Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PDLIM1

Gene Name Gene ID Reads Annotation
PDLIM1 ENSGALG00000005422 3385 PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:HGNC:2067]











Genes with expression patterns similar to PDLIM1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PDLIM1 ENSGALG00000005422 3385 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:HGNC:2067]
2. FABP3 ENSGALG00000037050 873 0.967 - - - - - - - 0.967 - - fatty acid binding protein 3 [Source:NCBI gene;Acc:419557]
3. TAB2 ENSGALG00000012356 3467 0.967 - - - - - - - 0.967 - - TGF-beta activated kinase 1 (MAP3K7) binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17075]
4. POLR2H ENSGALG00000008534 21521 0.96 - - - - - - - 0.960 - - RNA polymerase II subunit H [Source:NCBI gene;Acc:424954]
5. C4orf46 ENSGALG00000009432 3255 0.959 - - - - - - - 0.959 - - chromosome 4 open reading frame 46 [Source:HGNC Symbol;Acc:HGNC:27320]
6. VPS39 ENSGALG00000008991 4018 0.956 - - - - - - - 0.956 - - VPS39, HOPS complex subunit [Source:NCBI gene;Acc:423230]
7. ARPC5L ENSGALG00000001014 5642 0.955 - - - - - - - 0.955 - - actin related protein 2/3 complex subunit 5 like [Source:HGNC Symbol;Acc:HGNC:23366]
8. EFNB1 ENSGALG00000036539 2706 0.954 - - - - - - - 0.954 - - ephrin B1 [Source:NCBI gene;Acc:395896]
9. MED1 ENSGALG00000001708 9556 0.953 - - - - - - - 0.953 - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
10. FZD6 ENSGALG00000030626 3336 0.95 - - - - - - - 0.950 - - frizzled class receptor 6 [Source:NCBI gene;Acc:378788]
11. TBC1D1 ENSGALG00000039380 4423 0.95 - - - - - - - 0.950 - - TBC1 domain family member 1 [Source:NCBI gene;Acc:426162]
12. DUSP3 ENSGALG00000035369 1790 0.948 - - - - - - - 0.948 - - dual specificity phosphatase 3
13. UQCC UQCC 5913 0.948 - - - - - - - 0.948 - -
14. HEXA ENSGALG00000043828 4789 0.947 - - - - - - - 0.947 - - hexosaminidase subunit alpha [Source:NCBI gene;Acc:415320]
15. CRADD ENSGALG00000011297 1653 0.947 - - - - - - - 0.947 - - CASP2 and RIPK1 domain containing adaptor with death domain [Source:NCBI gene;Acc:417900]
16. EMC7 ENSGALG00000009637 4969 0.947 - - - - - - - 0.947 - - ER membrane protein complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:24301]
17. NEK1 ENSGALG00000009683 4305 0.947 - - - - - - - 0.947 - - NIMA related kinase 1 [Source:HGNC Symbol;Acc:HGNC:7744]
18. EIF1AY ENSGALG00000016410 6431 0.946 - - - - - - - 0.946 - - eukaryotic translation initiation factor 1A, Y-linked [Source:NCBI gene;Acc:418606]
19. ELP3 ENSGALG00000016624 4483 0.946 - - - - - - - 0.946 - - elongator acetyltransferase complex subunit 3 [Source:NCBI gene;Acc:422021]
20. ZEB1 ENSGALG00000007260 9277 0.946 - - - - - - - 0.946 - - zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
21. DCTN6 ENSGALG00000010298 7507 0.945 - - - - - - - 0.945 - - dynactin subunit 6 [Source:NCBI gene;Acc:771257]
22. PDE4B ENSGALG00000011094 1871 0.945 - - - - - - - 0.945 - - phosphodiesterase 4B [Source:NCBI gene;Acc:424700]
23. ANKS1B ENSGALG00000011549 440 0.945 - - - - - - - 0.945 - - ankyrin repeat and sterile alpha motif domain containing 1B [Source:NCBI gene;Acc:417927]
24. UBE2B ENSGALG00000032664 6069 0.945 - - - - - - - 0.945 - - ubiquitin conjugating enzyme E2 B [Source:HGNC Symbol;Acc:HGNC:12473]
25. ERAL1 ENSGALG00000003995 1114 0.945 - - - - - - - 0.945 - - Era like 12S mitochondrial rRNA chaperone 1 [Source:NCBI gene;Acc:374084]
26. WDR92 ENSGALG00000008760 3934 0.945 - - - - - - - 0.945 - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
27. FPGS ENSGALG00000042460 1749 0.945 - - - - - - - 0.945 - - folylpolyglutamate synthase [Source:HGNC Symbol;Acc:HGNC:3824]
28. ATOX1 ENSGALG00000004176 16486 0.944 - - - - - - - 0.944 - - antioxidant 1 copper chaperone [Source:NCBI gene;Acc:770231]
29. BCL2L1 ENSGALG00000006211 2490 0.944 - - - - - - - 0.944 - - BCL2 like 1 [Source:NCBI gene;Acc:373954]
30. GTF2H1 ENSGALG00000042340 1553 0.944 - - - - - - - 0.944 - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
31. PDIA3 ENSGALG00000008348 4982 0.944 - - - - - - - 0.944 - - protein disulfide isomerase family A member 3 [Source:NCBI gene;Acc:373899]
32. CHEK2 ENSGALG00000005695 1558 0.944 - - - - - - - 0.944 - - checkpoint kinase 2 [Source:NCBI gene;Acc:768913]
33. SPINT1 ENSGALG00000008469 5735 0.944 - - - - - - - 0.944 - - serine peptidase inhibitor, Kunitz type 1, transcript variant X2
34. IFT81 ENSGALG00000003854 2534 0.944 - - - - - - - 0.944 - - intraflagellar transport 81 [Source:NCBI gene;Acc:416839]
35. STXBP3 ENSGALG00000002001 1740 0.944 - - - - - - - 0.944 - - syntaxin binding protein 3 [Source:NCBI gene;Acc:424341]
36. FAM69B ENSGALG00000002437 1253 0.943 - - - - - - - 0.943 - - family with sequence similarity 69 member B [Source:HGNC Symbol;Acc:HGNC:28290]
37. MAP9 ENSGALG00000020253 785 0.943 - - - - - - - 0.943 - - microtubule associated protein 9, transcript variant X7
38. C12orf45 C12orf45 2445 0.943 - - - - - - - 0.943 - -
39. ADAMTSL1 1479 0.943 - - - - - - - 0.943 - - ADAMTS like 1, transcript variant X3
40. XPOT ENSGALG00000009835 2953 0.943 - - - - - - - 0.943 - - exportin for tRNA [Source:NCBI gene;Acc:417824]
41. ERICH1 ENSGALG00000031021 1495 0.942 - - - - - - - 0.942 - - glutamate rich 1 [Source:NCBI gene;Acc:421904]
42. C20ORF7 C20ORF7 2383 0.942 - - - - - - - 0.942 - -
43. PIK3C2B ENSGALG00000037043 4522 0.942 - - - - - - - 0.942 - - phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
44. PES1 ENSGALG00000007778 12248 0.941 - - - - - - - 0.941 - - pescadillo ribosomal biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:8848]
45. PDS5B ENSGALG00000017070 3998 0.941 - - - - - - - 0.941 - - PDS5 cohesin associated factor B [Source:NCBI gene;Acc:418910]
46. ANKRD49 ENSGALG00000017210 3247 0.941 - - - - - - - 0.941 - - ankyrin repeat domain 49 [Source:HGNC Symbol;Acc:HGNC:25970]
47. SDHA ENSGALG00000013167 6509 0.941 - - - - - - - 0.941 - - succinate dehydrogenase complex flavoprotein subunit A [Source:NCBI gene;Acc:395758]
48. XPR1 ENSGALG00000003893 5642 0.938 - - - - - - - 0.938 - - xenotropic and polytropic retrovirus receptor 1 [Source:HGNC Symbol;Acc:HGNC:12827]
49. SOX9 ENSGALG00000004386 14802 0.938 - - - - - - - 0.938 - - SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
50. PUM2 ENSGALG00000016481 23625 0.937 - - - - - - - 0.937 - - pumilio RNA binding family member 2 [Source:NCBI gene;Acc:421961]
51. CABIN1 ENSGALG00000006363 4415 0.937 - - - - - - - 0.937 - - calcineurin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:24187]
52. DEK ENSGALG00000012684 14179 0.935 - - - - - - - 0.935 - - DEK proto-oncogene [Source:NCBI gene;Acc:420828]
53. SUCLG1 ENSGALG00000015961 14323 0.933 - - - - - - - 0.933 - - succinate-CoA ligase alpha subunit [Source:NCBI gene;Acc:422932]
54. ACTR3 ENSGALG00000012159 16020 0.931 - - - - - - - 0.931 - - ARP3 actin related protein 3 homolog [Source:NCBI gene;Acc:374197]
55. CMPK CMPK 9569 0.929 - - - - - - - 0.929 - -
56. SURF6 ENSGALG00000038413 11178 0.922 - - - - - - - 0.922 - - surfeit 6 [Source:NCBI gene;Acc:417160]
57. DYNC1LI1 ENSGALG00000011491 11011 0.921 - - - - - - - 0.921 - - dynein cytoplasmic 1 light intermediate chain 1 [Source:NCBI gene;Acc:420668]
58. ACTN1 ENSGALG00000042458 10477 0.919 - - - - - - - 0.919 - - actinin, alpha 1 [Source:NCBI gene;Acc:373918]
59. LUC7L2 ENSGALG00000036238 11817 0.914 - - - - - - - 0.914 - - LUC7 like 2, pre-mRNA splicing factor [Source:NCBI gene;Acc:417971]
60. CASK ENSGALG00000042400 8485 0.913 - - - - - - - 0.913 - - calcium/calmodulin dependent serine protein kinase [Source:HGNC Symbol;Acc:HGNC:1497]
61. PFDN2 ENSGALG00000026374 22020 0.913 - - - - - - - 0.913 - - prefoldin subunit 2 [Source:HGNC Symbol;Acc:HGNC:8867]
62. PPP2R5D ENSGALG00000040005 6804 0.912 - - - - - - - 0.912 - - protein phosphatase 2 regulatory subunit B'delta [Source:HGNC Symbol;Acc:HGNC:9312]
63. C28H19ORF10 C28H19ORF10 16529 0.906 - - - - - - - 0.906 - -
64. WDR61 ENSGALG00000003221 11352 0.905 - - - - - - - 0.905 - - WD repeat domain 61 [Source:NCBI gene;Acc:415359]
65. HLX ENSGALG00000037257 5834 0.902 - - - - - - - 0.902 - - H2.0 like homeobox [Source:HGNC Symbol;Acc:HGNC:4978]
66. SHISA5 ENSGALG00000004661 8573 0.9 - - - - - - - 0.900 - - shisa family member 5 [Source:NCBI gene;Acc:415948]
67. ARHGAP18 ENSGALG00000031843 2117 0.889 - - - - - - - 0.889 - - Rho GTPase activating protein 18 [Source:HGNC Symbol;Acc:HGNC:21035]
68. MIPEP ENSGALG00000017118 8666 0.888 - - - - - - - 0.888 - - mitochondrial intermediate peptidase [Source:HGNC Symbol;Acc:HGNC:7104]
69. PCMTD2 ENSGALG00000005901 1833 0.887 - - - - - - - 0.887 - - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15882]
70. POC1A ENSGALG00000034572 1572 0.884 - - - - - - - 0.884 - - POC1 centriolar protein A [Source:HGNC Symbol;Acc:HGNC:24488]
71. SMNDC1 ENSGALG00000008561 14415 0.882 - - - - - - - 0.882 - - survival motor neuron domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16900]
72. EHMT1 ENSGALG00000033678 5720 0.882 - - - - - - - 0.882 - - euchromatic histone lysine methyltransferase 1 [Source:NCBI gene;Acc:417250]
73. GATA6 ENSGALG00000014976 3256 0.882 - - - - - - - 0.882 - - GATA binding protein 6 [Source:NCBI gene;Acc:396390]
74. TLE4 TLE4 7278 0.88 - - - - - - - 0.880 - -
75. TET1 ENSGALG00000031604 13002 0.878 - - - - - - - 0.878 - - tet methylcytosine dioxygenase 1 [Source:HGNC Symbol;Acc:HGNC:29484]
76. FOXK2 ENSGALG00000001577 6346 0.873 - - - - - - - 0.873 - - forkhead box K2 [Source:HGNC Symbol;Acc:HGNC:6036]
77. ASF1A ENSGALG00000014887 11319 0.871 - - - - - - - 0.871 - - anti-silencing function 1A histone chaperone [Source:NCBI gene;Acc:723780]
78. ACADS ENSGALG00000007072 2737 0.87 - - - - - - - 0.870 - - acyl-CoA dehydrogenase short chain [Source:NCBI gene;Acc:416969]
79. FDX1 ENSGALG00000026507 2573 0.868 - - - - - - - 0.868 - - ferredoxin 1 [Source:NCBI gene;Acc:373947]
80. CHP1 ENSGALG00000008569 6876 0.866 - - - - - - - 0.866 - - calcineurin like EF-hand protein 1 [Source:NCBI gene;Acc:423211]
81. KIF2A ENSGALG00000014737 16391 0.858 - - - - - - - 0.858 - - kinesin heavy chain member 2A [Source:NCBI gene;Acc:427156]
82. RAB14 ENSGALG00000001474 12617 0.857 - - - - - - - 0.857 - - RAB14, member RAS oncogene family [Source:NCBI gene;Acc:417119]
83. TBCA ENSGALG00000004353 18510 0.855 - - - - - - - 0.855 - - tubulin folding cofactor A [Source:NCBI gene;Acc:416367]
84. BASP1 ENSGALG00000012952 19549 0.844 - - - - - - - 0.844 - - brain abundant membrane attached signal protein 1 [Source:NCBI gene;Acc:373905]
85. NAA15 ENSGALG00000009782 18563 0.84 - - - - - - - 0.840 - - N(alpha)-acetyltransferase 15, NatA auxiliary subunit [Source:HGNC Symbol;Acc:HGNC:30782]
86. TULP3 ENSGALG00000013424 2064 0.817 - - - - - - 0.817 - - - tubby like protein 3 [Source:HGNC Symbol;Acc:HGNC:12425]
87. CDC40 ENSGALG00000015061 6118 0.816 - - - - - - - 0.816 - - cell division cycle 40 [Source:NCBI gene;Acc:421760]
88. ADD3 ENSGALG00000008542 13814 0.815 - - - - - - - 0.815 - - adducin 3 (gamma) [Source:NCBI gene;Acc:373892]
89. FAM168B ENSGALG00000002172 12162 0.809 - - - - - - - 0.809 - - family with sequence similarity 168 member B [Source:HGNC Symbol;Acc:HGNC:27016]
90. TXNDC12 ENSGALG00000010569 13822 0.797 - - - - - - - 0.797 - - thioredoxin domain containing 12 [Source:NCBI gene;Acc:772208]
91. RBM38 ENSGALG00000026081 7115 0.794 - - - - - - - 0.794 - - RNA binding motif protein 38 [Source:NCBI gene;Acc:768866]
92. E2F6 ENSGALG00000016454 4747 0.793 - - - - - - - 0.793 - - E2F transcription factor 6 [Source:NCBI gene;Acc:421943]
93. OPTN ENSGALG00000013738 1024 0.793 - - - - - - 0.793 - - - optineurin [Source:NCBI gene;Acc:374079]
94. SUMO1 ENSGALG00000008435 19847 0.793 - - - - - - - 0.793 - - small ubiquitin-like modifier 1 [Source:NCBI gene;Acc:373930]
95. DKC1 ENSGALG00000005054 30350 0.791 - - - - - - - 0.791 - - dyskerin pseudouridine synthase 1 [Source:NCBI gene;Acc:422196]
96. POLR2D ENSGALG00000002057 14548 0.791 - - - - - - - 0.791 - - RNA polymerase II subunit D [Source:NCBI gene;Acc:424754]
97. CLTCL1 ENSGALG00000041760 9351 0.788 - - - - - - 0.788 - - - clathrin, heavy chain-like 1, transcript variant X6
98. ZDHHC21 ENSGALG00000027428 497 0.784 - - - - - - 0.784 - - - zinc finger DHHC-type containing 21 [Source:NCBI gene;Acc:427356]
99. FRG1 ENSGALG00000013590 2590 0.783 - - - - - - 0.783 - - - FSHD region gene 1
100. DEGS1 ENSGALG00000009330 3599 0.783 - - - - - - 0.783 - - - delta 4-desaturase, sphingolipid 1 [Source:NCBI gene;Acc:421327]

There are 107 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA