Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for PABPC1

Gene Name Gene ID Reads Annotation
PABPC1 ENSGALG00000030280 23934 poly(A) binding protein cytoplasmic 1 [Source:NCBI gene;Acc:430997]











Genes with expression patterns similar to PABPC1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. PABPC1 ENSGALG00000030280 23934 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 poly(A) binding protein cytoplasmic 1 [Source:NCBI gene;Acc:430997]
2. MYO1B ENSGALG00000007712 8755 1.549 - - - - - - - 0.817 - 0.732 myosin IB [Source:HGNC Symbol;Acc:HGNC:7596]
3. FBN2 ENSGALG00000014686 4538 1.542 - - - - - - 0.717 0.825 - - fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
4. TLK2 ENSGALG00000000410 4690 1.536 - - - - - - 0.709 0.827 - - tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
5. ANKRD11 ENSGALG00000006222 12327 1.535 0.799 0.736 - - - - - - - - ankyrin repeat domain 11, transcript variant X2
6. TCERG1 ENSGALG00000007528 6346 1.534 0.789 - - - - - 0.745 - - - transcription elongation regulator 1 [Source:HGNC Symbol;Acc:HGNC:15630]
7. ATRX ENSGALG00000007843 34172 1.53 0.804 - 0.726 - - - - - - - ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
8. EEF2 ENSGALG00000033884 62036 1.518 0.802 - - - - - - - 0.716 - eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
9. TOP2A ENSGALG00000003922 7726 1.516 0.813 0.703 - - - - - - - - topoisomerase (DNA) II alpha [Source:NCBI gene;Acc:395570]
10. PTGFRN ENSGALG00000015464 14584 1.51 - - - - - - 0.772 - - 0.738 prostaglandin F2 receptor inhibitor [Source:HGNC Symbol;Acc:HGNC:9601]
11. TMEM30A ENSGALG00000015904 8533 1.494 - - - - - - 0.768 0.726 - - transmembrane protein 30A [Source:NCBI gene;Acc:421861]
12. ARHGAP5 ENSGALG00000009992 3485 1.491 - - - - - - 0.746 - - 0.745 Rho GTPase activating protein 5 [Source:HGNC Symbol;Acc:HGNC:675]
13. HNRNPH1 HNRNPH1 8819 1.488 0.750 - - - - - 0.738 - - -
14. SMARCC1 ENSGALG00000032642 4842 1.488 0.788 0.700 - - - - - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 [Source:HGNC Symbol;Acc:HGNC:11104]
15. PNN ENSGALG00000010167 6417 1.471 0.760 - 0.711 - - - - - - - pinin, desmosome associated protein [Source:HGNC Symbol;Acc:HGNC:9162]
16. QSER1 ENSGALG00000012030 4490 1.464 0.718 - - - - - - - - 0.746 glutamine and serine rich 1 [Source:NCBI gene;Acc:421599]
17. DDX46 ENSGALG00000006404 8765 1.434 0.734 0.700 - - - - - - - - DEAD-box helicase 46 [Source:HGNC Symbol;Acc:HGNC:18681]
18. MAN2A1 ENSGALG00000000255 4543 1.431 - - - - - - 0.720 - - 0.711 mannosidase alpha class 2A member 1 [Source:HGNC Symbol;Acc:HGNC:6824]
19. ZNF644 ENSGALG00000034253 28348 1.431 - - - - - - - 0.724 - 0.707 zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
20. GBAS 18453 0.978 - - - - - - - 0.978 - - glioblastoma amplified sequence
21. TOP2B ENSGALG00000011300 25048 0.909 - - - - - - - 0.909 - - DNA topoisomerase 2-beta [Source:NCBI gene;Acc:395966]
22. PIGA ENSGALG00000016559 5010 0.888 - - - - - - - 0.888 - - phosphatidylinositol glycan anchor biosynthesis class A [Source:NCBI gene;Acc:418624]
23. CAPZB ENSGALG00000004034 19630 0.852 - - - - - - - 0.852 - - capping actin protein of muscle Z-line beta subunit [Source:NCBI gene;Acc:396418]
24. METAP2 ENSGALG00000011377 16311 0.851 - - - - - - 0.851 - - - methionyl aminopeptidase 2 [Source:NCBI gene;Acc:417912]
25. ACER3 ENSGALG00000000755 5761 0.844 - - - - - - 0.844 - - - alkaline ceramidase 3 [Source:HGNC Symbol;Acc:HGNC:16066]
26. SOX11 ENSGALG00000016397 12144 0.844 - - - - - - 0.844 - - - SRY-box 11 [Source:NCBI gene;Acc:396104]
27. TARDBP ENSGALG00000002906 24748 0.841 - - - - - - 0.841 - - - TAR DNA binding protein [Source:NCBI gene;Acc:419453]
28. ATP2B1 ENSGALG00000030550 15123 0.839 - - - - - - 0.839 - - - ATPase plasma membrane Ca2+ transporting 1 [Source:NCBI gene;Acc:374244]
29. SKP2 ENSGALG00000003547 14637 0.835 - - - - - - 0.835 - - - S-phase kinase associated protein 2 [Source:NCBI gene;Acc:427437]
30. TET1 ENSGALG00000031604 13002 0.828 - - - - - - 0.828 - - - tet methylcytosine dioxygenase 1 [Source:HGNC Symbol;Acc:HGNC:29484]
31. SPTAN1 ENSGALG00000004719 20251 0.827 - - - - - - - 0.827 - - spectrin alpha, non-erythrocytic 1 [Source:NCBI gene;Acc:374234]
32. VIMENTIN VIMENTIN 33105 0.827 - - - - - - - 0.827 - -
33. PUM1 ENSGALG00000042598 9392 0.827 - - - - - - - 0.827 - - pumilio RNA binding family member 1 [Source:NCBI gene;Acc:419554]
34. ITGA1 ENSGALG00000014891 11378 0.826 - - - - - - - 0.826 - - integrin subunit alpha 1 [Source:NCBI gene;Acc:395951]
35. TCTN3 ENSGALG00000010517 3985 0.826 - - - - - - - 0.826 - - tectonic family member 3 [Source:NCBI gene;Acc:100857412]
36. LZTFL1 ENSGALG00000033928 3493 0.825 - - - - - - - 0.825 - - leucine zipper transcription factor like 1 [Source:HGNC Symbol;Acc:HGNC:6741]
37. CDCA9 ENSGALG00000021225 2244 0.825 - - - - - - - 0.825 - - cell division cycle associated 9 [Source:NCBI gene;Acc:415745]
38. TMED7 ENSGALG00000028484 21008 0.825 - - - - - - 0.825 - - - Gallus gallus transmembrane p24 trafficking protein 7 (TMED7), mRNA. [Source:RefSeq mRNA;Acc:NM_001319030]
39. ARL4A ENSGALG00000027757 4285 0.825 - - - - - - - 0.825 - - ADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]
40. SLC25A15 ENSGALG00000017032 6773 0.824 - - - - - - - 0.824 - - solute carrier family 25 member 15 [Source:NCBI gene;Acc:418886]
41. RBM17 ENSGALG00000006332 12656 0.824 - - - - - - 0.824 - - - RNA binding motif protein 17 [Source:HGNC Symbol;Acc:HGNC:16944]
42. VATB VATB 13756 0.824 - - - - - - - 0.824 - -
43. PDCD2 ENSGALG00000011169 3594 0.824 - - - - - - - 0.824 - - programmed cell death 2 [Source:NCBI gene;Acc:421550]
44. PRKRIP1 ENSGALG00000001833 5092 0.824 - - - - - - - 0.824 - - PRKR interacting protein 1 [Source:NCBI gene;Acc:417508]
45. URB1 ENSGALG00000015887 5854 0.824 - - - - - - - 0.824 - - URB1 ribosome biogenesis 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:17344]
46. ACAD8 ENSGALG00000001557 2562 0.823 - - - - - - - 0.823 - - acyl-CoA dehydrogenase family member 8 [Source:NCBI gene;Acc:419739]
47. KIAA1598 KIAA1598 989 0.823 - - - - - - - 0.823 - -
48. PPP1R21 ENSGALG00000008937 2343 0.823 - - - - - - - 0.823 - - protein phosphatase 1 regulatory subunit 21 [Source:NCBI gene;Acc:421287]
49. USP10 ENSGALG00000005674 7768 0.823 - - - - - - 0.823 - - - ubiquitin specific peptidase 10 [Source:NCBI gene;Acc:415817]
50. EXOC4 ENSGALG00000008477 4684 0.823 - - - - - - - 0.823 - - exocyst complex component 4 [Source:NCBI gene;Acc:416700]
51. KIAA1324L ENSGALG00000030324 1695 0.823 - - - - - - - 0.823 - - KIAA1324 like [Source:HGNC Symbol;Acc:HGNC:21945]
52. PKIB ENSGALG00000027036 1663 0.822 - - - - - - - 0.822 - - protein kinase (cAMP-dependent, catalytic) inhibitor beta [Source:NCBI gene;Acc:769402]
53. COX20 ENSGALG00000027440 5881 0.822 - - - - - - - 0.822 - - COX20, cytochrome c oxidase assembly factor [Source:NCBI gene;Acc:421493]
54. SLC2A10 ENSGALG00000004498 421 0.822 - - - - - - - 0.822 - - solute carrier family 2 member 10 [Source:HGNC Symbol;Acc:HGNC:13444]
55. KCNE3 ENSGALG00000022696 561 0.822 - - - - - - - 0.822 - - potassium voltage-gated channel subfamily E regulatory subunit 3 [Source:HGNC Symbol;Acc:HGNC:6243]
56. SLC35E1 ENSGALG00000003794 2563 0.822 - - - - - - - 0.822 - - solute carrier family 35 member E1 [Source:HGNC Symbol;Acc:HGNC:20803]
57. PPP2R3C ENSGALG00000010052 637 0.822 - - - - - - - 0.822 - - protein phosphatase 2 regulatory subunit B''gamma [Source:HGNC Symbol;Acc:HGNC:17485]
58. PLA2R1 ENSGALG00000011149 1964 0.822 - - - - - - - 0.822 - - phospholipase A2 receptor 1 [Source:NCBI gene;Acc:404304]
59. KCTD10 ENSGALG00000005138 1191 0.822 - - - - - - - 0.822 - - potassium channel tetramerization domain containing 10 [Source:HGNC Symbol;Acc:HGNC:23236]
60. AMOTL2 5217 0.818 - - - - - - - 0.818 - - angiomotin like 2, transcript variant X3
61. KDELR3 ENSGALG00000032313 4376 0.815 - - - - - - - 0.815 - - KDEL endoplasmic reticulum protein retention receptor 3 [Source:NCBI gene;Acc:418026]
62. ACBD3 ENSGALG00000009246 8405 0.814 - - - - - - 0.814 - - - acyl-CoA binding domain containing 3 [Source:NCBI gene;Acc:421317]
63. NAP1L1 ENSGALG00000010238 14506 0.808 0.808 - - - - - - - - - nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
64. CYTL1 ENSGALG00000015015 4438 0.807 - - - - - - - 0.807 - - cytokine like 1 [Source:HGNC Symbol;Acc:HGNC:24435]
65. HOXA5 ENSGALG00000025929 6231 0.806 - - - - - - 0.806 - - - homeobox A5 [Source:NCBI gene;Acc:100858404]
66. ENSGALG00000017396 ENSGALG00000017396 9028 0.805 - - - - - - 0.805 - - -
67. RUNX1T1 ENSGALG00000033091 17529 0.805 - - - - - - 0.805 - - - RUNX1 translocation partner 1 [Source:NCBI gene;Acc:395503]
68. DGKD ENSGALG00000001730 4456 0.804 - - - - - - - 0.804 - - diacylglycerol kinase delta [Source:HGNC Symbol;Acc:HGNC:2851]
69. KBTBD2 ENSGALG00000038704 2821 0.804 - - - - - - - 0.804 - - kelch repeat and BTB domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21751]
70. USP16 ENSGALG00000015813 6803 0.804 0.804 - - - - - - - - - ubiquitin specific peptidase 16 [Source:HGNC Symbol;Acc:HGNC:12614]
71. CDC45 ENSGALG00000001616 8432 0.8 - - - - - - - 0.800 - - cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]
72. CPSF6 ENSGALG00000019355 7634 0.8 - - - - - - - 0.800 - - cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:417844]
73. C4BPA ENSGALG00000001175 4278 0.8 - - - - - - 0.800 - - - complement component 4 binding protein, alpha [Source:NCBI gene;Acc:395384]
74. UBR2 ENSGALG00000009906 7717 0.799 - - - - - - 0.799 - - - ubiquitin protein ligase E3 component n-recognin 2 [Source:HGNC Symbol;Acc:HGNC:21289]
75. ENSGALG00000004132 ENSGALG00000004132 9287 0.798 - - - - - - - 0.798 - -
76. PARP1 ENSGALG00000009228 39433 0.798 - - - - - - 0.798 - - - poly (ADP-ribose) polymerase 1 [Source:NCBI gene;Acc:396199]
77. AATF ENSGALG00000005420 6501 0.798 - - - - - - - 0.798 - - apoptosis antagonizing transcription factor [Source:NCBI gene;Acc:417653]
78. STRN ENSGALG00000010580 7561 0.796 - - - - - - - 0.796 - - striatin [Source:HGNC Symbol;Acc:HGNC:11424]
79. HCFC2 ENSGALG00000029616 4525 0.796 - - - - - - 0.796 - - - host cell factor C2 [Source:HGNC Symbol;Acc:HGNC:24972]
80. TAF3 ENSGALG00000006731 15569 0.795 - - - - - - 0.795 - - - TATA-box binding protein associated factor 3 [Source:NCBI gene;Acc:419107]
81. ATG3 ENSGALG00000015204 11277 0.795 - - - - - - 0.795 - - - autophagy related 3 [Source:NCBI gene;Acc:418369]
82. UBE2H ENSGALG00000031975 12964 0.795 - - - - - - 0.795 - - - ubiquitin conjugating enzyme E2 H [Source:NCBI gene;Acc:416678]
83. MAP2K4 ENSGALG00000032178 5982 0.795 - - - - - - 0.795 - - - mitogen-activated protein kinase kinase 4 [Source:HGNC Symbol;Acc:HGNC:6844]
84. RAE1 ENSGALG00000007653 8930 0.794 - - - - - - - 0.794 - - ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
85. MTDH ENSGALG00000034050 9525 0.794 0.794 - - - - - - - - - metadherin [Source:HGNC Symbol;Acc:HGNC:29608]
86. HISTH1 ENSGALG00000011747 16825 0.793 0.793 - - - - - - - - - histone H1
87. PTPMT1 ENSGALG00000008091 6160 0.793 - - - - - - 0.793 - - - protein tyrosine phosphatase, mitochondrial 1 [Source:NCBI gene;Acc:423181]
88. EP300 ENSGALG00000011992 12490 0.792 - - - - - - 0.792 - - - E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
89. SURF6 ENSGALG00000038413 11178 0.791 0.791 - - - - - - - - - surfeit 6 [Source:NCBI gene;Acc:417160]
90. VGLL4 ENSGALG00000004937 3762 0.791 - - - - - - 0.791 - - - vestigial like family member 4 [Source:NCBI gene;Acc:415962]
91. GPATCH2 ENSGALG00000009627 4061 0.791 - - - - - - - 0.791 - - G-patch domain containing 2 [Source:NCBI gene;Acc:421355]
92. UTP6 ENSGALG00000003260 4909 0.791 - - - - - - 0.791 - - - UTP6, small subunit processome component [Source:NCBI gene;Acc:417405]
93. TBL1XR1 ENSGALG00000039182 16983 0.79 - - - - - - 0.790 - - - transducin beta like 1 X-linked receptor 1 [Source:NCBI gene;Acc:426284]
94. MRPS18A ENSGALG00000010296 11039 0.79 - - - - - - - 0.790 - - mitochondrial ribosomal protein S18A [Source:NCBI gene;Acc:421445]
95. gga-mir-7476 gga-mir-7476 20209 0.789 - - - - - - 0.789 - - -
96. DDX19B ENSGALG00000039967 49600 0.788 - - - - - - 0.788 - - - ATP-dependent RNA helicase DDX19B [Source:NCBI gene;Acc:426504]
97. SYNCRIP ENSGALG00000015830 30555 0.788 - - - - - - - - - 0.788 synaptotagmin binding cytoplasmic RNA interacting protein [Source:NCBI gene;Acc:421831]
98. PHF20 ENSGALG00000001522 5618 0.788 - - - - - - 0.788 - - - PHD finger protein 20 [Source:HGNC Symbol;Acc:HGNC:16098]
99. NDUFA12 ENSGALG00000011325 19807 0.788 - - - - - - 0.788 - - - NADH:ubiquinone oxidoreductase subunit A12 [Source:NCBI gene;Acc:417907]
100. HMGB1 ENSGALG00000042875 83509 0.787 0.787 - - - - - - - - - high mobility group box 1 [Source:NCBI gene;Acc:395724]

There are 333 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA