Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PDE6D

Gene Name Gene ID Reads Annotation
PDE6D ENSGALG00000033062 20177 phosphodiesterase 6D [Source:HGNC Symbol;Acc:HGNC:8788]











Genes with expression patterns similar to PDE6D

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PDE6D ENSGALG00000033062 20177 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 phosphodiesterase 6D [Source:HGNC Symbol;Acc:HGNC:8788]
2. SELK SELK 15022 1.591 - - - - - - 0.810 0.781 - -
3. CDC5L ENSGALG00000016704 22893 1.442 - - - - 0.702 - - 0.740 - - cell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]
4. WBP4 ENSGALG00000016949 5858 0.898 - - - - 0.898 - - - - - WW domain binding protein 4 [Source:NCBI gene;Acc:418829]
5. ENSGALG00000026041 ENSGALG00000026041 13390 0.889 - - - - - - 0.889 - - -
6. MRPS21 ENSGALG00000000456 35298 0.887 - - - - 0.887 - - - - - mitochondrial ribosomal protein S21 [Source:NCBI gene;Acc:426666]
7. ATP5C1 53961 0.874 - - - - - - 0.874 - - - ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant X1
8. TFDP2 ENSGALG00000025759 13407 0.873 - - - - - - 0.873 - - - transcription factor Dp-2 [Source:NCBI gene;Acc:424780]
9. ENSGALG00000021397 ENSGALG00000021397 51155 0.858 - - - - 0.858 - - - - -
10. TPX2 ENSGALG00000006267 26087 0.853 - - - - - - - 0.853 - - TPX2, microtubule nucleation factor [Source:NCBI gene;Acc:395081]
11. EIF3E ENSGALG00000037067 36561 0.852 - - - - 0.852 - - - - - eukaryotic translation initiation factor 3 subunit E [Source:NCBI gene;Acc:420272]
12. ZIC1 ENSGALG00000040532 6543 0.846 - - - - 0.846 - - - - - Zic family member 1 [Source:NCBI gene;Acc:374103]
13. DDX21 ENSGALG00000004144 13105 0.825 - - - - 0.825 - - - - - DExD-box helicase 21 [Source:HGNC Symbol;Acc:HGNC:2744]
14. SEC61G ENSGALG00000037863 83362 0.824 - - - - 0.824 - - - - - Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
15. RPL15 ENSGALG00000011290 415571 0.818 - - - - 0.818 - - - - - ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. CLTC ENSGALG00000005139 22130 0.809 - - - - - - 0.809 - - - clathrin heavy chain [Source:NCBI gene;Acc:395272]
17. PKM ENSGALG00000001992 93960 0.807 - - - - 0.807 - - - - - pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
18. SEC23A ENSGALG00000010150 11679 0.805 - - - - - - 0.805 - - - Sec23 homolog A, coat complex II component [Source:HGNC Symbol;Acc:HGNC:10701]
19. ACAA2 ENSGALG00000031142 29220 0.805 - - - - - - 0.805 - - - acetyl-CoA acyltransferase 2 [Source:NCBI gene;Acc:426847]
20. PCBD1 ENSGALG00000027835 18019 0.803 - - - - - - 0.803 - - - pterin-4 alpha-carbinolamine dehydratase 1 [Source:NCBI gene;Acc:395729]
21. PSMB1 ENSGALG00000011174 40689 0.801 - - - - - - 0.801 - - - proteasome subunit beta 1 [Source:NCBI gene;Acc:421551]
22. FAM103A1 17380 0.796 - - - - - - - 0.796 - - family with sequence similarity 103 member A1, transcript variant X2
23. RRM2 ENSGALG00000016442 40375 0.794 - - - - - - 0.794 - - - ribonucleotide reductase regulatory subunit M2
24. MRPS10 ENSGALG00000009890 9157 0.792 - - - - - - - 0.792 - - mitochondrial ribosomal protein S10 [Source:NCBI gene;Acc:421385]
25. AP3S1 ENSGALG00000002341 12388 0.785 - - - - - - 0.785 - - - adaptor related protein complex 3 sigma 1 subunit [Source:NCBI gene;Acc:427389]
26. PHF14 ENSGALG00000038041 13687 0.781 - - - - - - 0.781 - - - PHD finger protein 14 [Source:NCBI gene;Acc:420583]
27. NDUFB9 ENSGALG00000042242 115459 0.78 - - - - 0.780 - - - - - NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
28. HK1 ENSGALG00000004222 10733 0.773 - - - - - - 0.773 - - - hexokinase 1 [Source:NCBI gene;Acc:373889]
29. SP3 ENSGALG00000031796 8997 0.771 - - - - - - - 0.771 - - Sp3 transcription factor [Source:NCBI gene;Acc:395302]
30. GABPA ENSGALG00000015763 11567 0.77 - - - - - - 0.770 - - - GA binding protein transcription factor subunit alpha [Source:NCBI gene;Acc:418478]
31. CLTA ENSGALG00000015326 26867 0.769 - - - - - - 0.769 - - - clathrin light chain A [Source:NCBI gene;Acc:427284]
32. NFS1 ENSGALG00000001568 7113 0.769 - - - - - - 0.769 - - - NFS1, cysteine desulfurase [Source:NCBI gene;Acc:419133]
33. KARS ENSGALG00000000907 51247 0.765 - - - - - - 0.765 - - - lysyl-tRNA synthetase [Source:NCBI gene;Acc:415885]
34. PEBP1 ENSGALG00000007403 77502 0.764 - - - - - - 0.764 - - - phosphatidylethanolamine binding protein 1 [Source:NCBI gene;Acc:416990]
35. NOC3L ENSGALG00000035667 7441 0.763 - - - - - - - 0.763 - - NOC3 like DNA replication regulator [Source:HGNC Symbol;Acc:HGNC:24034]
36. PHB ENSGALG00000038604 21632 0.759 - - - - - - 0.759 - - - prohibitin [Source:NCBI gene;Acc:419980]
37. UBR7 ENSGALG00000010842 16488 0.758 - - - - - - 0.758 - - - Gallus gallus ubiquitin protein ligase E3 component n-recognin 7 (putative) (UBR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001318461]
38. MAN2A1 ENSGALG00000000255 4543 0.755 - - - - - - - 0.755 - - mannosidase alpha class 2A member 1 [Source:HGNC Symbol;Acc:HGNC:6824]
39. ID2 ENSGALG00000035016 22120 0.755 - - - - - - 0.755 - - - inhibitor of DNA binding 2, HLH protein [Source:NCBI gene;Acc:395852]
40. PSMC2 ENSGALG00000008236 25980 0.75 - - - - - - 0.750 - - - proteasome 26S subunit, ATPase 2 [Source:NCBI gene;Acc:417716]
41. SPTBN1 ENSGALG00000029512 18579 0.75 - - - - - - 0.750 - - - spectrin beta, non-erythrocytic 1 [Source:NCBI gene;Acc:421216]
42. TKT ENSGALG00000005309 19801 0.75 - - - - - - 0.750 - - - transketolase [Source:HGNC Symbol;Acc:HGNC:11834]
43. PSMA6 ENSGALG00000010060 26517 0.749 - - - - - - 0.749 - - - proteasome subunit alpha 6 [Source:NCBI gene;Acc:423326]
44. PRPS1 ENSGALG00000004908 27994 0.748 - - - - - - 0.748 - - - phosphoribosyl pyrophosphate synthetase 1
45. RPL21 ENSGALG00000027035 244232 0.747 - - - - - - 0.747 - - - ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
46. WDFY2 ENSGALG00000017019 2384 0.747 - - - - - - - 0.747 - - WD repeat and FYVE domain containing 2 [Source:NCBI gene;Acc:770107]
47. PAX-7 PAX-7 3856 0.745 - - - - 0.745 - - - - -
48. CWC22 ENSGALG00000009001 5984 0.744 - - - - 0.744 - - - - - CWC22 spliceosome associated protein homolog [Source:NCBI gene;Acc:424123]
49. PSMB3 ENSGALG00000001597 22588 0.743 - - - - - - 0.743 - - - proteasome subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:9540]
50. FAM96B 14435 0.74 - - - - - - 0.740 - - - family with sequence similarity 96 member B
51. HNRNPR ENSGALG00000000814 32290 0.74 - - - - - - 0.740 - - - heterogeneous nuclear ribonucleoprotein R [Source:NCBI gene;Acc:419570]
52. ZEB1 ENSGALG00000007260 9277 0.738 - - - - 0.738 - - - - - zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
53. TNPO3 ENSGALG00000039420 5178 0.738 - - - - 0.738 - - - - - transportin 3 [Source:HGNC Symbol;Acc:HGNC:17103]
54. TALDO1 ENSGALG00000037195 30673 0.738 - - - - - - 0.738 - - - transaldolase 1 [Source:NCBI gene;Acc:423019]
55. TFAM ENSGALG00000002703 19330 0.738 - - - - - - - - - 0.738 transcription factor A, mitochondrial [Source:NCBI gene;Acc:373888]
56. UBE2G2 ENSGALG00000005667 12689 0.737 - - - - 0.737 - - - - - ubiquitin conjugating enzyme E2 G2 [Source:NCBI gene;Acc:424837]
57. PPIH ENSGALG00000004874 25558 0.737 - - - - - - - 0.737 - - peptidylprolyl isomerase H [Source:NCBI gene;Acc:419507]
58. PRMT3 ENSGALG00000003958 14160 0.736 - - - - - - 0.736 - - - protein arginine methyltransferase 3 [Source:NCBI gene;Acc:422975]
59. IGF2BP3 ENSGALG00000010961 81524 0.735 - - - - - - 0.735 - - - insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
60. TCP1 ENSGALG00000011637 73216 0.734 - - - - - - 0.734 - - - t-complex 1 [Source:NCBI gene;Acc:421586]
61. C15H12ORF49 C15H12ORF49 13250 0.734 - - - - 0.734 - - - - -
62. SPG21 ENSGALG00000007262 8050 0.731 - - - - 0.731 - - - - - SPG21, maspardin [Source:NCBI gene;Acc:415526]
63. UQCRC2 ENSGALG00000002490 23477 0.729 - - - - 0.729 - - - - - ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]
64. VPS8 ENSGALG00000006704 5419 0.729 - - - - 0.729 - - - - - VPS8, CORVET complex subunit [Source:HGNC Symbol;Acc:HGNC:29122]
65. RBM26 ENSGALG00000016910 13769 0.728 - - - - 0.728 - - - - - RNA binding motif protein 26 [Source:HGNC Symbol;Acc:HGNC:20327]
66. SEC63 ENSGALG00000015308 11596 0.726 - - - - 0.726 - - - - - SEC63 homolog, protein translocation regulator [Source:HGNC Symbol;Acc:HGNC:21082]
67. RAE1 ENSGALG00000007653 8930 0.726 - - - - 0.726 - - - - - ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
68. OPTC ENSGALG00000003554 3698 0.725 - - - - 0.725 - - - - - opticin [Source:NCBI gene;Acc:395130]
69. NSG1 ENSGALG00000015010 5829 0.725 - - - - 0.725 - - - - - neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
70. HTRA3 ENSGALG00000034673 512 0.723 - - - - 0.723 - - - - - HtrA serine peptidase 3 [Source:HGNC Symbol;Acc:HGNC:30406]
71. TSSC4 ENSGALG00000006530 10413 0.723 - - - - 0.723 - - - - - tumor suppressing subtransferable candidate 4 [Source:NCBI gene;Acc:423092]
72. NDST2 ENSGALG00000005107 4224 0.722 - - - - 0.722 - - - - - N-deacetylase and N-sulfotransferase 2, transcript variant X2
73. FAM98A ENSGALG00000010428 9585 0.722 - - - - 0.722 - - - - - family with sequence similarity 98 member A [Source:NCBI gene;Acc:421458]
74. SMNDC1 ENSGALG00000008561 14415 0.721 - - - - 0.721 - - - - - survival motor neuron domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16900]
75. MRPL46 ENSGALG00000006782 5033 0.72 - - - - 0.720 - - - - - mitochondrial ribosomal protein L46 [Source:NCBI gene;Acc:415499]
76. gga-mir-6584 ENSGALG00000028834 1481 0.719 - - - - 0.719 - - - - - gga-mir-6584 [Source:miRBase;Acc:MI0022404]
77. STK4 ENSGALG00000004098 11366 0.719 - - - - - - 0.719 - - - serine/threonine kinase 4 [Source:NCBI gene;Acc:419187]
78. SEC61A2 ENSGALG00000036300 4235 0.719 - - - - 0.719 - - - - - Gallus gallus Sec61 translocon alpha 2 subunit (SEC61A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001321620]
79. PSMD14 ENSGALG00000011128 13335 0.718 - - - - 0.718 - - - - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
80. HOXB3 ENSGALG00000043219 5198 0.718 - - - - 0.718 - - - - - homeobox B3 [Source:NCBI gene;Acc:395502]
81. RILPL2 ENSGALG00000003321 5632 0.718 - - - - 0.718 - - - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
82. PHKA1 ENSGALG00000004801 2510 0.718 - - - - 0.718 - - - - - phosphorylase kinase regulatory subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:8925]
83. MRPL22 ENSGALG00000003919 2760 0.717 - - - - 0.717 - - - - - mitochondrial ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:14480]
84. EIF3L ENSGALG00000012296 42627 0.717 - - - - 0.717 - - - - - eukaryotic translation initiation factor 3 subunit L [Source:NCBI gene;Acc:418033]
85. MAP1B ENSGALG00000014999 6288 0.717 - - - - 0.717 - - - - - microtubule associated protein 1B
86. MGST1 ENSGALG00000013098 17632 0.717 - - - - - - 0.717 - - - microsomal glutathione S-transferase 1 [Source:NCBI gene;Acc:418178]
87. TMEM39B ENSGALG00000003287 4125 0.716 - - - - 0.716 - - - - - transmembrane protein 39B [Source:NCBI gene;Acc:419650]
88. IBA57 ENSGALG00000005328 4362 0.716 - - - - 0.716 - - - - - IBA57 homolog, iron-sulfur cluster assembly [Source:NCBI gene;Acc:420396]
89. PPAPDC1B PPAPDC1B 6698 0.716 - - - - 0.716 - - - - -
90. ABCC1 ENSGALG00000006646 2596 0.716 - - - - 0.716 - - - - - ATP binding cassette subfamily C member 1 [Source:NCBI gene;Acc:395416]
91. HYOU1 ENSGALG00000007659 3555 0.715 - - - - 0.715 - - - - - hypoxia up-regulated 1 [Source:NCBI gene;Acc:428251]
92. RNF113A ENSGALG00000000538 3985 0.715 - - - - 0.715 - - - - - ring finger protein 113A [Source:NCBI gene;Acc:419956]
93. MED1 ENSGALG00000001708 9556 0.715 - - - - 0.715 - - - - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
94. RPS21 ENSGALG00000005338 293390 0.715 - - - - 0.715 - - - - - ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
95. MYEOV2 MYEOV2 5155 0.715 - - - - 0.715 - - - - -
96. EPB41L1 ENSGALG00000034171 3616 0.714 - - - - 0.714 - - - - - erythrocyte membrane protein band 4.1 like 1 [Source:HGNC Symbol;Acc:HGNC:3378]
97. NOL6 ENSGALG00000030730 7191 0.713 - - - - 0.713 - - - - - nucleolar protein 6
98. USP1 ENSGALG00000010957 8297 0.713 - - - - 0.713 - - - - - ubiquitin specific peptidase 1 [Source:NCBI gene;Acc:424685]
99. WHSC1L1 4065 0.713 - - - - 0.713 - - - - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X8
100. XRN2 ENSGALG00000008372 22164 0.713 - - - - 0.713 - - - - - 5'-3' exoribonuclease 2 [Source:NCBI gene;Acc:421236]

There are 36 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA