Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PDGFB

Gene Name Gene ID Reads Annotation
PDGFB ENSGALG00000012178 509 platelet-derived growth factor beta polypeptide [Source:NCBI gene;Acc:374128]











Genes with expression patterns similar to PDGFB

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PDGFB ENSGALG00000012178 509 9 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 platelet-derived growth factor beta polypeptide [Source:NCBI gene;Acc:374128]
2. PLK2 ENSGALG00000014725 1736 1.463 - - - - - - 0.750 0.713 - - polo like kinase 2 [Source:HGNC Symbol;Acc:HGNC:19699]
3. PPM1F ENSGALG00000039121 26 0.854 - - - - - - - 0.854 - - protein phosphatase, Mg2+/Mn2+ dependent 1F [Source:HGNC Symbol;Acc:HGNC:19388]
4. ASB13 ENSGALG00000008401 181 0.845 - - - - - - - 0.845 - - ankyrin repeat and SOCS box containing 13 [Source:NCBI gene;Acc:416691]
5. TP53I3 ENSGALG00000016502 178 0.841 - - - - - - - 0.841 - - tumor protein p53 inducible protein 3 [Source:HGNC Symbol;Acc:HGNC:19373]
6. VPAC2 VPAC2 45 0.831 - - - - - - - 0.831 - -
7. ARHGAP25 ENSGALG00000035194 74 0.827 - - - - - - - 0.827 - - Rho GTPase activating protein 25 [Source:NCBI gene;Acc:419516]
8. ITGB3 ENSGALG00000000379 1969 0.819 - - - - - - - 0.819 - - integrin subunit beta 3 [Source:NCBI gene;Acc:374209]
9. LMOD1 ENSGALG00000028721 81 0.817 - - - - - - - 0.817 - - leiomodin 1 [Source:HGNC Symbol;Acc:HGNC:6647]
10. PAK2 ENSGALG00000006426 283 0.812 - - - - - - - 0.812 - - p21 (RAC1) activated kinase 2 [Source:HGNC Symbol;Acc:HGNC:8591]
11. FKBP8 ENSGALG00000003357 942 0.81 - - - - - - - 0.810 - - FK506 binding protein 8 [Source:NCBI gene;Acc:420123]
12. ARPC1B ENSGALG00000032588 2407 0.809 - - - - - - - 0.809 - - actin related protein 2/3 complex subunit 1B [Source:NCBI gene;Acc:416490]
13. DZANK1 ENSGALG00000008731 120 0.803 - - - - - - - 0.803 - - double zinc ribbon and ankyrin repeat domains 1 [Source:NCBI gene;Acc:416722]
14. SPPL3 ENSGALG00000006979 3264 0.8 - - - - - - - 0.800 - - signal peptide peptidase like 3 [Source:HGNC Symbol;Acc:HGNC:30424]
15. FAM19A3 75 0.8 - - - - - - - 0.800 - - family with sequence similarity 19 member A3, C-C motif chemokine like, transcript variant X2
16. CNTN1 ENSGALG00000009523 158 0.799 - - - - - - - 0.799 - - contactin 1 [Source:NCBI gene;Acc:417786]
17. NXPH2 ENSGALG00000029083 353 0.794 - - - - - - - 0.794 - - neurexophilin 2 [Source:HGNC Symbol;Acc:HGNC:8076]
18. HOOK3 ENSGALG00000015390 992 0.792 - - - - - - - 0.792 - - hook microtubule tethering protein 3 [Source:HGNC Symbol;Acc:HGNC:23576]
19. SMO ENSGALG00000036114 6559 0.788 - - - - - - - 0.788 - - smoothened, frizzled class receptor [Source:HGNC Symbol;Acc:HGNC:11119]
20. LMO2 ENSGALG00000029892 4773 0.778 - - - - - - - 0.778 - - LIM domain only 2 [Source:NCBI gene;Acc:374129]
21. GFRA1 ENSGALG00000009173 371 0.777 - - - - - - - 0.777 - - GDNF family receptor alpha 1 [Source:NCBI gene;Acc:395994]
22. PACS2 1614 0.774 - - - - - - - 0.774 - - phosphofurin acidic cluster sorting protein 2, transcript variant X13
23. IRK1 IRK1 563 0.773 - - - - - - - 0.773 - -
24. MAPT ENSGALG00000000625 659 0.772 - - - - - - - 0.772 - - microtubule associated protein tau [Source:NCBI gene;Acc:426737]
25. PRSS35 ENSGALG00000015847 52 0.77 - - - - - - - 0.770 - - serine protease 35 [Source:HGNC Symbol;Acc:HGNC:21387]
26. ENSGALG00000019522 ENSGALG00000019522 122 0.77 - - - - - - - 0.770 - -
27. gga-mir-6599 ENSGALG00000028121 4746 0.768 - - - - - - - 0.768 - - gga-mir-6599 [Source:miRBase;Acc:MI0022544]
28. PER3 ENSGALG00000000573 590 0.767 - - - - - - - 0.767 - - period circadian clock 3 [Source:NCBI gene;Acc:419366]
29. TRAF-5 TRAF-5 102 0.767 - - - - - - - 0.767 - -
30. SMYD1 ENSGALG00000015935 75 0.766 - - - - - - - 0.766 - - SET and MYND domain containing 1 [Source:NCBI gene;Acc:373960]
31. ABCA8 ENSGALG00000021399 11 0.765 - - - - - - - 0.765 - - ATP binding cassette subfamily A member 8
32. HDAC11 ENSGALG00000005092 176 0.764 - - - - - - - 0.764 - - histone deacetylase 11 [Source:NCBI gene;Acc:415978]
33. KIAA0513 ENSGALG00000025938 46 0.764 - - - - - - - 0.764 - - KIAA0513 [Source:HGNC Symbol;Acc:HGNC:29058]
34. OSBPL8 ENSGALG00000010246 4565 0.762 - - - - - - - 0.762 - - oxysterol binding protein like 8 [Source:HGNC Symbol;Acc:HGNC:16396]
35. GGA.16412 GGA.16412 846 0.762 - - - - - - - 0.762 - -
36. ENSGALG00000023731 ENSGALG00000023731 149 0.762 - - - - - - - 0.762 - -
37. GFAP ENSGALG00000000909 21 0.762 - - - - - - - 0.762 - - glial fibrillary acidic protein [Source:HGNC Symbol;Acc:HGNC:4235]
38. INA ENSGALG00000028238 208 0.761 - - - - - - - 0.761 - - internexin neuronal intermediate filament protein alpha
39. ICOS ENSGALG00000008656 27 0.761 - - - - - - - 0.761 - - inducible T cell costimulator [Source:NCBI gene;Acc:424105]
40. SDR42E2 ENSGALG00000006964 57 0.76 - - - - - - - 0.760 - - short chain dehydrogenase/reductase family 42E, member 2 [Source:NCBI gene;Acc:416618]
41. USP53 ENSGALG00000011990 12 0.76 - - - - - - - 0.760 - - ubiquitin specific peptidase 53 [Source:HGNC Symbol;Acc:HGNC:29255]
42. VWCE ENSGALG00000043089 212 0.758 - - - - - - - 0.758 - - von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
43. APOAIV APOAIV 5 0.757 - - - - - - - 0.757 - -
44. GINS3 ENSGALG00000031209 32 0.757 - - - - - - - 0.757 - - GINS complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:25851]
45. CCDC96 9 0.757 - - - - - - - 0.757 - - coiled-coil domain containing 96
46. TMCO4 ENSGALG00000004081 31 0.757 - - - - - - - 0.757 - - transmembrane and coiled-coil domains 4 [Source:HGNC Symbol;Acc:HGNC:27393]
47. STAB1 21 0.757 - - - - - - - 0.757 - - stabilin 1, transcript variant X2
48. ENSGALG00000019053 ENSGALG00000019053 8 0.757 - - - - - - - 0.757 - -
49. PLB1 PLB1 101 0.757 - - - - - - - 0.757 - -
50. FOXP4 ENSGALG00000033497 13 0.757 - - - - - - - 0.757 - - forkhead box P4 [Source:HGNC Symbol;Acc:HGNC:20842]
51. KRT20 ENSGALG00000019716 11 0.757 - - - - - - - 0.757 - - keratin 20 [Source:NCBI gene;Acc:420045]
52. ERAP1 ENSGALG00000014684 713 0.756 - - - - - - 0.756 - - - endoplasmic reticulum aminopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:18173]
53. KLRD1 ENSGALG00000014722 27 0.756 - - - - - - - 0.756 - - killer cell lectin like receptor D1 [Source:NCBI gene;Acc:769174]
54. ELN 765 0.756 - - - - - - - 0.756 - - elastin, transcript variant X24
55. CD4 ENSGALG00000014477 19 0.755 - - - - - - - 0.755 - - CD4 molecule [Source:NCBI gene;Acc:395362]
56. PTPRD ENSGALG00000015058 37 0.755 - - - - - - - 0.755 - - protein tyrosine phosphatase, receptor type D [Source:HGNC Symbol;Acc:HGNC:9668]
57. C1QTNF6 ENSGALG00000027067 493 0.755 - - - - - - - 0.755 - - C1q and TNF related 6 [Source:HGNC Symbol;Acc:HGNC:14343]
58. PCDH10 ENSGALG00000009719 483 0.755 - - - - - - - 0.755 - - protocadherin 10 [Source:NCBI gene;Acc:408048]
59. CD200R1A CD200R1A 105 0.753 - - - - - - - 0.753 - -
60. PIP5K1A ENSGALG00000027372 137 0.753 - - - - - - - 0.753 - - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha [Source:NCBI gene;Acc:429983]
61. UEVLD ENSGALG00000006342 164 0.753 - - - - - - - 0.753 - - UEV and lactate/malate dehyrogenase domains [Source:NCBI gene;Acc:100858486]
62. DNAI2 ENSGALG00000004495 45 0.752 - - - - - - - 0.752 - - dynein axonemal intermediate chain 2
63. STXBP1 ENSGALG00000040003 157 0.751 - - - - - - - 0.751 - - syntaxin binding protein 1 [Source:NCBI gene;Acc:404293]
64. ANKRD44 ENSGALG00000007996 17 0.75 - - - - - - - 0.750 - - ankyrin repeat domain 44 [Source:NCBI gene;Acc:424055]
65. RIPK4 ENSGALG00000040189 102 0.749 - - - - - - - 0.749 - - receptor interacting serine/threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:496]
66. FURIN ENSGALG00000008341 2609 0.749 - - - - - - - 0.749 - - furin, paired basic amino acid cleaving enzyme [Source:NCBI gene;Acc:395457]
67. HTT ENSGALG00000015635 226 0.749 - - - - - - - 0.749 - - huntingtin [Source:HGNC Symbol;Acc:HGNC:4851]
68. C14H16ORF42 C14H16ORF42 263 0.749 - - - - - - - 0.749 - -
69. ABCC4 ENSGALG00000016896 154 0.748 - - - - - - - 0.748 - - ATP binding cassette subfamily C member 4 [Source:NCBI gene;Acc:418791]
70. AQP12 AQP12 11 0.748 - - - - - - - 0.748 - -
71. LOC417973 ENSGALG00000019325 9 0.745 - - - - - - - 0.745 - - uncharacterized LOC417973, transcript variant X1
72. ZIC3 ENSGALG00000031144 863 0.745 - - - - - - - 0.745 - - Zic family member 3 [Source:HGNC Symbol;Acc:HGNC:12874]
73. ENSGALG00000021882 ENSGALG00000021882 63 0.745 - - - - - - - 0.745 - -
74. NCOA2 ENSGALG00000036017 256 0.744 - - - - - - - 0.744 - - nuclear receptor coactivator 2, transcript variant X9
75. EPB41L4A ENSGALG00000000234 113 0.744 - - - - - - - 0.744 - - erythrocyte membrane protein band 4.1 like 4A [Source:HGNC Symbol;Acc:HGNC:13278]
76. SNX2 ENSGALG00000005337 590 0.743 - - - - - - - 0.743 - - sorting nexin 2 [Source:NCBI gene;Acc:426797]
77. ADCYAP1R1 ENSGALG00000005223 114 0.743 - - - - - - - 0.743 - - ADCYAP receptor type I [Source:NCBI gene;Acc:420386]
78. ETNK1 ENSGALG00000013205 18 0.743 - - 0.743 - - - - - - - ethanolamine kinase 1 [Source:HGNC Symbol;Acc:HGNC:24649]
79. LCA5L ENSGALG00000016125 99 0.743 - - - - - - - 0.743 - - LCA5L, lebercilin like [Source:HGNC Symbol;Acc:HGNC:1255]
80. ENPP3 ENSGALG00000037587 25 0.742 - - - - - - - 0.742 - - ectonucleotide pyrophosphatase/phosphodiesterase 3 [Source:HGNC Symbol;Acc:HGNC:3358]
81. RPRD2 ENSGALG00000014656 939 0.74 - - - - - - - 0.740 - - regulation of nuclear pre-mRNA domain containing 2 [Source:NCBI gene;Acc:425074]
82. IRG1 IRG1 21 0.739 - - - - - - - 0.739 - -
83. DUSP21 ENSGALG00000007765 171 0.738 - - - - - - - 0.738 - - dual specificity phosphatase 21 [Source:HGNC Symbol;Acc:HGNC:20476]
84. GFRA4 ENSGALG00000036589 2733 0.738 - - - - - - - 0.738 - - GDNF family receptor alpha 4 [Source:NCBI gene;Acc:395839]
85. SCUBE3 ENSGALG00000002675 12 0.736 - - 0.736 - - - - - - - signal peptide, CUB domain and EGF like domain containing 3 [Source:HGNC Symbol;Acc:HGNC:13655]
86. ENSGALG00000007032 ENSGALG00000007032 1 0.736 - - 0.736 - - - - - - -
87. SNORD47 SNORD47 61 0.736 - - 0.736 - - - - - - -
88. RCAN2 ENSGALG00000016709 8 0.736 - - 0.736 - - - - - - - regulator of calcineurin 2 [Source:HGNC Symbol;Acc:HGNC:3041]
89. CDC42EP3 ENSGALG00000010551 15 0.736 - - 0.736 - - - - - - - CDC42 effector protein 3 [Source:HGNC Symbol;Acc:HGNC:16943]
90. CHIA ENSGALG00000023760 1 0.736 - - 0.736 - - - - - - - chitinase, acidic [Source:NCBI gene;Acc:395072]
91. RUFY4 2 0.736 - - 0.736 - - - - - - - RUN and FYVE domain containing 4, transcript variant X5
92. NCF2 ENSGALG00000004700 9 0.736 - - 0.736 - - - - - - - neutrophil cytosolic factor 2 [Source:HGNC Symbol;Acc:HGNC:7661]
93. TDH ENSGALG00000016651 3 0.736 - - 0.736 - - - - - - - L-threonine dehydrogenase (pseudogene)
94. ANO10 ENSGALG00000042371 2 0.736 - - 0.736 - - - - - - - anoctamin 10 [Source:HGNC Symbol;Acc:HGNC:25519]
95. GFI1 ENSGALG00000043650 2 0.736 - - 0.736 - - - - - - - growth factor independent 1 transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4237]
96. ENSGALG00000012435 ENSGALG00000012435 3 0.736 - - 0.736 - - - - - - -
97. CTDSP1 ENSGALG00000027768 2 0.736 - - 0.736 - - - - - - - CTD small phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:21614]
98. HBEGF ENSGALG00000000949 15 0.736 - - 0.736 - - - - - - - heparin binding EGF like growth factor [Source:NCBI gene;Acc:395654]
99. SHOX2 ENSGALG00000039728 2 0.736 - - 0.736 - - - - - - - short stature homeobox 2 [Source:HGNC Symbol;Acc:HGNC:10854]
100. LPXN 133 0.735 - - - - - - - 0.735 - - leupaxin, transcript variant X4

There are 35 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA