family member 3 [Source:NCBI gene;Acc:419698]
70. PFDN4 ENSGALG00000007792 26514 0.802 - - 0.802 - - - - - - - prefoldin subunit 4 [Source:NCBI gene;Acc:419337]
71. IGBP1 ENSGALG00000044628 9200 0.802 - - - - - - - 0.802 - - immunoglobulin (CD79A) binding protein 1, transcript variant X3
72. PANK1 ENSGALG00000006431 2910 0.802 - - 0.802 - - - - - - - pantothenate kinase 1 [Source:HGNC Symbol;Acc:HGNC:8598]
73. CHAMP1 ENSGALG00000016813 508 0.802 - - 0.802 - - - - - - - chromosome alignment maintaining phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:20311]
74. AIP ENSGALG00000040247 4166 0.801 - - - - - - - 0.801 - - aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
75. SNX14 ENSGALG00000015831 2554 0.799 - - 0.799 - - - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
76. SRF ENSGALG00000032029 6983 0.798 - - - - - - - 0.798 - - serum response factor [Source:NCBI gene;Acc:396103]
77. ATP10D ENSGALG00000014192 94 0.797 - - 0.797 - - - - - - - ATPase phospholipid transporting 10D (putative) [Source:HGNC Symbol;Acc:HGNC:13549]
78. AMBRA1 ENSGALG00000008358 2865 0.797 - - 0.797 - - - - - - - autophagy and beclin 1 regulator 1 [Source:HGNC Symbol;Acc:HGNC:25990]
79. ATF7IP ENSGALG00000011814 1571 0.797 - - 0.797 - - - - - - - activating transcription factor 7 interacting protein [Source:NCBI gene;Acc:417966]
80. PRPF38B ENSGALG00000001972 2009 0.797 - - 0.797 - - - - - - - pre-mRNA processing factor 38B
81. RNF185 ENSGALG00000006960 5428 0.796 - - - - - - - 0.796 - - ring finger protein 185 [Source:NCBI gene;Acc:416965]
82. RALGDS ENSGALG00000003412 4478 0.795 - - 0.795 - - - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
83. MYCBP2 ENSGALG00000016915 2374 0.795 - - 0.795 - - - - - - - MYC binding protein 2, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:23386]
84. FBXO45 ENSGALG00000037281 3936 0.795 - - 0.795 - - - - - - - F-box protein 45 [Source:HGNC Symbol;Acc:HGNC:29148]
85. SH3TC1 ENSGALG00000015568 484 0.795 - - - - - - - 0.795 - - SH3 domain and tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:26009]
86. ASNSD1 ENSGALG00000041666 3757 0.795 - - - - - - - 0.795 - - asparagine synthetase domain containing 1 [Source:NCBI gene;Acc:423983]
87. NEK1 ENSGALG00000009683 4305 0.794 - - 0.794 - - - - - - - NIMA related kinase 1 [Source:HGNC Symbol;Acc:HGNC:7744]
88. ITM2B ENSGALG00000016996 1112 0.794 - - 0.794 - - - - - - - integral membrane protein 2B [Source:NCBI gene;Acc:395969]
89. SP3 ENSGALG00000031796 8997 0.794 - - 0.794 - - - - - - - Sp3 transcription factor [Source:NCBI gene;Acc:395302]
90. C18orf8 C18orf8 1512 0.793 - - 0.793 - - - - - - -
91. LIFR ENSGALG00000003733 4391 0.792 - - - - - - - 0.792 - - leukemia inhibitory factor receptor alpha [Source:NCBI gene;Acc:395262]
92. PDIA5 ENSGALG00000011689 6913 0.791 - - 0.791 - - - - - - - protein disulfide isomerase family A member 5 [Source:HGNC Symbol;Acc:HGNC:24811]
93. TMEM242 ENSGALG00000013689 377 0.791 - - 0.791 - - - - - - - transmembrane protein 242 [Source:HGNC Symbol;Acc:HGNC:17206]
94. HCFC2 ENSGALG00000029616 4525 0.791 - - 0.791 - - - - - - - host cell factor C2 [Source:HGNC Symbol;Acc:HGNC:24972]
95. SMARCAD1 ENSGALG00000037339 149 0.79 - - 0.790 - - - - - - - SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 [Source:HGNC Symbol;Acc:HGNC:18398]
96. PHLDB2 ENSGALG00000015377 8560 0.79 - - - - - - - 0.790 - - pleckstrin homology like domain family B member 2 [Source:HGNC Symbol;Acc:HGNC:29573]
97. UBR4 ENSGALG00000030563 5225 0.79 - - - - - - - 0.790 - - ubiquitin protein ligase E3 component n-recognin 4 [Source:HGNC Symbol;Acc:HGNC:30313]
98. RECQL ENSGALG00000013174 1323 0.79 - - 0.790 - - - - - - - RecQ like helicase [Source:NCBI gene;Acc:378910]
99. MNT ENSGALG00000005830 1908 0.789 - - - - - - 0.789 - - - MAX network transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:7188]
100. TRIM13 ENSGALG00000017011 92 0.788 - - 0.788 - - - - - - - tripartite motif containing 13 [Source:HGNC Symbol;Acc:HGNC:9976]

There are 402 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA