Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PDLIM5

Gene Name Gene ID Reads Annotation
PDLIM5 ENSGALG00000012211 3064 PDZ and LIM domain 5 [Source:NCBI gene;Acc:422699]











Genes with expression patterns similar to PDLIM5

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PDLIM5 ENSGALG00000012211 3064 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 PDZ and LIM domain 5 [Source:NCBI gene;Acc:422699]
2. ITFG2 ENSGALG00000014335 1896 0.92 - - - - - - - 0.920 - - integrin alpha FG-GAP repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:30879]
3. RCAN3 ENSGALG00000004282 7778 0.913 - - - - - - - 0.913 - - RCAN family member 3 [Source:NCBI gene;Acc:419698]
4. GNG12 ENSGALG00000026591 5817 0.912 - - - - - - - 0.912 - - G protein subunit gamma 12, transcript variant X21
5. TAF1A ENSGALG00000009441 2431 0.911 - - - - - - - 0.911 - - TATA-box binding protein associated factor, RNA polymerase I subunit A [Source:NCBI gene;Acc:421338]
6. GLT8D1 ENSGALG00000001642 4232 0.908 - - - - - - - 0.908 - - glycosyltransferase 8 domain containing 1 [Source:NCBI gene;Acc:415898]
7. ARID2 ENSGALG00000033074 3461 0.904 - - - - - - - 0.904 - - AT-rich interaction domain 2 [Source:HGNC Symbol;Acc:HGNC:18037]
8. SNX12 ENSGALG00000005659 9503 0.901 - - - - - - - 0.901 - - sorting nexin 12 [Source:NCBI gene;Acc:428704]
9. CREPT CREPT 17142 0.89 - - - - - - - 0.890 - -
10. C9orf64 ENSGALG00000012589 6097 0.889 - - - - - - - 0.889 - - chromosome 9 open reading frame 64 [Source:HGNC Symbol;Acc:HGNC:28144]
11. PTPN4 3030 0.887 - - - - - - - 0.887 - - protein tyrosine phosphatase, non-receptor type 4, transcript variant X2
12. FBXO7 ENSGALG00000012569 4124 0.884 - - - - - - - 0.884 - - F-box protein 7 [Source:NCBI gene;Acc:418063]
13. CLMP ENSGALG00000006507 8079 0.881 - - - - - - - 0.881 - - CXADR like membrane protein [Source:HGNC Symbol;Acc:HGNC:24039]
14. DHODH ENSGALG00000000802 3226 0.881 - - - - - - - 0.881 - - dihydroorotate dehydrogenase (quinone) [Source:NCBI gene;Acc:415876]
15. AIP ENSGALG00000040247 4166 0.878 - - - - - - - 0.878 - - aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
16. STOML2 STOML2 15566 0.878 - - - - - - - 0.878 - -
17. PCYOX1 ENSGALG00000013878 2200 0.876 - - - - - - - 0.876 - - prenylcysteine oxidase 1 [Source:HGNC Symbol;Acc:HGNC:20588]
18. CRTAP ENSGALG00000034163 6453 0.874 - - - - - - - 0.874 - - cartilage associated protein [Source:NCBI gene;Acc:395992]
19. POLR1B ENSGALG00000032273 3845 0.873 - - - - - - - 0.873 - - RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454]
20. ZNF384 ENSGALG00000032599 2369 0.87 - - - - - - - 0.870 - - zinc finger protein 384 [Source:NCBI gene;Acc:770350]
21. LIMS1 ENSGALG00000029970 7244 0.868 - - - - - - - 0.868 - - LIM zinc finger domain containing 1 [Source:NCBI gene;Acc:414880]
22. BRCA1 ENSGALG00000002781 2052 0.868 - - - - - - - 0.868 - - BRCA1, DNA repair associated [Source:NCBI gene;Acc:373983]
23. CREBL2 ENSGALG00000037030 1247 0.868 - - - - - - - 0.868 - - cAMP responsive element binding protein like 2 [Source:NCBI gene;Acc:426496]
24. HYAL1 ENSGALG00000000785 1778 0.868 - - - - - - - 0.868 - - hyaluronoglucosaminidase 1, transcript variant X3
25. BUD13_1 ENSGALG00000025882 1118 0.868 - - - - - - - 0.868 - - BUD13 homolog [Source:NCBI gene;Acc:428248]
26. AGRN ENSGALG00000039193 8135 0.868 - - - - - - - 0.868 - - agrin [Source:NCBI gene;Acc:396538]
27. GTPBP4 ENSGALG00000006703 16183 0.867 - - - - - - - 0.867 - - GTP binding protein 4 [Source:NCBI gene;Acc:420458]
28. MTIF2 ENSGALG00000031265 2366 0.866 - - - - - - - 0.866 - - mitochondrial translational initiation factor 2 [Source:NCBI gene;Acc:421213]
29. ASNSD1 ENSGALG00000041666 3757 0.864 - - - - - - - 0.864 - - asparagine synthetase domain containing 1 [Source:NCBI gene;Acc:423983]
30. FBXL8 ENSGALG00000003201 847 0.864 - - - - - - - 0.864 - - F-box and leucine rich repeat protein 8 [Source:NCBI gene;Acc:415701]
31. RNH1 ENSGALG00000006904 14542 0.864 - - - - - - - 0.864 - - ribonuclease/angiogenin inhibitor 1 [Source:NCBI gene;Acc:423111]
32. PPP2R3A ENSGALG00000034512 1091 0.863 - - - - - - - 0.863 - - protein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]
33. CUX1_1 ENSGALG00000021636 3705 0.861 - - - - - - - 0.861 - - cut like homeobox 1 [Source:NCBI gene;Acc:101749861]
34. PTPRK ENSGALG00000037423 3688 0.861 - - - - - - - 0.861 - - protein tyrosine phosphatase, receptor type K [Source:HGNC Symbol;Acc:HGNC:9674]
35. KIF21B ENSGALG00000034347 4144 0.86 - - - - - - - 0.860 - - kinesin family member 21B [Source:HGNC Symbol;Acc:HGNC:29442]
36. LRPAP1 ENSGALG00000015612 3526 0.859 - - - - - - - 0.859 - - LDL receptor related protein associated protein 1 [Source:NCBI gene;Acc:395936]
37. NUDT6 ENSGALG00000011834 1309 0.859 - - - - - - - 0.859 - - nudix hydrolase 6 [Source:HGNC Symbol;Acc:HGNC:8053]
38. USP28 ENSGALG00000006969 2645 0.858 - - - - - - - 0.858 - - ubiquitin specific peptidase 28 [Source:NCBI gene;Acc:428246]
39. ERMARD ENSGALG00000011186 1001 0.857 - - - - - - - 0.857 - - ER membrane associated RNA degradation [Source:HGNC Symbol;Acc:HGNC:21056]
40. AGGF1 ENSGALG00000004311 3011 0.857 - - - - - - - 0.857 - - angiogenic factor with G-patch and FHA domains 1, transcript variant X1
41. LRIG3 ENSGALG00000009755 6655 0.856 - - - - - - - 0.856 - - leucine rich repeats and immunoglobulin like domains 3 [Source:NCBI gene;Acc:417813]
42. UPF1 ENSGALG00000003220 9496 0.856 - - - - - - - 0.856 - - UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]
43. MMP15 ENSGALG00000038758 49988 0.855 - - - - - - - 0.855 - - matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
44. G2E3 ENSGALG00000009907 1754 0.855 - - - - - - - 0.855 - - G2/M-phase specific E3 ubiquitin protein ligase [Source:NCBI gene;Acc:423305]
45. NCAPH ENSGALG00000032270 2103 0.855 - - - - - - - 0.855 - - non-SMC condensin I complex subunit H [Source:NCBI gene;Acc:425304]
46. PDZD8 ENSGALG00000029095 1068 0.853 - - - - - - - 0.853 - - PDZ domain containing 8 [Source:HGNC Symbol;Acc:HGNC:26974]
47. NT5C3B ENSGALG00000003651 5190 0.853 - - - - - - - 0.853 - - 5'-nucleotidase, cytosolic IIIB [Source:NCBI gene;Acc:420034]
48. IBTK ENSGALG00000015864 3154 0.852 - - - - - - - 0.852 - - inhibitor of Bruton tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:17853]
49. ATP1B3 ENSGALG00000002764 1890 0.852 - - - - - - - 0.852 - - ATPase Na+/K+ transporting subunit beta 3 [Source:NCBI gene;Acc:396549]
50. VPS13D ENSGALG00000034777 2350 0.851 - - - - - - - 0.851 - - vacuolar protein sorting 13 homolog D [Source:HGNC Symbol;Acc:HGNC:23595]
51. MED27 ENSGALG00000003683 6808 0.85 - - - - - - - 0.850 - - mediator complex subunit 27 [Source:NCBI gene;Acc:417172]
52. TMEM161A ENSGALG00000025809 2813 0.85 - - - - - - - 0.850 - - transmembrane protein 161A [Source:HGNC Symbol;Acc:HGNC:26020]
53. BACE2 ENSGALG00000034932 1570 0.848 - - - - - - - 0.848 - - beta-secretase 2 [Source:HGNC Symbol;Acc:HGNC:934]
54. TXNDC11 ENSGALG00000003154 2224 0.848 - - - - - - - 0.848 - - thioredoxin domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28030]
55. CCDC53 CCDC53 3732 0.847 - - - - - - - 0.847 - -
56. TCTN2 ENSGALG00000023683 3596 0.847 - - - - - - - 0.847 - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
57. IRAK1BP1 ENSGALG00000015892 2236 0.847 - - - - - - - 0.847 - - interleukin 1 receptor associated kinase 1 binding protein 1 [Source:NCBI gene;Acc:421857]
58. RNF185 ENSGALG00000006960 5428 0.846 - - - - - - - 0.846 - - ring finger protein 185 [Source:NCBI gene;Acc:416965]
59. HOOK1 ENSGALG00000010889 1007 0.846 - - - - - - - 0.846 - - hook microtubule tethering protein 1 [Source:NCBI gene;Acc:424675]
60. CPT2 ENSGALG00000010681 3211 0.844 - - - - - - - 0.844 - - carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
61. DOK5 ENSGALG00000007786 1732 0.844 - - - - - - - 0.844 - - docking protein 5 [Source:HGNC Symbol;Acc:HGNC:16173]
62. PNN ENSGALG00000010167 6417 0.843 - - - - - - - 0.843 - - pinin, desmosome associated protein [Source:HGNC Symbol;Acc:HGNC:9162]
63. EFCAB10 ENSGALG00000045949 514 0.843 - - - - - - - 0.843 - - EF-hand calcium binding domain 10 [Source:HGNC Symbol;Acc:HGNC:34531]
64. BIVM ENSGALG00000016861 3987 0.843 - - - - - - - 0.843 - - basic, immunoglobulin-like variable motif containing [Source:NCBI gene;Acc:374099]
65. TTC38 ENSGALG00000014551 1135 0.843 - - - - - - - 0.843 - - tetratricopeptide repeat domain 38 [Source:HGNC Symbol;Acc:HGNC:26082]
66. PKDCC ENSGALG00000042511 3378 0.841 - - - - - - 0.841 - - - protein kinase domain containing, cytoplasmic [Source:HGNC Symbol;Acc:HGNC:25123]
67. HAGHL ENSGALG00000021040 1568 0.841 - - - - - - - 0.841 - - hydroxyacylglutathione hydrolase-like [Source:NCBI gene;Acc:416536]
68. SMG8 ENSGALG00000005093 5557 0.841 - - - - - - - 0.841 - - SMG8 nonsense mediated mRNA decay factor
69. LBP ENSGALG00000006756 1684 0.841 - - - - - - - 0.841 - - lipopolysaccharide binding protein, transcript variant X1
70. MTUS1 ENSGALG00000013615 1040 0.84 - - - - - - - 0.840 - - microtubule associated tumor suppressor 1, transcript variant X4
71. FBXL17 ENSGALG00000000276 2443 0.84 - - - - - - - 0.840 - - F-box and leucine rich repeat protein 17 [Source:HGNC Symbol;Acc:HGNC:13615]
72. EPGN ENSGALG00000010859 187 0.84 - - - - - - - 0.840 - - epithelial mitogen [Source:NCBI gene;Acc:497270]
73. MXD4 ENSGALG00000015688 1472 0.839 - - - - - - - 0.839 - - MAX dimerization protein 4 [Source:NCBI gene;Acc:422890]
74. LOC112529965 ENSGALG00000010758 5395 0.839 - - - - - - - 0.839 - - NADH-cytochrome b5 reductase-like
75. SELENBP1 ENSGALG00000000866 1253 0.839 - - - - - - - 0.839 - - selenium binding protein 1 [Source:NCBI gene;Acc:425664]
76. PDDC1 5179 0.838 - - - - - - - 0.838 - - Parkinson disease 7 domain containing 1, transcript variant X6
77. ACSS2 ENSGALG00000003362 3023 0.837 - - - - - - - 0.837 - - acyl-CoA synthetase short chain family member 2 [Source:HGNC Symbol;Acc:HGNC:15814]
78. NPAT ENSGALG00000017162 1574 0.837 - - - - - - - 0.837 - - nuclear protein, coactivator of histone transcription [Source:HGNC Symbol;Acc:HGNC:7896]
79. ISCU ENSGALG00000004869 6852 0.837 - - - - - - - 0.837 - - iron-sulfur cluster assembly enzyme [Source:HGNC Symbol;Acc:HGNC:29882]
80. SLC19A1 ENSGALG00000030511 1397 0.836 - - - - - - - 0.836 - - solute carrier family 19 member 1 [Source:NCBI gene;Acc:424034]
81. UBN1 ENSGALG00000031416 2848 0.836 - - - - - - - 0.836 - - ubinuclein 1 [Source:NCBI gene;Acc:416398]
82. BCAS3 ENSGALG00000005295 2595 0.835 - - - - - - - 0.835 - - BCAS3, microtubule associated cell migration factor [Source:HGNC Symbol;Acc:HGNC:14347]
83. TICAM1 ENSGALG00000026850 723 0.834 - - - - - - - 0.834 - - toll like receptor adaptor molecule 1 [Source:NCBI gene;Acc:100008585]
84. ALAS1 3660 0.834 - - - - - - - 0.834 - - 5'-aminolevulinate synthase 1, transcript variant X1
85. ZBTB18 ENSGALG00000010705 3433 0.834 - - - - - - - 0.834 - - zinc finger and BTB domain containing 18 [Source:HGNC Symbol;Acc:HGNC:13030]
86. ENSGALG00000021439 ENSGALG00000021439 628 0.834 - - - - - - - 0.834 - -
87. ACBD5 ENSGALG00000007519 1646 0.834 - - - - - - - 0.834 - - acyl-CoA binding domain containing 5 [Source:NCBI gene;Acc:420488]
88. ARNTL2 ENSGALG00000014096 998 0.833 - - - - - - - 0.833 - - aryl hydrocarbon receptor nuclear translocator-like 2 [Source:NCBI gene;Acc:373925]
89. UBR4 ENSGALG00000030563 5225 0.833 - - - - - - - 0.833 - - ubiquitin protein ligase E3 component n-recognin 4 [Source:HGNC Symbol;Acc:HGNC:30313]
90. SPATA2 ENSGALG00000008026 2040 0.831 - - - - - - - 0.831 - - spermatogenesis associated 2 [Source:NCBI gene;Acc:419355]
91. GKAP1 ENSGALG00000012586 2908 0.831 - - - - - - - 0.831 - - G kinase anchoring protein 1 [Source:HGNC Symbol;Acc:HGNC:17496]
92. FGFR1 ENSGALG00000039786 4480 0.831 - - - - - - - 0.831 - - fibroblast growth factor receptor 1 [Source:NCBI gene;Acc:396516]
93. IGDCC4 ENSGALG00000007410 5457 0.831 - - - - - - - 0.831 - - immunoglobulin superfamily DCC subclass member 4 [Source:HGNC Symbol;Acc:HGNC:13770]
94. DOCK10 ENSGALG00000005030 848 0.83 - - - - - - - 0.830 - - dedicator of cytokinesis 10 [Source:HGNC Symbol;Acc:HGNC:23479]
95. CCNL2 ENSGALG00000001551 2620 0.83 - - - - - - - 0.830 - - cyclin L2 [Source:NCBI gene;Acc:395124]
96. XRN1 ENSGALG00000002706 4014 0.829 - - - - - - - 0.829 - - 5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]
97. RASA3 ENSGALG00000016817 2146 0.829 - - - - - - - 0.829 - - RAS p21 protein activator 3 [Source:NCBI gene;Acc:418736]
98. EML1 1941 0.826 - - - - - - - 0.826 - - echinoderm microtubule associated protein like 1, transcript variant X11
99. PDE3B ENSGALG00000006035 3732 0.825 - - - - - - - 0.825 - - phosphodiesterase 3B [Source:NCBI gene;Acc:423064]
100. PDLIM7 ENSGALG00000026159 4700 0.824 - - - - - - - 0.824 - - PDZ and LIM domain 7 [Source:NCBI gene;Acc:416362]

There are 130 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA