Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PCF11

Gene Name Gene ID Reads Annotation
PCF11 ENSGALG00000017249 4714 PCF11 cleavage and polyadenylation factor subunit, transcript variant X4











Genes with expression patterns similar to PCF11

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PCF11 ENSGALG00000017249 4714 8 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - - PCF11 cleavage and polyadenylation factor subunit, transcript variant X4
2. GARNL3 ENSGALG00000000847 3423 1.606 - - - - - - 0.788 0.818 - - GTPase activating Rap/RanGAP domain like 3 [Source:NCBI gene;Acc:417087]
3. INTS6L ENSGALG00000006157 2303 1.598 - - - - - - 0.764 0.834 - - integrator complex subunit 6 like, transcript variant X6
4. DDX42 ENSGALG00000000581 8780 1.584 - - - - - - 0.832 0.752 - - DEAD-box helicase 42 [Source:NCBI gene;Acc:419959]
5. TMEM14A ENSGALG00000019894 5279 1.558 - - - - - - 0.793 0.765 - - transmembrane protein 14A [Source:HGNC Symbol;Acc:HGNC:21076]
6. MYEOV2 MYEOV2 5155 1.557 - - - - - - 0.763 0.794 - -
7. CCDC132 CCDC132 2632 1.544 - - - - - - 0.785 0.759 - -
8. SRSF11 ENSGALG00000011305 10435 1.543 - - - - - - 0.766 0.777 - - serine and arginine rich splicing factor 11 [Source:NCBI gene;Acc:424714]
9. STRN3 ENSGALG00000040464 9045 1.536 - - - - - - 0.740 0.796 - - striatin 3 [Source:HGNC Symbol;Acc:HGNC:15720]
10. CASP6 ENSGALG00000012186 6639 1.523 - - - - - - 0.802 0.721 - - caspase 6 [Source:NCBI gene;Acc:395477]
11. ANAPC16 ENSGALG00000004410 18001 1.517 - - - - - - 0.800 0.717 - - anaphase promoting complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:26976]
12. NARFL ENSGALG00000005365 2668 1.515 - - - - - - 0.747 0.768 - - nuclear prelamin A recognition factor like [Source:NCBI gene;Acc:416535]
13. BLMH ENSGALG00000004259 36907 1.512 - - - - - - 0.722 0.790 - - bleomycin hydrolase [Source:NCBI gene;Acc:395996]
14. C1GALT1 ENSGALG00000009752 7148 1.511 - - - - - - 0.809 0.702 - - core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [Source:NCBI gene;Acc:420575]
15. SLC6A15 ENSGALG00000010992 2837 1.474 - - - - - - 0.764 0.710 - - solute carrier family 6 member 15 [Source:HGNC Symbol;Acc:HGNC:13621]
16. RYK ENSGALG00000006488 10533 1.466 - - - - - - 0.723 0.743 - - receptor-like tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:10481]
17. LPCAT3 ENSGALG00000014570 7919 1.46 - - - - - - 0.718 0.742 - - lysophosphatidylcholine acyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:30244]
18. DJ-1 DJ-1 13462 1.437 - - - - - - 0.706 0.731 - -
19. COX20 ENSGALG00000027440 5881 0.896 - - - - - - 0.896 - - - COX20, cytochrome c oxidase assembly factor [Source:NCBI gene;Acc:421493]
20. CTNNBL1 ENSGALG00000006817 6765 0.877 - - - - - - - 0.877 - - catenin beta like 1 [Source:HGNC Symbol;Acc:HGNC:15879]
21. FOXK2 ENSGALG00000001577 6346 0.873 - - - - - - 0.873 - - - forkhead box K2 [Source:HGNC Symbol;Acc:HGNC:6036]
22. TRNT1 ENSGALG00000017368 11932 0.871 - - - - - - 0.871 - - - tRNA nucleotidyl transferase 1 [Source:HGNC Symbol;Acc:HGNC:17341]
23. ENSGALG00000026433 ENSGALG00000026433 14463 0.87 - - - - - - 0.870 - - -
24. CAT ENSGALG00000030187 7534 0.867 - - - - - - 0.867 - - - catalase [Source:NCBI gene;Acc:423600]
25. TACC3 ENSGALG00000015709 17336 0.862 - - - - - - 0.862 - - - transforming acidic coiled-coil containing protein 3 [Source:NCBI gene;Acc:422899]
26. NIPSNAP3L ENSGALG00000027334 7514 0.861 - - - - - - 0.861 - - - nipsnap homolog 3-like
27. USP5 ENSGALG00000014525 21883 0.859 - - - - - - 0.859 - - - ubiquitin specific peptidase 5 [Source:HGNC Symbol;Acc:HGNC:12628]
28. COMMD5 ENSGALG00000008867 12173 0.857 - - - - - - 0.857 - - - COMM domain containing 5 [Source:NCBI gene;Acc:422376]
29. WWC3 ENSGALG00000034834 9392 0.856 - - - - - - 0.856 - - - WWC family member 3 [Source:HGNC Symbol;Acc:HGNC:29237]
30. PITPNB ENSGALG00000005654 21578 0.852 - - - - - - 0.852 - - - phosphatidylinositol transfer protein beta [Source:NCBI gene;Acc:416912]
31. MLLT10 ENSGALG00000007928 4022 0.851 - - - - - - 0.851 - - - MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:HGNC Symbol;Acc:HGNC:16063]
32. HMGN1 ENSGALG00000016067 17375 0.848 - - - - - - 0.848 - - - high mobility group nucleosome binding domain 1 [Source:NCBI gene;Acc:395999]
33. DLAT ENSGALG00000007904 3297 0.848 - - - - - - 0.848 - - - dihydrolipoamide S-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2896]
34. CHRAC1 ENSGALG00000040823 5695 0.846 - - - - - - - 0.846 - - chromatin accessibility complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:13544]
35. CALSYNTENIN-1 CALSYNTENIN-1 11195 0.846 - - - - - - 0.846 - - -
36. MRPS35 ENSGALG00000036730 6327 0.845 - - - - - - 0.845 - - - mitochondrial ribosomal protein S35 [Source:NCBI gene;Acc:419048]
37. PLEKHA5 ENSGALG00000013134 3656 0.841 - - - - - - 0.841 - - - pleckstrin homology domain containing A5 [Source:HGNC Symbol;Acc:HGNC:30036]
38. FBXO28 ENSGALG00000009331 2871 0.84 - - - - - - 0.840 - - - F-box protein 28 [Source:HGNC Symbol;Acc:HGNC:29046]
39. EMC3 ENSGALG00000003738 10363 0.84 - - - - - - - 0.840 - - ER membrane protein complex subunit 3 [Source:NCBI gene;Acc:415936]
40. CNEP1R1 ENSGALG00000029793 6536 0.839 - - - - - - 0.839 - - - CTD nuclear envelope phosphatase 1 regulatory subunit 1 [Source:NCBI gene;Acc:415736]
41. TRDMT1 ENSGALG00000008686 2663 0.839 - - - - - - 0.839 - - - tRNA aspartic acid methyltransferase 1 [Source:NCBI gene;Acc:420520]
42. CCNG2 ENSGALG00000010347 9122 0.837 - - - - - - - 0.837 - - cyclin G2 [Source:HGNC Symbol;Acc:HGNC:1593]
43. ZMAT2 ENSGALG00000041746 23601 0.836 - - - - - - 0.836 - - - zinc finger matrin-type 2 [Source:NCBI gene;Acc:427602]
44. SERINC1 ENSGALG00000014868 12484 0.836 - - - - - - 0.836 - - - serine incorporator 1 [Source:NCBI gene;Acc:421722]
45. C7orf50 ENSGALG00000004055 5786 0.835 - - - - - - 0.835 - - - chromosome 7 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:22421]
46. PWP1 ENSGALG00000012631 10536 0.833 - - - - - - 0.833 - - - PWP1 homolog, endonuclein [Source:NCBI gene;Acc:418066]
47. NIPA2 ENSGALG00000016737 3792 0.832 - - - - - - - 0.832 - - NIPA magnesium transporter 2 [Source:NCBI gene;Acc:418680]
48. ARL5A ENSGALG00000041099 4592 0.832 - - - - - - 0.832 - - - ADP ribosylation factor like GTPase 5A [Source:HGNC Symbol;Acc:HGNC:696]
49. POLR2H ENSGALG00000008534 21521 0.831 - - - - - - 0.831 - - - RNA polymerase II subunit H [Source:NCBI gene;Acc:424954]
50. MRPL23 ENSGALG00000006561 13737 0.83 - - - - - - 0.830 - - - mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:374255]
51. SREK1 ENSGALG00000014775 13961 0.83 - - - - - - - 0.830 - - splicing regulatory glutamic acid and lysine rich protein 1, transcript variant X3
52. XPR1 ENSGALG00000003893 5642 0.826 - - - - - - 0.826 - - - xenotropic and polytropic retrovirus receptor 1 [Source:HGNC Symbol;Acc:HGNC:12827]
53. ARFIP1 ENSGALG00000041361 7351 0.825 - - - - - - 0.825 - - - ADP ribosylation factor interacting protein 1 [Source:NCBI gene;Acc:770884]
54. ZC3H7A ENSGALG00000003143 7114 0.824 - - - - - - 0.824 - - - zinc finger CCCH-type containing 7A [Source:HGNC Symbol;Acc:HGNC:30959]
55. GLI2 ENSGALG00000011630 3347 0.822 - - - - - - - 0.822 - - GLI family zinc finger 2 [Source:NCBI gene;Acc:395956]
56. RHOGL ENSGALG00000005464, ENSGALG00000005475 5791 0.822 - - - - - - 0.822 - - - rho-related GTP-binding protein RhoG-like [Source:NCBI gene;Acc:422207]
57. CCDC53 CCDC53 3732 0.822 - - - - - - 0.822 - - -
58. RDM1 ENSGALG00000000243 3388 0.822 - - - - - - 0.822 - - - RAD52 motif containing 1 [Source:NCBI gene;Acc:395228]
59. PGRMC1 ENSGALG00000020260 19059 0.821 - - - - - - 0.821 - - - progesterone receptor membrane component 1 [Source:NCBI gene;Acc:772196]
60. NDUFS8 ENSGALG00000040173 24745 0.821 - - - - - - 0.821 - - - NADH:ubiquinone oxidoreductase core subunit S8 [Source:HGNC Symbol;Acc:HGNC:7715]
61. PDP1 ENSGALG00000034876 2965 0.82 - - - - - - 0.820 - - - pyruvate dehyrogenase phosphatase catalytic subunit 1 [Source:NCBI gene;Acc:428372]
62. BRD1 ENSGALG00000029379 6047 0.82 - - - - - - - 0.820 - - bromodomain containing 1 [Source:NCBI gene;Acc:417731]
63. THYN1 ENSGALG00000001529 9423 0.82 - - - - - - 0.820 - - - thymocyte nuclear protein 1 [Source:NCBI gene;Acc:374161]
64. POLR3F ENSGALG00000008749 5645 0.819 - - - - - - 0.819 - - - RNA polymerase III subunit F [Source:NCBI gene;Acc:416723]
65. TRABD ENSGALG00000030705 6577 0.819 - - - - - - 0.819 - - - TraB domain containing [Source:NCBI gene;Acc:417746]
66. PCNP ENSGALG00000015330 15750 0.816 - - - - - - 0.816 - - - PEST proteolytic signal containing nuclear protein [Source:NCBI gene;Acc:418398]
67. MTFR1L ENSGALG00000000998 3457 0.816 - - - - - - 0.816 - - - mitochondrial fission regulator 1 like [Source:HGNC Symbol;Acc:HGNC:28836]
68. AATF ENSGALG00000005420 6501 0.816 - - - - - - 0.816 - - - apoptosis antagonizing transcription factor [Source:NCBI gene;Acc:417653]
69. ASH2L ENSGALG00000003233 4814 0.814 - - - - - - - 0.814 - - ASH2 like, histone lysine methyltransferase complex subunit [Source:NCBI gene;Acc:426774]
70. ILK ENSGALG00000031642 11321 0.814 - - - - - - 0.814 - - - integrin linked kinase [Source:NCBI gene;Acc:374018]
71. ENSGALG00000021405 ENSGALG00000021405 1380 0.814 - - - - - - - 0.814 - -
72. TAF2 ENSGALG00000043193 6311 0.814 - - - - - - - 0.814 - - TATA-box binding protein associated factor 2 [Source:NCBI gene;Acc:428389]
73. NEK7 ENSGALG00000002216 4532 0.813 - - - - - - 0.813 - - - NIMA related kinase 7 [Source:NCBI gene;Acc:424350]
74. TOMM22 ENSGALG00000019316 27323 0.812 - - - - - - 0.812 - - - translocase of outer mitochondrial membrane 22 [Source:HGNC Symbol;Acc:HGNC:18002]
75. ZCCHC8 ENSGALG00000004486 3201 0.811 - - - - - - 0.811 - - - zinc finger CCHC-type containing 8 [Source:NCBI gene;Acc:416862]
76. GABPB1 ENSGALG00000023440 5676 0.811 - - - - - - - 0.811 - - GA binding protein transcription factor beta subunit 1 [Source:NCBI gene;Acc:415453]
77. FBXW7 ENSGALG00000010103 5982 0.811 - - - - - - 0.811 - - - F-box and WD repeat domain containing 7 [Source:HGNC Symbol;Acc:HGNC:16712]
78. WDR12 ENSGALG00000008470 7654 0.811 - - - - - - 0.811 - - - WD repeat domain 12 [Source:HGNC Symbol;Acc:HGNC:14098]
79. GPX8 ENSGALG00000026704 4497 0.81 - - - - - - 0.810 - - - glutathione peroxidase 8 (putative) [Source:HGNC Symbol;Acc:HGNC:33100]
80. ADIPOR2 ENSGALG00000035533 6523 0.81 - - - - - - 0.810 - - - adiponectin receptor 2 [Source:NCBI gene;Acc:418155]
81. B4GALNT4 ENSGALG00000004250 2150 0.809 - - - - - - 0.809 - - - beta-1,4-N-acetyl-galactosaminyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:26315]
82. COG4 ENSGALG00000002603 4485 0.809 - - - - - - 0.809 - - - component of oligomeric golgi complex 4 [Source:NCBI gene;Acc:415681]
83. TSPAN13 ENSGALG00000027240 8999 0.809 - - - - - - 0.809 - - - tetraspanin 13 [Source:NCBI gene;Acc:420595]
84. MIB1 ENSGALG00000014974 3583 0.809 - - - - - - - 0.809 - - mindbomb E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21086]
85. CDC16 ENSGALG00000016816 2162 0.808 - - - - - - 0.808 - - - cell division cycle 16 [Source:NCBI gene;Acc:418735]
86. USP47 ENSGALG00000005569 4813 0.808 - - - - - - 0.808 - - - ubiquitin specific peptidase 47 [Source:NCBI gene;Acc:423032]
87. UXS1 ENSGALG00000016801 3724 0.807 - - - - - - 0.807 - - - UDP-glucuronate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:17729]
88. WIPI2 ENSGALG00000004557 4961 0.807 - - - - - - - 0.807 - - WD repeat domain, phosphoinositide interacting 2 [Source:NCBI gene;Acc:416481]
89. C1H2ORF49 ENSGALG00000016796 2976 0.807 - - - - - - 0.807 - - - chromosome 1 open reading frame, human C2orf49 [Source:NCBI gene;Acc:418725]
90. DPP9 ENSGALG00000004200 4515 0.807 - - - - - - 0.807 - - - dipeptidyl peptidase 9 [Source:HGNC Symbol;Acc:HGNC:18648]
91. TAF13 ENSGALG00000015185 11410 0.806 - - - - - - - 0.806 - - TATA-box binding protein associated factor 13 [Source:NCBI gene;Acc:418365]
92. DAD1 ENSGALG00000035626 32604 0.806 - - - - - - - 0.806 - - defender against cell death 1 [Source:NCBI gene;Acc:395343]
93. DNTTIP2 4528 0.805 - - - - - - 0.805 - - - deoxynucleotidyltransferase, terminal, interacting protein 2, transcript variant X3
94. GHITM ENSGALG00000021262 7159 0.805 - - - - - - 0.805 - - - growth hormone inducible transmembrane protein [Source:NCBI gene;Acc:423621]
95. FBXO33 ENSGALG00000010192 2917 0.804 - - - - - - 0.804 - - - F-box protein 33 [Source:HGNC Symbol;Acc:HGNC:19833]
96. TBC1D12 ENSGALG00000034044 5588 0.804 - - - - - - 0.804 - - - TBC1 domain family member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
97. TBPL1 ENSGALG00000013981 3710 0.804 - - - - - - 0.804 - - - TATA-box binding protein like 1 [Source:NCBI gene;Acc:395517]
98. SRSF5 ENSGALG00000009421 8502 0.803 - - - - - - - 0.803 - - serine and arginine rich splicing factor 5 [Source:NCBI gene;Acc:423258]
99. NNT ENSGALG00000014869 8496 0.803 - - - - - - 0.803 - - - nicotinamide nucleotide transhydrogenase [Source:HGNC Symbol;Acc:HGNC:7863]
100. SIAH1 ENSGALG00000003916 6682 0.802 - - - - - - - 0.802 - - siah E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:10857]

There are 439 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA