Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PAPD4

Gene Name Gene ID Reads Annotation
PAPD4 1496 poly(A) RNA polymerase D4, non-canonical, transcript variant X5











Genes with expression patterns similar to PAPD4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PAPD4 1496 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 poly(A) RNA polymerase D4, non-canonical, transcript variant X5
2. METTL21A ENSGALG00000008493 3188 1.426 - - - - - - 0.723 0.703 - - methyltransferase like 21A [Source:NCBI gene;Acc:424094]
3. MGAT4B ENSGALG00000005924 2663 0.797 - - - - - - 0.797 - - - alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B [Source:HGNC Symbol;Acc:HGNC:7048]
4. FARP1 ENSGALG00000016886 13132 0.789 - - - - - - 0.789 - - - FERM, ARH/RhoGEF and pleckstrin domain protein 1 [Source:NCBI gene;Acc:418781]
5. SLC35F6 ENSGALG00000016589 5172 0.788 - - - - - - 0.788 - - - solute carrier family 35 member F6 [Source:HGNC Symbol;Acc:HGNC:26055]
6. CABIN1 ENSGALG00000006363 4415 0.783 - - - - - - 0.783 - - - calcineurin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:24187]
7. TBC1D15 ENSGALG00000010190 4417 0.781 - - - - - - 0.781 - - - TBC1 domain family member 15 [Source:NCBI gene;Acc:417857]
8. CHN1 ENSGALG00000009293 6415 0.779 - - - - - - 0.779 - - - chimerin 1 [Source:NCBI gene;Acc:429021]
9. ITGB1 ENSGALG00000007145 19551 0.771 - - - - - - 0.771 - - - integrin subunit beta 1 [Source:NCBI gene;Acc:374058]
10. PANK4 ENSGALG00000001165 2356 0.771 - - - - - - 0.771 - - - pantothenate kinase 4 [Source:NCBI gene;Acc:100736561]
11. TRAF7 ENSGALG00000005767 4615 0.77 - - - - - - 0.770 - - - TNF receptor associated factor 7 [Source:NCBI gene;Acc:416555]
12. MTCH2 ENSGALG00000036196 15097 0.77 - - - - - - 0.770 - - - mitochondrial carrier 2 [Source:NCBI gene;Acc:395597]
13. MED17 ENSGALG00000017218 5821 0.769 - - - - - - 0.769 - - - mediator complex subunit 17 [Source:NCBI gene;Acc:419000]
14. LEPREL4 LEPREL4 5609 0.768 - - - - - - 0.768 - - -
15. KDM6A ENSGALG00000016217 2302 0.767 - - - - - - - 0.767 - - lysine demethylase 6A, transcript variant X14
16. CLINT1 ENSGALG00000003702 11269 0.763 - - - - - - 0.763 - - - clathrin interactor 1 [Source:NCBI gene;Acc:416240]
17. GPC4 ENSGALG00000006080 56498 0.759 - - - - - - 0.759 - - - glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
18. PREP ENSGALG00000015405 17050 0.758 - - - - - - 0.758 - - - prolyl endopeptidase [Source:NCBI gene;Acc:421785]
19. MPDZ ENSGALG00000005846 3179 0.757 - - - - - - 0.757 - - - multiple PDZ domain protein [Source:NCBI gene;Acc:427360]
20. LIMD1 ENSGALG00000035623 7282 0.757 - - - - - - 0.757 - - - LIM domains containing 1 [Source:HGNC Symbol;Acc:HGNC:6612]
21. C11orf24 ENSGALG00000020488 4069 0.755 - - - - - - 0.755 - - - chromosome 11 open reading frame 24, transcript variant X10
22. PSMB2 ENSGALG00000026421 51885 0.748 - - - - - - 0.748 - - - proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
23. HAUS2 ENSGALG00000009111 5323 0.748 - - - - - - 0.748 - - - HAUS augmin like complex subunit 2 [Source:NCBI gene;Acc:423237]
24. CENPK ENSGALG00000014753 12414 0.747 - - - - - - 0.747 - - - centromere protein K [Source:NCBI gene;Acc:427162]
25. HAPLN1 ENSGALG00000015627 14942 0.747 - - - - - - 0.747 - - - hyaluronan and proteoglycan link protein 1 [Source:NCBI gene;Acc:396475]
26. PTEN ENSGALG00000003634 5048 0.746 - - - - - - 0.746 - - - phosphatase and tensin homolog [Source:HGNC Symbol;Acc:HGNC:9588]
27. PPFIA1 ENSGALG00000035774 5258 0.744 - - - - - - 0.744 - - - PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
28. MLST8 ENSGALG00000005878 8116 0.744 - - - - - - 0.744 - - - MTOR associated protein, LST8 homolog [Source:HGNC Symbol;Acc:HGNC:24825]
29. PTGR1 ENSGALG00000015702 3667 0.744 - - - - - - 0.744 - - - prostaglandin reductase 1 [Source:NCBI gene;Acc:427337]
30. EHD3 ENSGALG00000009086 14407 0.742 - - - - - - 0.742 - - - EH domain containing 3 [Source:NCBI gene;Acc:421306]
31. LCLAT1 ENSGALG00000009056 5207 0.741 - - - - - - 0.741 - - - lysocardiolipin acyltransferase 1 [Source:NCBI gene;Acc:421303]
32. PTTG1IP ENSGALG00000005675, ENSGALG00000009044 10949 0.741 - - - - - - 0.741 - - - pituitary tumor-transforming 1 interacting protein, transcript variant X1
33. EIF2B1 ENSGALG00000003259 9491 0.74 - - - - - - 0.740 - - - eukaryotic translation initiation factor 2B subunit alpha [Source:HGNC Symbol;Acc:HGNC:3257]
34. APIP ENSGALG00000031286 6838 0.74 - - - - - - 0.740 - - - APAF1 interacting protein [Source:NCBI gene;Acc:428860]
35. TMEM70 ENSGALG00000033568 10720 0.739 - - - - - - 0.739 - - - transmembrane protein 70 [Source:NCBI gene;Acc:420188]
36. UBE2D1 ENSGALG00000021213 5876 0.739 - - - - - - 0.739 - - - ubiquitin conjugating enzyme E2 D1 [Source:NCBI gene;Acc:423641]
37. AMBRA1 ENSGALG00000008358 2865 0.737 - - - - - - 0.737 - - - autophagy and beclin 1 regulator 1 [Source:HGNC Symbol;Acc:HGNC:25990]
38. THBS1 ENSGALG00000009626 3521 0.737 - - - - - - - 0.737 - - thrombospondin 1 [Source:NCBI gene;Acc:373987]
39. RDH10 ENSGALG00000034346 15285 0.736 - - - - - - 0.736 - - - retinol dehydrogenase 10 [Source:NCBI gene;Acc:420183]
40. HMGB3 ENSGALG00000009071 12011 0.736 - - - - - - 0.736 - - - high mobility group box 3 [Source:NCBI gene;Acc:396232]
41. CIB1 ENSGALG00000008302 13946 0.735 - - - - - - 0.735 - - - calcium and integrin binding 1 [Source:NCBI gene;Acc:770162]
42. PDRG1 ENSGALG00000035111 9863 0.734 - - - - - - 0.734 - - - p53 and DNA damage regulated 1 [Source:HGNC Symbol;Acc:HGNC:16119]
43. MRPL2 ENSGALG00000008597 16500 0.733 - - - - - - 0.733 - - - mitochondrial ribosomal protein L2 [Source:HGNC Symbol;Acc:HGNC:14056]
44. MED9 ENSGALG00000031214 10779 0.732 - - - - - - 0.732 - - - mediator complex subunit 9 [Source:NCBI gene;Acc:416506]
45. SKAP2 ENSGALG00000030081 13746 0.732 - - - - - - 0.732 - - - src kinase associated phosphoprotein 2 [Source:HGNC Symbol;Acc:HGNC:15687]
46. BRP44 BRP44 17093 0.732 - - - - - - 0.732 - - -
47. CCNG2 ENSGALG00000010347 9122 0.732 - - - - - - - 0.732 - - cyclin G2 [Source:HGNC Symbol;Acc:HGNC:1593]
48. CHRAC1 ENSGALG00000040823 5695 0.73 - - - - - - - 0.730 - - chromatin accessibility complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:13544]
49. SMC4 ENSGALG00000009553 15715 0.73 - - - - - - 0.730 - - - structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
50. EIF4A2 ENSGALG00000008684 58507 0.73 - - - - - - 0.730 - - - eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
51. FAM18B1 ENSGALG00000001335 5177 0.729 - - - - - - 0.729 - - - family with sequence similarity 18, member B1 [Source:NCBI gene;Acc:417324]
52. PCM1 ENSGALG00000013602 6347 0.729 - - - - - - 0.729 - - - pericentriolar material 1 [Source:NCBI gene;Acc:395204]
53. FOXJ2 ENSGALG00000014329 4975 0.729 - - - - - - 0.729 - - - forkhead box J2 [Source:HGNC Symbol;Acc:HGNC:24818]
54. CREM ENSGALG00000007082 1991 0.728 - - - - - - 0.728 - - - cAMP responsive element modulator [Source:NCBI gene;Acc:378903]
55. SAT1 ENSGALG00000016348 8469 0.727 - - - - - - - 0.727 - - spermidine/spermine N1-acetyltransferase 1 [Source:NCBI gene;Acc:374006]
56. CNOT11 ENSGALG00000039563 11251 0.726 - - - - - - 0.726 - - - CCR4-NOT transcription complex subunit 11
57. FAM177A1 ENSGALG00000010046 4318 0.725 - - - - - - 0.725 - - - family with sequence similarity 177 member A1 [Source:NCBI gene;Acc:423323]
58. SNX7 ENSGALG00000005478 4736 0.724 - - - - - - - 0.724 - - sorting nexin 7 [Source:HGNC Symbol;Acc:HGNC:14971]
59. RANBP1 ENSGALG00000002107 17715 0.724 - - - - - - 0.724 - - - RAN binding protein 1 [Source:NCBI gene;Acc:416787]
60. NOC4L ENSGALG00000002272 9644 0.723 - - - - - - 0.723 - - - nucleolar complex associated 4 homolog [Source:NCBI gene;Acc:416798]
61. HERC2 ENSGALG00000016739 9900 0.722 - - - - - - 0.722 - - - HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:418682]
62. USP15 ENSGALG00000030024 2761 0.722 - - - - - - 0.722 - - - ubiquitin specific peptidase 15 [Source:NCBI gene;Acc:395644]
63. FERMT2 ENSGALG00000012425 5480 0.722 - - - - - - 0.722 - - - fermitin family member 2 [Source:HGNC Symbol;Acc:HGNC:15767]
64. SIAH1 ENSGALG00000003916 6682 0.721 - - - - - - - 0.721 - - siah E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:10857]
65. MOCS2 ENSGALG00000014906 4974 0.721 - - - - - - 0.721 - - - molybdenum cofactor synthesis 2 [Source:HGNC Symbol;Acc:HGNC:7193]
66. LSM5 ENSGALG00000041625 22307 0.721 - - - - - - 0.721 - - - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420751]
67. PTGFRN ENSGALG00000015464 14584 0.72 - - - - - - 0.720 - - - prostaglandin F2 receptor inhibitor [Source:HGNC Symbol;Acc:HGNC:9601]
68. HSPA4 ENSGALG00000040882 20966 0.72 - - - - - - 0.720 - - - heat shock protein family A (Hsp70) member 4 [Source:HGNC Symbol;Acc:HGNC:5237]
69. ATG3 ENSGALG00000015204 11277 0.719 - - - - - - 0.719 - - - autophagy related 3 [Source:NCBI gene;Acc:418369]
70. KIAA1715 KIAA1715 4237 0.718 - - - - - - - 0.718 - -
71. KDELR2 ENSGALG00000040793 29669 0.718 - - - - - - 0.718 - - - KDEL endoplasmic reticulum protein retention receptor 2 [Source:NCBI gene;Acc:771927]
72. SLC15A4 ENSGALG00000002695 2729 0.718 - - - - - - - 0.718 - - solute carrier family 15 member 4 [Source:HGNC Symbol;Acc:HGNC:23090]
73. CRLS1 ENSGALG00000009214 8652 0.718 - - - - - - 0.718 - - - cardiolipin synthase 1 [Source:HGNC Symbol;Acc:HGNC:16148]
74. HEATR1 ENSGALG00000032799 2305 0.717 - - - - - - - 0.717 - - HEAT repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:25517]
75. RB1 ENSGALG00000016997 3712 0.717 - - - - - - - 0.717 - - retinoblastoma 1 [Source:NCBI gene;Acc:386582]
76. SPCS3 ENSGALG00000010839 19106 0.716 - - - - - - 0.716 - - - signal peptidase complex subunit 3 [Source:NCBI gene;Acc:396234]
77. CDC45 ENSGALG00000001616 8432 0.715 - - - - - - 0.715 - - - cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]
78. ATP6AP1 ENSGALG00000008836 4343 0.715 - - - - - - 0.715 - - - ATPase H+ transporting accessory protein 1 [Source:NCBI gene;Acc:427854]
79. GGA.10540 GGA.10540 3324 0.715 - - - - - - - 0.715 - -
80. TMEM41B ENSGALG00000005815 2049 0.715 - - - - - - - 0.715 - - transmembrane protein 41B [Source:NCBI gene;Acc:423047]
81. CHMP6 ENSGALG00000026428 18026 0.714 - - - - - - 0.714 - - - charged multivesicular body protein 6 [Source:NCBI gene;Acc:428673]
82. CCNC ENSGALG00000015471 6497 0.714 - - - - - - 0.714 - - - cyclin C [Source:NCBI gene;Acc:421791]
83. C10orf11 C10orf11 3087 0.714 - - - - - - 0.714 - - -
84. LOC768709 ENSGALG00000017558 5004 0.714 - - - - - - 0.714 - - - uncharacterized LOC768709
85. INTS2 ENSGALG00000005269 6966 0.714 - - - - - - 0.714 - - - integrator complex subunit 2 [Source:NCBI gene;Acc:417640]
86. MYO1B ENSGALG00000007712 8755 0.713 - - - - - - 0.713 - - - myosin IB [Source:HGNC Symbol;Acc:HGNC:7596]
87. NAA30 ENSGALG00000012098 4681 0.712 - - - - - - 0.712 - - - N(alpha)-acetyltransferase 30, NatC catalytic subunit [Source:HGNC Symbol;Acc:HGNC:19844]
88. PPP1R2 ENSGALG00000029789 11594 0.711 - - - - - - 0.711 - - - protein phosphatase 1 regulatory inhibitor subunit 2 [Source:NCBI gene;Acc:424894]
89. AP2A2 ENSGALG00000006799 13874 0.711 - - - - - - 0.711 - - - adaptor related protein complex 2 subunit alpha 2 [Source:NCBI gene;Acc:423102]
90. HMG20A ENSGALG00000041641 5818 0.711 - - - - - - 0.711 - - - high mobility group 20A [Source:NCBI gene;Acc:415346]
91. CHANK2 CHANK2 420 0.711 - - - - - - - - 0.711 -
92. MRPL24 ENSGALG00000030994 24264 0.71 - - - - - - 0.710 - - - mitochondrial ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC:14037]
93. gga-mir-6587 ENSGALG00000026386 9441 0.71 - - - - - - 0.710 - - - gga-mir-6587 [Source:miRBase;Acc:MI0022407]
94. MRPL46 ENSGALG00000006782 5033 0.71 - - - - - - 0.710 - - - mitochondrial ribosomal protein L46 [Source:NCBI gene;Acc:415499]
95. EXOC2 ENSGALG00000012837 4914 0.709 - - - - - - 0.709 - - - exocyst complex component 2 [Source:NCBI gene;Acc:420889]
96. NAV2 ENSGALG00000003999 6587 0.709 - - - - - - 0.709 - - - neuron navigator 2 [Source:HGNC Symbol;Acc:HGNC:15997]
97. TMOD1 ENSGALG00000002125 933 0.709 - - - - - - - 0.709 - - tropomodulin 1 [Source:NCBI gene;Acc:395883]
98. ILF2 ENSGALG00000011570 23050 0.709 - - - - - - 0.709 - - - interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:HGNC:6037]
99. NUPL1 NUPL1 8197 0.708 - - - - - - 0.708 - - -
100. RARS ENSGALG00000001850 23283 0.708 - - - - - - 0.708 - - - arginyl-tRNA synthetase [Source:NCBI gene;Acc:416168]

There are 21 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA