Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PDLIM4

Gene Name Gene ID Reads Annotation
PDLIM4 ENSGALG00000039872 7823 PDZ and LIM domain 4 [Source:NCBI gene;Acc:395643]











Genes with expression patterns similar to PDLIM4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PDLIM4 ENSGALG00000039872 7823 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - PDZ and LIM domain 4 [Source:NCBI gene;Acc:395643]
2. C15H12ORF49 C15H12ORF49 13250 0.996 - - - - - - 0.996 - - -
3. MCM6 ENSGALG00000012348 12523 0.996 - - - - - - 0.996 - - - minichromosome maintenance complex component 6 [Source:NCBI gene;Acc:424295]
4. PPIG ENSGALG00000009839 24114 0.994 - - - - - - 0.994 - - - peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
5. ZNF644 ENSGALG00000034253 28348 0.993 - - - - - - 0.993 - - - zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
6. HNRNPH3 ENSGALG00000003947 28724 0.993 - - - - - - 0.993 - - - heterogeneous nuclear ribonucleoprotein H3 [Source:NCBI gene;Acc:423686]
7. EIF1B ENSGALG00000038646 9508 0.986 - - - - - - 0.986 - - - eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
8. VSX1 ENSGALG00000037576 1517 0.986 - - - - - - 0.986 - - - visual system homeobox 1 [Source:NCBI gene;Acc:395537]
9. Sep-06 Sep-06 5961 0.986 - - - - - - 0.986 - - -
10. LRPAP1 ENSGALG00000015612 3526 0.986 - - - - - - 0.986 - - - LDL receptor related protein associated protein 1 [Source:NCBI gene;Acc:395936]
11. WDHD1 ENSGALG00000012199 3570 0.986 - - - - - - 0.986 - - - WD repeat and HMG-box DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:23170]
12. CORO1C ENSGALG00000004901 7055 0.986 - - - - - - 0.986 - - - coronin 1C [Source:NCBI gene;Acc:416893]
13. ZEB1 ENSGALG00000007260 9277 0.985 - - - - - - 0.985 - - - zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
14. USPL1 ENSGALG00000017079 6263 0.985 - - - - - - 0.985 - - - ubiquitin specific peptidase like 1 [Source:NCBI gene;Acc:395436]
15. MCM3 ENSGALG00000016676 16934 0.985 - - - - - - 0.985 - - - minichromosome maintenance complex component 3 [Source:NCBI gene;Acc:422043]
16. RNF141 ENSGALG00000029586 4962 0.985 - - - - - - 0.985 - - - ring finger protein 141 [Source:NCBI gene;Acc:423039]
17. FAT1 ENSGALG00000013579 6030 0.985 - - - - - - 0.985 - - - FAT atypical cadherin 1 [Source:HGNC Symbol;Acc:HGNC:3595]
18. FAM192A ENSGALG00000021473 10213 0.985 - - - - - - 0.985 - - - family with sequence similarity 192 member A [Source:NCBI gene;Acc:415647]
19. C9orf64 ENSGALG00000012589 6097 0.985 - - - - - - 0.985 - - - chromosome 9 open reading frame 64 [Source:HGNC Symbol;Acc:HGNC:28144]
20. ARHGAP32 ENSGALG00000043511 7916 0.984 - - - - - - 0.984 - - - Rho GTPase activating protein 32 [Source:HGNC Symbol;Acc:HGNC:17399]
21. GPC1 ENSGALG00000040316 13364 0.983 - - - - - - 0.983 - - - glypican 1 [Source:NCBI gene;Acc:424770]
22. HDAC8 ENSGALG00000004825 12066 0.983 - - - - - - 0.983 - - - histone deacetylase 8, transcript variant X2
23. CCNYL1 ENSGALG00000008485 11958 0.983 - - - - - - 0.983 - - - cyclin Y like 1
24. DAPK3 ENSGALG00000037733 6215 0.983 - - - - - - 0.983 - - - death-associated protein kinase 3, transcript variant X2
25. EIF3D ENSGALG00000012529 40887 0.982 - - - - - - 0.982 - - - eukaryotic translation initiation factor 3 subunit D [Source:HGNC Symbol;Acc:HGNC:3278]
26. CNOT6 ENSGALG00000034316 10496 0.982 - - - - - - 0.982 - - - CCR4-NOT transcription complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14099]
27. RAB12 ENSGALG00000033608 14160 0.982 - - - - - - 0.982 - - - RAB12, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:31332]
28. MATR3 ENSGALG00000002478 12793 0.982 - - - - - - 0.982 - - - matrin 3 [Source:NCBI gene;Acc:373948]
29. EFTUD2 ENSGALG00000000988 17913 0.982 - - - - - - 0.982 - - - elongation factor Tu GTP binding domain containing 2 [Source:NCBI gene;Acc:428281]
30. CXCL12 ENSGALG00000041346 4128 0.981 - - - - - - 0.981 - - - C-X-C motif chemokine ligand 12 [Source:NCBI gene;Acc:395180]
31. DNAJC7 ENSGALG00000042796 14597 0.979 - - - - - - 0.979 - - - DnaJ heat shock protein family (Hsp40) member C7 [Source:NCBI gene;Acc:428312]
32. CTBPL ENSGALG00000007642 14238 0.979 - - - - - - 0.979 - - - C-terminal binding protein-like [Source:NCBI gene;Acc:416354]
33. TMEM18 ENSGALG00000028744 11779 0.978 - - - - - - 0.978 - - - transmembrane protein 18 [Source:NCBI gene;Acc:421911]
34. INTS4 ENSGALG00000000091 5965 0.978 - - - - - - 0.978 - - - integrator complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:25048]
35. SLC9A3R1 ENSGALG00000007650 13053 0.975 - - - - - - 0.975 - - - SLC9A3 regulator 1 [Source:NCBI gene;Acc:422108]
36. IFT20 ENSGALG00000005707 23973 0.972 - - - - - - 0.972 - - - intraflagellar transport 20 [Source:HGNC Symbol;Acc:HGNC:30989]
37. UBE2L3 ENSGALG00000036739 21401 0.97 - - - - - - 0.970 - - - ubiquitin conjugating enzyme E2 L3 [Source:NCBI gene;Acc:416769]
38. RAP1B ENSGALG00000009927 26562 0.97 - - - - - - 0.970 - - - RAP1B, member of RAS oncogene family [Source:NCBI gene;Acc:417840]
39. DHFR ENSGALG00000026757 18478 0.969 - - - - - - 0.969 - - - dihydrofolate reductase [Source:NCBI gene;Acc:427317]
40. LRPPRC ENSGALG00000009967 17091 0.966 - - - - - - 0.966 - - - leucine rich pentatricopeptide repeat containing [Source:HGNC Symbol;Acc:HGNC:15714]
41. CDCA4 ENSGALG00000011692 10381 0.965 - - - - - - 0.965 - - - cell division cycle associated 4 [Source:NCBI gene;Acc:423500]
42. HNRNPM ENSGALG00000000377 40684 0.955 - - - - - - 0.955 - - - heterogeneous nuclear ribonucleoprotein M [Source:NCBI gene;Acc:420054]
43. SMARCE1 ENSGALG00000003882 49063 0.951 - - - - - - 0.951 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:NCBI gene;Acc:420047]
44. LUM ENSGALG00000011271 44020 0.811 - - - - - - 0.811 - - - lumican [Source:NCBI gene;Acc:417891]
45. STK3 ENSGALG00000032850 6339 0.806 - - - - - - - 0.806 - - serine/threonine kinase 3 [Source:NCBI gene;Acc:425375]
46. TGDS ENSGALG00000016898 3206 0.8 - - - - - - - 0.800 - - TDP-glucose 4,6-dehydratase [Source:HGNC Symbol;Acc:HGNC:20324]
47. ACTR8 ENSGALG00000005385 3647 0.799 - - - - - - - 0.799 - - ARP8 actin related protein 8 homolog [Source:HGNC Symbol;Acc:HGNC:14672]
48. SPCS1 ENSGALG00000001655 7718 0.783 - - - - - - - 0.783 - - signal peptidase complex subunit 1 [Source:NCBI gene;Acc:415899]
49. SSRP1 ENSGALG00000007520 18849 0.78 - - - - - - - 0.780 - - structure specific recognition protein 1 [Source:NCBI gene;Acc:396509]
50. VEZT ENSGALG00000011357 2476 0.775 - - - - - - - 0.775 - - vezatin, adherens junctions transmembrane protein [Source:HGNC Symbol;Acc:HGNC:18258]
51. HOXA3 ENSGALG00000027925 4287 0.775 - - - - - - - 0.775 - - homeobox A3 [Source:HGNC Symbol;Acc:HGNC:5104]
52. RPL3 ENSGALG00000012172 118287 0.772 - - - - - - 0.772 - - - ribosomal protein L3 [Source:NCBI gene;Acc:418016]
53. CASP6 ENSGALG00000012186 6639 0.772 - - - - - - - 0.772 - - caspase 6 [Source:NCBI gene;Acc:395477]
54. SUB1 ENSGALG00000003248 56412 0.771 - - - - - - 0.771 - - - SUB1 homolog, transcriptional regulator [Source:NCBI gene;Acc:427425]
55. PUS1 ENSGALG00000002354 10153 0.77 - - - - - - - 0.770 - - pseudouridylate synthase 1 [Source:HGNC Symbol;Acc:HGNC:15508]
56. MAU2 ENSGALG00000002969 10604 0.768 - - - - - - - 0.768 - - MAU2 sister chromatid cohesion factor [Source:HGNC Symbol;Acc:HGNC:29140]
57. DCTD ENSGALG00000010674 8396 0.768 - - - - - - - 0.768 - - dCMP deaminase [Source:NCBI gene;Acc:422556]
58. HMGB3 ENSGALG00000009071 12011 0.763 - - - - - - - 0.763 - - high mobility group box 3 [Source:NCBI gene;Acc:396232]
59. GABPB1 ENSGALG00000023440 5676 0.758 - - - - - - - 0.758 - - GA binding protein transcription factor beta subunit 1 [Source:NCBI gene;Acc:415453]
60. PRKACB ENSGALG00000028530 12506 0.757 - - - - - - - 0.757 - - protein kinase cAMP-activated catalytic subunit beta, transcript variant X2
61. SOX11 ENSGALG00000016397 12144 0.755 - - - - - - - 0.755 - - SRY-box 11 [Source:NCBI gene;Acc:396104]
62. VPS8 ENSGALG00000006704 5419 0.755 - - - - - - - 0.755 - - VPS8, CORVET complex subunit [Source:HGNC Symbol;Acc:HGNC:29122]
63. CDKN1B ENSGALG00000022980 4606 0.754 - - - - - - - 0.754 - - cyclin dependent kinase inhibitor 1B [Source:NCBI gene;Acc:374106]
64. CLK3 ENSGALG00000001362 2171 0.754 - - - - - - - 0.754 - - CDC like kinase 3 [Source:NCBI gene;Acc:415295]
65. UROD ENSGALG00000010219 5810 0.752 - - - - - - - 0.752 - - uroporphyrinogen decarboxylase, transcript variant X2
66. NUP205 ENSGALG00000011662 4157 0.752 - - - - - - - 0.752 - - nucleoporin 205
67. MRPL55 5995 0.752 - - - - - - - 0.752 - - mitochondrial ribosomal protein L55
68. CHMP1B ENSGALG00000040746 4031 0.752 - - - - - - - 0.752 - - charged multivesicular body protein 1B [Source:NCBI gene;Acc:422143]
69. CPOX ENSGALG00000015240 5292 0.749 - - - - - - - 0.749 - - coproporphyrinogen oxidase
70. RHOGL ENSGALG00000005464, ENSGALG00000005475 5791 0.748 - - - - - - - 0.748 - - rho-related GTP-binding protein RhoG-like [Source:NCBI gene;Acc:422207]
71. MFAP1 ENSGALG00000028295 6043 0.748 - - - - - - - 0.748 - - microfibrillar associated protein 1 [Source:NCBI gene;Acc:415586]
72. DAD1 ENSGALG00000035626 32604 0.748 - - - - - - - 0.748 - - defender against cell death 1 [Source:NCBI gene;Acc:395343]
73. NELL2 ENSGALG00000009601 4243 0.747 - - - - - - - 0.747 - - neural EGFL like 2 [Source:NCBI gene;Acc:417799]
74. CCNG2 ENSGALG00000010347 9122 0.742 - - - - - - - 0.742 - - cyclin G2 [Source:HGNC Symbol;Acc:HGNC:1593]
75. UNC119B ENSGALG00000026722 8622 0.742 - - - - - - - 0.742 - - unc-119 lipid binding chaperone B [Source:HGNC Symbol;Acc:HGNC:16488]
76. CSRP2BP CSRP2BP 4679 0.741 - - - - - - - 0.741 - -
77. PHF14 ENSGALG00000038041 13687 0.741 - - - - - - - 0.741 - - PHD finger protein 14 [Source:NCBI gene;Acc:420583]
78. ENSGALG00000013067 ENSGALG00000013067 10741 0.741 - - - - - - - 0.741 - -
79. CHURC1 ENSGALG00000042309 12066 0.741 - - - - - - - 0.741 - - churchill domain containing 1 [Source:NCBI gene;Acc:395448]
80. MANF ENSGALG00000002362 7518 0.739 - - 0.739 - - - - - - - mesencephalic astrocyte derived neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:15461]
81. NUDT7 ENSGALG00000034395 7396 0.739 - - - - - - 0.739 - - - nudix hydrolase 7 [Source:NCBI gene;Acc:415800]
82. NUP85 ENSGALG00000007974 21249 0.739 - - - - - - - 0.739 - - nucleoporin 85 [Source:NCBI gene;Acc:422120]
83. ANGEL1 ENSGALG00000010372 1763 0.738 - - - - - - - 0.738 - - angel homolog 1 [Source:NCBI gene;Acc:423370]
84. PSMD13 ENSGALG00000043684 14720 0.737 - - - - - - - 0.737 - - proteasome 26S subunit, non-ATPase 13 [Source:HGNC Symbol;Acc:HGNC:9558]
85. DCPS ENSGALG00000031143 10191 0.737 - - - - - - - 0.737 - - decapping enzyme, scavenger [Source:HGNC Symbol;Acc:HGNC:29812]
86. RIT1 ENSGALG00000014647 7174 0.737 - - - - - - - 0.737 - - Ras like without CAAX 1 [Source:NCBI gene;Acc:425068]
87. OSBPL11 ENSGALG00000012059 2523 0.735 - - - - - - - 0.735 - - oxysterol binding protein like 11 [Source:HGNC Symbol;Acc:HGNC:16397]
88. NDUFS5 ENSGALG00000003625 27698 0.735 - - - - - - - 0.735 - - NADH:ubiquinone oxidoreductase subunit S5 [Source:HGNC Symbol;Acc:HGNC:7712]
89. EBAG9 ENSGALG00000036293 10058 0.735 - - - - - - - 0.735 - - estrogen receptor binding site associated, antigen, 9 [Source:NCBI gene;Acc:420276]
90. TFB2M ENSGALG00000010651 4374 0.734 - - - - - - - 0.734 - - transcription factor B2, mitochondrial
91. DLG3 ENSGALG00000041900 3016 0.734 - - - - - - - 0.734 - - discs large MAGUK scaffold protein 3 [Source:HGNC Symbol;Acc:HGNC:2902]
92. GCSH ENSGALG00000032679 29231 0.733 - - - - - - - 0.733 - - glycine cleavage system protein H [Source:NCBI gene;Acc:415803]
93. NDUFA12 ENSGALG00000011325 19807 0.732 - - - - - - - 0.732 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:NCBI gene;Acc:417907]
94. TIMMDC1 ENSGALG00000024480 9337 0.729 - - - - - - - 0.729 - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
95. CHRAC1 ENSGALG00000040823 5695 0.729 - - - - - - - 0.729 - - chromatin accessibility complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:13544]
96. RYK ENSGALG00000006488 10533 0.729 - - - - - - - 0.729 - - receptor-like tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:10481]
97. YME1L1 ENSGALG00000007492 8652 0.728 - - - - - - - 0.728 - - YME1 like 1 ATPase [Source:NCBI gene;Acc:428418]
98. SLC25A24 ENSGALG00000001938 3671 0.728 - - - - - - - 0.728 - - solute carrier family 25 member 24 [Source:HGNC Symbol;Acc:HGNC:20662]
99. UNC50 ENSGALG00000036076 2603 0.727 - - - - - - - 0.727 - - unc-50 inner nuclear membrane RNA binding protein [Source:NCBI gene;Acc:418691]
100. MRPL2 ENSGALG00000008597 16500 0.726 - - - - - - - 0.726 - - mitochondrial ribosomal protein L2 [Source:HGNC Symbol;Acc:HGNC:14056]

There are 73 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA