Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PBRM1

Gene Name Gene ID Reads Annotation
PBRM1 ENSGALG00000037455 6450 polybromo 1 [Source:NCBI gene;Acc:396074]











Genes with expression patterns similar to PBRM1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PBRM1 ENSGALG00000037455 6450 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 polybromo 1 [Source:NCBI gene;Acc:396074]
2. TIMMDC1 ENSGALG00000024480 9337 1.78 - - - - 0.984 - - 0.796 - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
3. NUP88 ENSGALG00000032280 9847 1.77 - - - - 0.959 - 0.811 - - - nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]
4. SRGAP1 ENSGALG00000009825 6753 1.769 - - - - 0.965 - 0.804 - - - SLIT-ROBO Rho GTPase activating protein 1 [Source:NCBI gene;Acc:417821]
5. ZYX ENSGALG00000014688 8686 1.762 - - - - 0.959 - 0.803 - - - zyxin [Source:NCBI gene;Acc:418300]
6. KIF11 ENSGALG00000030597 5528 1.754 - - - - 0.982 - - 0.772 - - kinesin family member 11 [Source:NCBI gene;Acc:423809]
7. CDCA7 ENSGALG00000040833 7484 1.734 - - - - 0.970 - - - - 0.764 cell division cycle associated 7 [Source:HGNC Symbol;Acc:HGNC:14628]
8. RBM34 ENSGALG00000029915 5618 1.723 - - - - 0.985 - 0.738 - - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
9. RALGDS ENSGALG00000003412 4478 1.722 - - - - 0.984 - - 0.738 - - ral guanine nucleotide dissociation stimulator, transcript variant X10
10. LGALS1 ENSGALG00000012420 13993 1.716 - - - - 0.958 - - - - 0.758 galectin 1 [Source:NCBI gene;Acc:396491]
11. UPF3B ENSGALG00000008618 12350 1.71 - - - - 0.976 - 0.734 - - - UPF3B, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]
12. SLMO2 SLMO2 9207 1.704 - - - - 0.967 - 0.737 - - -
13. NDUFV1 ENSGALG00000042809 6222 1.694 - - - - 0.987 - - 0.707 - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:NCBI gene;Acc:430210]
14. SLC30A4 ENSGALG00000005703 5696 1.684 - - - - 0.968 - 0.716 - - - solute carrier family 30 member 4 [Source:NCBI gene;Acc:415444]
15. SREK1 ENSGALG00000014775 13961 1.668 - - - - 0.942 - - 0.726 - - splicing regulatory glutamic acid and lysine rich protein 1, transcript variant X3
16. UQCRH ENSGALG00000017380 55734 1.641 - - - - 0.883 - 0.758 - - - ubiquinol-cytochrome c reductase hinge protein [Source:NCBI gene;Acc:771939]
17. MAD2L1 ENSGALG00000011967 16125 1.571 - - - - 0.865 - 0.706 - - - mitotic arrest deficient 2 like 1 [Source:NCBI gene;Acc:422675]
18. NCOR1 ENSGALG00000004477 4534 1.568 - - - - - - 0.836 0.732 - - nuclear receptor corepressor 1 [Source:HGNC Symbol;Acc:HGNC:7672]
19. PCM1 ENSGALG00000013602 6347 1.552 - - - - - - - 0.752 - 0.800 pericentriolar material 1 [Source:NCBI gene;Acc:395204]
20. MOB3A ENSGALG00000031729 9690 1.492 - - - - 0.738 - - 0.754 - - MOB kinase activator 3A [Source:HGNC Symbol;Acc:HGNC:29802]
21. ENSGALG00000028938 ENSGALG00000028938 18616 1.482 - - - - 0.745 - - 0.737 - -
22. SYNCRIP ENSGALG00000015830 30555 1.465 - - - - 0.730 - - - - 0.735 synaptotagmin binding cytoplasmic RNA interacting protein [Source:NCBI gene;Acc:421831]
23. GPN3 ENSGALG00000003807 6320 1.465 - - - - - - 0.715 0.750 - - GPN-loop GTPase 3 [Source:HGNC Symbol;Acc:HGNC:30186]
24. RIT1 ENSGALG00000014647 7174 1.448 - - - - - - 0.737 0.711 - - Ras like without CAAX 1 [Source:NCBI gene;Acc:425068]
25. FN3KRP ENSGALG00000028979 4160 1.446 - - - - - - 0.722 0.724 - - fructosamine 3 kinase related protein [Source:NCBI gene;Acc:417336]
26. SNX14 ENSGALG00000015831 2554 0.988 - - - - 0.988 - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
27. MRPL16 ENSGALG00000029419 8033 0.987 - - - - 0.987 - - - - - mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:HGNC:14476]
28. RAD54B ENSGALG00000043597 1699 0.986 - - - - 0.986 - - - - - RAD54 homolog B [Source:NCBI gene;Acc:395449]
29. PITHD1 ENSGALG00000003986 11470 0.985 - - - - 0.985 - - - - - PITH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25022]
30. ASAP2 ENSGALG00000016419 1393 0.985 - - - - 0.985 - - - - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
31. PTK2B ENSGALG00000016564 406 0.985 - - - - 0.985 - - - - - protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
32. BRF1 ENSGALG00000011705 3406 0.985 - - - - 0.985 - - - - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
33. LZIC ENSGALG00000002616 9052 0.985 - - - - 0.985 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
34. ANKRD9 ENSGALG00000011376 525 0.984 - - - - 0.984 - - - - - ankyrin repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20096]
35. PREP2 PREP2 238 0.984 - - - - 0.984 - - - - -
36. PHTF1 ENSGALG00000001845 3276 0.984 - - - - 0.984 - - - - - putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:8939]
37. GTF2H1 ENSGALG00000042340 1553 0.984 - - - - 0.984 - - - - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
38. ENSGALG00000006569 ENSGALG00000006569 2169 0.984 - - - - 0.984 - - - - -
39. SMG7 ENSGALG00000004667 707 0.984 - - - - 0.984 - - - - - SMG7, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]
40. RAMP3 ENSGALG00000037246 1187 0.984 - - - - 0.984 - - - - - receptor activity modifying protein 3 [Source:NCBI gene;Acc:420786]
41. HSF2 ENSGALG00000038420 5259 0.984 - - - - 0.984 - - - - - heat shock transcription factor 2 [Source:NCBI gene;Acc:421724]
42. SDCBP ENSGALG00000015436 1228 0.984 - - - - 0.984 - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
43. SAP30 ENSGALG00000036252 2032 0.984 - - - - 0.984 - - - - - Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]
44. ETS1 ENSGALG00000001143 7284 0.983 - - - - 0.983 - - - - - v-ets avian erythroblastosis virus E26 oncogene homolog 1 [Source:NCBI gene;Acc:396235]
45. PRDM4 ENSGALG00000012619 876 0.983 - - - - 0.983 - - - - - PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
46. RBM6 ENSGALG00000035578 1690 0.983 - - - - 0.983 - - - - - RNA binding motif protein 6 [Source:NCBI gene;Acc:415931]
47. MED8 ENSGALG00000009993 3095 0.983 - - - - 0.983 - - - - - mediator complex subunit 8 [Source:NCBI gene;Acc:424565]
48. SYNE1 ENSGALG00000013505 2324 0.982 - - - - 0.982 - - - - - spectrin repeat containing, nuclear envelope 1, transcript variant X3
49. DGKZ ENSGALG00000008380 5389 0.982 - - - - 0.982 - - - - - diacylglycerol kinase zeta [Source:NCBI gene;Acc:423197]
50. BAHD1 ENSGALG00000033675 1779 0.982 - - - - 0.982 - - - - - bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29153]
51. MED21 ENSGALG00000027435 5766 0.982 - - - - 0.982 - - - - - mediator complex subunit 21 [Source:HGNC Symbol;Acc:HGNC:11473]
52. YARS ENSGALG00000003563 11093 0.982 - - - - 0.982 - - - - - tyrosyl-tRNA synthetase [Source:NCBI gene;Acc:419666]
53. EDNRA ENSGALG00000010013 2472 0.982 - - - - 0.982 - - - - - endothelin receptor type A [Source:NCBI gene;Acc:373908]
54. PSMG3 ENSGALG00000004203 11240 0.981 - - - - 0.981 - - - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
55. TMF1 ENSGALG00000013408 3344 0.981 - - - - 0.981 - - - - - TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:11870]
56. WDR92 ENSGALG00000008760 3934 0.98 - - - - 0.980 - - - - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
57. ACAT2 ENSGALG00000011659 12825 0.979 - - - - 0.979 - - - - - acetyl-CoA acetyltransferase 2 [Source:NCBI gene;Acc:421587]
58. FNDC5 ENSGALG00000003567 3328 0.979 - - - - 0.979 - - - - - Gallus gallus fibronectin type III domain containing 5 (FNDC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001318986]
59. IARS2 ENSGALG00000009566 4599 0.979 - - - - 0.979 - - - - - isoleucyl-tRNA synthetase 2, mitochondrial [Source:NCBI gene;Acc:421346]
60. STARD3NL ENSGALG00000033038 4851 0.979 - - - - 0.979 - - - - - STARD3 N-terminal like [Source:HGNC Symbol;Acc:HGNC:19169]
61. CDH3 5050 0.978 - - - - 0.978 - - - - - cadherin 3
62. ENSGALG00000027854 ENSGALG00000027854 5007 0.978 - - - - 0.978 - - - - -
63. CDKN1B ENSGALG00000022980 4606 0.978 - - - - 0.978 - - - - - cyclin dependent kinase inhibitor 1B [Source:NCBI gene;Acc:374106]
64. COQ5 ENSGALG00000007185 5614 0.978 - - - - 0.978 - - - - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
65. LOC426385 ENSGALG00000026301 2703 0.978 - - - - 0.978 - - - - - serine/threonine kinase 35-like, transcript variant X2
66. LMAN2 ENSGALG00000033232 11740 0.978 - - - - 0.978 - - - - - lectin, mannose binding 2 [Source:HGNC Symbol;Acc:HGNC:16986]
67. C9orf85 ENSGALG00000026001 4110 0.978 - - - - 0.978 - - - - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
68. FUNDC2 ENSGALG00000029585 9334 0.975 - - - - 0.975 - - - - - FUN14 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24925]
69. LGMN ENSGALG00000010811 7401 0.975 - - - - 0.975 - - - - - legumain [Source:HGNC Symbol;Acc:HGNC:9472]
70. MARC1 ENSGALG00000009453 5675 0.975 - - - - 0.975 - - - - - mitochondrial amidoxime reducing component 1 [Source:NCBI gene;Acc:428563]
71. TSPO2 ENSGALG00000003212 5141 0.975 - - - - 0.975 - - - - - translocator protein 2 [Source:HGNC Symbol;Acc:HGNC:21256]
72. SPRED1 ENSGALG00000028203 6520 0.974 - - - - 0.974 - - - - - sprouty related EVH1 domain containing 1 [Source:NCBI gene;Acc:423292]
73. UTP6 ENSGALG00000003260 4909 0.974 - - - - 0.974 - - - - - UTP6, small subunit processome component [Source:NCBI gene;Acc:417405]
74. MEF2BNB MEF2BNB 5578 0.973 - - - - 0.973 - - - - -
75. DLD ENSGALG00000007931 11011 0.973 - - - - 0.973 - - - - - dihydrolipoamide dehydrogenase [Source:NCBI gene;Acc:417699]
76. WNK2 ENSGALG00000038850 4712 0.973 - - - - 0.973 - - - - - WNK lysine deficient protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14542]
77. SFXN5 ENSGALG00000016094 2678 0.973 - - - - 0.973 - - - - - sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
78. DLL1 ENSGALG00000011182 1613 0.972 - - - - 0.972 - - - - - delta like canonical Notch ligand 1 [Source:NCBI gene;Acc:395820]
79. MYBL2 ENSGALG00000003503 15875 0.969 - - - - 0.969 - - - - - MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
80. CCDC132 CCDC132 2632 0.969 - - - - 0.969 - - - - -
81. HARS ENSGALG00000035080 11602 0.969 - - - - 0.969 - - - - - histidyl-tRNA synthetase [Source:NCBI gene;Acc:416132]
82. PSMD3 ENSGALG00000033162 25615 0.968 - - - - 0.968 - - - - - proteasome 26S subunit, non-ATPase 3 [Source:NCBI gene;Acc:426133]
83. TAF3 ENSGALG00000006731 15569 0.968 - - - - 0.968 - - - - - TATA-box binding protein associated factor 3 [Source:NCBI gene;Acc:419107]
84. RHOT1 ENSGALG00000003397 5149 0.968 - - - - 0.968 - - - - - ras homolog family member T1 [Source:NCBI gene;Acc:417410]
85. DENR ENSGALG00000003795 30805 0.967 - - - - 0.967 - - - - - density regulated re-initiation and release factor [Source:NCBI gene;Acc:771794]
86. ZC3H6 ENSGALG00000008269 10353 0.967 - - - - 0.967 - - - - - zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:421230]
87. GATC ENSGALG00000007195 8610 0.963 - - - - 0.963 - - - - - glutamyl-tRNA amidotransferase subunit C, transcript variant X2
88. SPEN ENSGALG00000036932 9688 0.962 - - - - 0.962 - - - - - spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
89. NEK6 ENSGALG00000001118 20333 0.961 - - - - 0.961 - - - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
90. MYO9A ENSGALG00000033618 4505 0.959 - - - - 0.959 - - - - - myosin IXA, transcript variant X10
91. PRCC ENSGALG00000040696 9346 0.959 - - - - 0.959 - - - - - proline rich mitotic checkpoint control factor [Source:HGNC Symbol;Acc:HGNC:9343]
92. SH3BGR ENSGALG00000016127 2561 0.959 - - - - 0.959 - - - - - SH3 domain binding glutamate rich protein
93. TM9SF3 ENSGALG00000005534 15290 0.956 - - - - 0.956 - - - - - transmembrane 9 superfamily member 3
94. SRP19 ENSGALG00000000218 14207 0.954 - - - - 0.954 - - - - - signal recognition particle 19 [Source:HGNC Symbol;Acc:HGNC:11300]
95. RAD23B ENSGALG00000015540 10828 0.953 - - - - 0.953 - - - - - RAD23 homolog B, nucleotide excision repair protein [Source:HGNC Symbol;Acc:HGNC:9813]
96. PRKCI ENSGALG00000009364 11574 0.953 - - - - 0.953 - - - - - protein kinase C iota [Source:NCBI gene;Acc:424991]
97. Mar-05 Mar-05 6330 0.953 - - - - 0.953 - - - - -
98. COMMD2 ENSGALG00000028001 18981 0.952 - - - - 0.952 - - - - - COMM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24993]
99. HDAC8 ENSGALG00000004825 12066 0.95 - - - - 0.950 - - - - - histone deacetylase 8, transcript variant X2
100. VMA21 ENSGALG00000009065 6432 0.95 - - - - 0.950 - - - - - VMA21, vacuolar ATPase assembly factor [Source:NCBI gene;Acc:422385]

There are 454 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA