Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PDGFRA

Gene Name Gene ID Reads Annotation
PDGFRA ENSGALG00000013929 12501 platelet-derived growth factor receptor, alpha polypeptide [Source:NCBI gene;Acc:395509]











Genes with expression patterns similar to PDGFRA

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PDGFRA ENSGALG00000013929 12501 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 platelet-derived growth factor receptor, alpha polypeptide [Source:NCBI gene;Acc:395509]
2. COL1A2 ENSGALG00000009641 46236 1.519 - - - - 0.722 - - 0.797 - - collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
3. PLOD2 ENSGALG00000006783 22789 1.423 - - - - 0.721 - 0.702 - - - procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Source:HGNC Symbol;Acc:HGNC:9082]
4. GPI ENSGALG00000004956 40030 0.953 - - - - - - 0.953 - - - glucose-6-phosphate isomerase [Source:NCBI gene;Acc:415783]
5. TPMT ENSGALG00000012687 9537 0.936 - - - - - - - 0.936 - - thiopurine S-methyltransferase [Source:HGNC Symbol;Acc:HGNC:12014]
6. BOD1L1 ENSGALG00000026470 9250 0.935 - - - - - - - 0.935 - - biorientation of chromosomes in cell division 1 like 1 [Source:HGNC Symbol;Acc:HGNC:31792]
7. EIF4E2 ENSGALG00000007919 8163 0.926 - - - - - - - 0.926 - - eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:HGNC:3293]
8. MYLK ENSGALG00000011708 10434 0.923 - - - - - - - 0.923 - - Gallus gallus myosin light chain kinase (MYLK), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001322361]
9. RWDD3 ENSGALG00000038421 10909 0.922 - - - - - - - 0.922 - - RWD domain containing 3 [Source:NCBI gene;Acc:424481]
10. ARF6 ENSGALG00000026944 22014 0.922 - - - - - - - 0.922 - - ADP ribosylation factor 6 [Source:NCBI gene;Acc:428927]
11. DGCR2 ENSGALG00000005891 8405 0.921 - - - - - - - 0.921 - - DiGeorge syndrome critical region gene 2 [Source:HGNC Symbol;Acc:HGNC:2845]
12. IMPA1 ENSGALG00000034487 3691 0.919 - - - - - - - 0.919 - - inositol monophosphatase 1 [Source:HGNC Symbol;Acc:HGNC:6050]
13. ING4 ENSGALG00000014457 5561 0.919 - - - - - - - 0.919 - - inhibitor of growth family member 4 [Source:NCBI gene;Acc:418281]
14. MCM2 ENSGALG00000006037 13458 0.919 - - - - - - - 0.919 - - minichromosome maintenance complex component 2 [Source:NCBI gene;Acc:416027]
15. CYFIP1 ENSGALG00000016736 6701 0.919 - - - - - - - 0.919 - - cytoplasmic FMR1 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:13759]
16. NCAPD2 ENSGALG00000039448 8658 0.918 - - - - - - - 0.918 - - non-SMC condensin I complex subunit D2 [Source:NCBI gene;Acc:418275]
17. URI1 ENSGALG00000004506 6024 0.917 - - - - - - - 0.917 - - URI1, prefoldin like chaperone [Source:HGNC Symbol;Acc:HGNC:13236]
18. SSU72 ENSGALG00000001489 7589 0.917 - - - - - - - 0.917 - - SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:419410]
19. CDC42SE2 ENSGALG00000027258 4725 0.917 - - - - - - - 0.917 - - CDC42 small effector 2 [Source:NCBI gene;Acc:768825]
20. PTDSS1 ENSGALG00000030185 5515 0.916 - - - - - - - 0.916 - - phosphatidylserine synthase 1 [Source:NCBI gene;Acc:428374]
21. SLC4A1AP ENSGALG00000010047 3171 0.914 - - - - - - - 0.914 - - solute carrier family 4 member 1 adaptor protein [Source:HGNC Symbol;Acc:HGNC:13813]
22. PPP1R7 ENSGALG00000031766 22187 0.913 - - - - - - - 0.913 - - protein phosphatase 1 regulatory subunit 7 [Source:NCBI gene;Acc:424844]
23. HADHA ENSGALG00000016536 3791 0.913 - - - - - - - 0.913 - - hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha [Source:NCBI gene;Acc:395929]
24. NME3 ENSGALG00000027635 5974 0.911 - - - - - - - 0.911 - - NME/NM23 nucleoside diphosphate kinase 3 [Source:NCBI gene;Acc:416399]
25. MAP3K7 ENSGALG00000015596 15164 0.91 - - - - - - - 0.910 - - mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]
26. ALG6 ENSGALG00000010991 3258 0.91 - - - - - - - 0.910 - - ALG6, alpha-1,3-glucosyltransferase [Source:NCBI gene;Acc:395078]
27. EVC ENSGALG00000015037 1963 0.909 - - - - - - - 0.909 - - EvC ciliary complex subunit 1 [Source:NCBI gene;Acc:422851]
28. ANGPTL2 ENSGALG00000000927 2580 0.908 - - - - - - - 0.908 - - angiopoietin-like 2 [Source:NCBI gene;Acc:776031]
29. TIMM10 ENSGALG00000004845 31395 0.907 - - - - - - - 0.907 - - translocase of inner mitochondrial membrane 10 [Source:NCBI gene;Acc:425202]
30. TSG101 ENSGALG00000006312 8289 0.907 - - - - - - - 0.907 - - tumor susceptibility gene 101 [Source:NCBI gene;Acc:423082]
31. OGFOD3 ENSGALG00000001618 2438 0.907 - - - - - - - 0.907 - - 2-oxoglutarate and iron dependent oxygenase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26174]
32. PSTK 2511 0.907 - - - - - - - 0.907 - - phosphoseryl-tRNA kinase, transcript variant X1
33. SIK1 ENSGALG00000041988 2179 0.906 - - - - - - - 0.906 - - salt inducible kinase 1 [Source:NCBI gene;Acc:395417]
34. C1H11ORF67 C1H11ORF67 2089 0.906 - - - - - - - 0.906 - -
35. RILPL2 ENSGALG00000003321 5632 0.905 - - - - - - - 0.905 - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
36. LANCL2 ENSGALG00000032570 815 0.904 - - - - - - - 0.904 - - LanC like 2 [Source:HGNC Symbol;Acc:HGNC:6509]
37. HOXD8 ENSGALG00000037272 4338 0.904 - - - - - - - 0.904 - - homeobox D8 [Source:NCBI gene;Acc:396301]
38. GLMN ENSGALG00000005959 2049 0.903 - - - - - - - 0.903 - - glomulin, FKBP associated protein [Source:HGNC Symbol;Acc:HGNC:14373]
39. ARID3C ENSGALG00000005839 646 0.903 - - - - - - - 0.903 - - AT-rich interaction domain 3C [Source:HGNC Symbol;Acc:HGNC:21209]
40. SGTA ENSGALG00000014067 2248 0.903 - - - - - - - 0.903 - - small glutamine rich tetratricopeptide repeat containing alpha [Source:NCBI gene;Acc:426396]
41. SPTBN5 395 0.903 - - - - - - - 0.903 - - spectrin beta, non-erythrocytic 5
42. VMA21 ENSGALG00000009065 6432 0.899 - - - - - - - 0.899 - - VMA21, vacuolar ATPase assembly factor [Source:NCBI gene;Acc:422385]
43. TNFRSF1A ENSGALG00000039461 1569 0.897 - - - - - - - 0.897 - - TNF receptor superfamily member 1A [Source:NCBI gene;Acc:418325]
44. PGAP2 ENSGALG00000027762 2583 0.897 - - - - - - - 0.897 - - post-GPI attachment to proteins 2 [Source:HGNC Symbol;Acc:HGNC:17893]
45. PPP4R2 ENSGALG00000007810 15127 0.886 - - - - - - - 0.886 - - protein phosphatase 4 regulatory subunit 2 [Source:NCBI gene;Acc:416098]
46. ZFX ENSGALG00000016327 5470 0.881 - - - - - - - 0.881 - - zinc finger protein, X-linked, transcript variant X4
47. HNRNPAB ENSGALG00000014381 41009 0.88 - - - - - - - 0.880 - - heterogeneous nuclear ribonucleoprotein A/B [Source:NCBI gene;Acc:396268]
48. TMEM9B ENSGALG00000005908 14074 0.875 - - - - - - - 0.875 - - TMEM9 domain family member B [Source:HGNC Symbol;Acc:HGNC:1168]
49. GAB1 ENSGALG00000009898 2741 0.874 - - - - - - - 0.874 - - GRB2 associated binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4066]
50. VPS29 ENSGALG00000004529 22509 0.866 - - - - - - - 0.866 - - VPS29, retromer complex component [Source:NCBI gene;Acc:416867]
51. ARL5B ENSGALG00000008557 12887 0.857 - - - - - - - 0.857 - - ADP ribosylation factor like GTPase 5B [Source:NCBI gene;Acc:420513]
52. EIF1B ENSGALG00000038646 9508 0.854 - - - - - - - 0.854 - - eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
53. HSP90AB1 ENSGALG00000010175 77935 0.847 - - - - - - - 0.847 - - heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
54. C5ORF13 C5ORF13 50177 0.838 - - - - - - - 0.838 - -
55. LEPREL4 LEPREL4 5609 0.838 - - - - - - - - 0.838 -
56. EPRS ENSGALG00000009598 26412 0.825 - - - - - - - 0.825 - - glutamyl-prolyl-tRNA synthetase [Source:NCBI gene;Acc:421348]
57. NDUFC2 ENSGALG00000029172 26136 0.824 - - - - - - - 0.824 - - NADH:ubiquinone oxidoreductase subunit C2 [Source:NCBI gene;Acc:404751]
58. CAPZA2 ENSGALG00000043437 47133 0.822 - - - - - - 0.822 - - - capping actin protein of muscle Z-line alpha subunit 2 [Source:NCBI gene;Acc:417771]
59. STK4 ENSGALG00000004098 11366 0.82 - - - - - - - 0.820 - - serine/threonine kinase 4 [Source:NCBI gene;Acc:419187]
60. LOC419404 ENSGALG00000021676 12078 0.82 - - - - - - - 0.820 - - uncharacterized LOC419404
61. HMGN1 ENSGALG00000016067 17375 0.818 - - - - - - - 0.818 - - high mobility group nucleosome binding domain 1 [Source:NCBI gene;Acc:395999]
62. RALB ENSGALG00000026493 14590 0.811 - - - - - - - 0.811 - - RAS like proto-oncogene B [Source:HGNC Symbol;Acc:HGNC:9840]
63. RNF4 ENSGALG00000015668 15780 0.805 - - - - - - - 0.805 - - ring finger protein 4 [Source:NCBI gene;Acc:422886]
64. TBC1D22B ENSGALG00000039130 3158 0.805 - - - - - - - 0.805 - - TBC1 domain family member 22B [Source:HGNC Symbol;Acc:HGNC:21602]
65. HSPE1 ENSGALG00000009070 87567 0.799 - - - - - - - 0.799 - - heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
66. ZFAND5 ENSGALG00000015144 9053 0.799 - - - - - - - - 0.799 - zinc finger AN1-type containing 5 [Source:NCBI gene;Acc:427254]
67. ETFDH ENSGALG00000009442 7671 0.797 - - - - - - - 0.797 - - electron transfer flavoprotein dehydrogenase [Source:NCBI gene;Acc:428724]
68. PPA1 ENSGALG00000004442 33355 0.785 - - - - - - - 0.785 - - pyrophosphatase (inorganic) 1 [Source:HGNC Symbol;Acc:HGNC:9226]
69. SLC30A5 ENSGALG00000014787 5573 0.784 - - - - - - - 0.784 - - solute carrier family 30 member 5 [Source:NCBI gene;Acc:427173]
70. NEK6 ENSGALG00000001118 20333 0.781 - - - - - - - 0.781 - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
71. EMC6 ENSGALG00000026492 20687 0.772 - - - - - - - 0.772 - - ER membrane protein complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:28430]
72. MMP2 ENSGALG00000003580 13120 0.766 - - - - 0.766 - - - - - matrix metallopeptidase 2 [Source:NCBI gene;Acc:386583]
73. USO1 ENSGALG00000010878 9506 0.765 - - - - - - - 0.765 - - USO1 vesicle transport factor [Source:NCBI gene;Acc:422575]
74. KIAA1462 1612 0.764 - - - - - - - - 0.764 - KIAA1462, transcript variant X4
75. UBE2L3 ENSGALG00000036739 21401 0.763 - - - - - - - 0.763 - - ubiquitin conjugating enzyme E2 L3 [Source:NCBI gene;Acc:416769]
76. RB1CC1 ENSGALG00000015259 4211 0.762 - - 0.762 - - - - - - - RB1 inducible coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:15574]
77. DHX15 ENSGALG00000014395 24041 0.754 - - - - - - - 0.754 - - DEAH-box helicase 15 [Source:NCBI gene;Acc:422813]
78. MED30 ENSGALG00000030862 7163 0.754 - - - - - - - - 0.754 - mediator complex subunit 30 [Source:NCBI gene;Acc:420284]
79. SPARC ENSGALG00000004184 36410 0.754 - - - - 0.754 - - - - - secreted protein acidic and cysteine rich [Source:NCBI gene;Acc:386571]
80. TTC1 ENSGALG00000001429 1866 0.752 - - 0.752 - - - - - - - tetratricopeptide repeat domain 1 [Source:HGNC Symbol;Acc:HGNC:12391]
81. RBM5 30998 0.746 - - - - - - - 0.746 - - RNA binding motif protein 5, transcript variant X1
82. TCF7L2 ENSGALG00000008883 13688 0.745 - - - - - - - 0.745 - - transcription factor 7-like 2 (T-cell specific, HMG-box) [Source:NCBI gene;Acc:395508]
83. PSMB4 ENSGALG00000000905 46735 0.74 - - - - - - - 0.740 - - proteasome subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:9541]
84. ADAMTS9 ENSGALG00000041750 1291 0.738 - - 0.738 - - - - - - - ADAM metallopeptidase with thrombospondin type 1 motif 9 [Source:HGNC Symbol;Acc:HGNC:13202]
85. CDH1 ENSGALG00000000608 6156 0.737 - - - - - - - 0.737 - - cadherin 3 [Source:NCBI gene;Acc:414845]
86. DDX46 ENSGALG00000006404 8765 0.732 - - 0.732 - - - - - - - DEAD-box helicase 46 [Source:HGNC Symbol;Acc:HGNC:18681]
87. ALDH3A2 ENSGALG00000004763 3363 0.731 - - 0.731 - - - - - - - aldehyde dehydrogenase 3 family member A2 [Source:NCBI gene;Acc:417615]
88. EVX1 ENSGALG00000037310 1974 0.729 - - - - - 0.729 - - - - even-skipped homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3506]
89. EMC2 ENSGALG00000040325 16227 0.726 - - - - - - - 0.726 - - ER membrane protein complex subunit 2 [Source:NCBI gene;Acc:420273]
90. FN1 ENSGALG00000003578 37024 0.726 - - - - 0.726 - - - - - fibronectin 1 [Source:NCBI gene;Acc:396133]
91. KRR1 ENSGALG00000010227 11783 0.724 - - 0.724 - - - - - - - KRR1, small subunit processome component homolog [Source:NCBI gene;Acc:417863]
92. HHIP ENSGALG00000009948 1536 0.721 - - - - - 0.721 - - - - hedgehog interacting protein [Source:HGNC Symbol;Acc:HGNC:14866]
93. UCHL3 ENSGALG00000016921 16208 0.72 - - - - - - - 0.720 - - ubiquitin C-terminal hydrolase L3 [Source:NCBI gene;Acc:395626]
94. TIMM21 ENSGALG00000013709 3215 0.719 - - - - - - - 0.719 - - translocase of inner mitochondrial membrane 21 [Source:HGNC Symbol;Acc:HGNC:25010]
95. MTF2 ENSGALG00000043087 15225 0.719 - - - - - - - 0.719 - - metal response element binding transcription factor 2 [Source:NCBI gene;Acc:395174]
96. COL5A2 ENSGALG00000031112 18358 0.719 - - - - - 0.719 - - - - collagen type V alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2210]
97. EHD3 ENSGALG00000009086 14407 0.716 - - - - 0.716 - - - - - EH domain containing 3 [Source:NCBI gene;Acc:421306]
98. MALL ENSGALG00000023882 241 0.716 - - - - - 0.716 - - - - mal, T-cell differentiation protein like [Source:NCBI gene;Acc:421222]
99. NAT9 ENSGALG00000007723 2098 0.716 - - 0.716 - - - - - - - N-acetyltransferase 9 (putative), transcript variant X7
100. CLMP ENSGALG00000006507 8079 0.715 - - - - 0.715 - - - - - CXADR like membrane protein [Source:HGNC Symbol;Acc:HGNC:24039]

There are 29 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA