Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for OPTC

Gene Name Gene ID Reads Annotation
OPTC ENSGALG00000003554 3698 opticin [Source:NCBI gene;Acc:395130]











Genes with expression patterns similar to OPTC

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. OPTC ENSGALG00000003554 3698 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 opticin [Source:NCBI gene;Acc:395130]
2. ENSGALG00000027373 ENSGALG00000027373 2129 3.381 - - 0.880 0.889 - 0.875 - - - 0.737
3. ZIC1 ENSGALG00000040532 6543 3.274 - - 0.865 0.822 0.704 0.883 - - - - Zic family member 1 [Source:NCBI gene;Acc:374103]
4. WNT4 ENSGALG00000041708 1277 3.255 - - 0.747 - - 0.797 0.975 - 0.736 - Wnt family member 4 [Source:NCBI gene;Acc:395561]
5. PTPRZ1 ENSGALG00000040114 3410 2.72 - - 0.906 0.890 - 0.924 - - - - protein tyrosine phosphatase, receptor type Z1 [Source:NCBI gene;Acc:396403]
6. HES5 ENSGALG00000001141 6514 2.676 - - 0.914 0.811 - 0.951 - - - - hes family bHLH transcription factor 5 [Source:NCBI gene;Acc:419392]
7. PAX-6 PAX-6 2650 2.627 - - 0.879 0.878 - 0.870 - - - -
8. NSG1 ENSGALG00000015010 5829 2.584 - - - - 0.997 0.847 0.740 - - - neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
9. CRABP-I ENSGALG00000003193 67258 2.561 - - 0.827 0.773 - 0.961 - - - - cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
10. MARCKSL1 ENSGALG00000032335 88728 2.52 - - - 0.710 0.907 0.903 - - - - MARCKS like 1 [Source:NCBI gene;Acc:770764]
11. PAX-7 PAX-7 3856 2.501 - - - - 0.952 0.828 0.721 - - -
12. LFNG ENSGALG00000038515 5178 2.476 - - 0.816 - - 0.866 0.794 - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395790]
13. ENSGALG00000027002 ENSGALG00000027002 7570 2.442 - - 0.838 0.743 - 0.861 - - - -
14. ENSGALG00000022967 ENSGALG00000022967 240 2.43 - - 0.858 0.791 - 0.781 - - - -
15. WSCD2 ENSGALG00000004849 477 2.383 - - 0.837 0.729 - 0.817 - - - - WSC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:29117]
16. DRAXIN ENSGALG00000004631 3122 2.365 - - 0.789 0.778 - 0.798 - - - - dorsal inhibitory axon guidance protein [Source:NCBI gene;Acc:419492]
17. CSPG5 ENSGALG00000032184 991 2.309 - - 0.731 0.780 - 0.798 - - - - chondroitin sulfate proteoglycan 5 [Source:NCBI gene;Acc:395466]
18. BCL9 ENSGALG00000037655 4620 1.84 - - - - 0.990 - 0.850 - - - B cell CLL/lymphoma 9 [Source:HGNC Symbol;Acc:HGNC:1008]
19. CERCAM ENSGALG00000004986 5158 1.75 - - 0.808 - - 0.942 - - - - cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
20. GNG10 ENSGALG00000015683 6905 1.74 - - 0.856 - - 0.884 - - - - G protein subunit gamma 10 [Source:NCBI gene;Acc:769603]
21. HES6 ENSGALG00000028415 4830 1.734 - - - 0.832 - 0.902 - - - - hes family bHLH transcription factor 6
22. LASP-2 LASP-2 4415 1.716 - - 0.835 - - 0.881 - - - -
23. DLL1 ENSGALG00000011182 1613 1.674 - - - 0.793 - 0.881 - - - - delta like canonical Notch ligand 1 [Source:NCBI gene;Acc:395820]
24. NPAS3 ENSGALG00000029022 1950 1.655 - - 0.834 - - 0.821 - - - - neuronal PAS domain protein 3 [Source:HGNC Symbol;Acc:HGNC:19311]
25. PROCA1 668 1.625 - - 0.789 - - 0.836 - - - - protein interacting with cyclin A1
26. SRGAP3 ENSGALG00000008378 4331 1.609 - - 0.732 - - 0.877 - - - - SLIT-ROBO Rho GTPase activating protein 3 [Source:NCBI gene;Acc:416115]
27. NEFM ENSGALG00000000317 6992 1.606 - - - - - 0.901 0.705 - - - neurofilament medium [Source:NCBI gene;Acc:396206]
28. TUBB2C TUBB2C 44249 1.601 - - - - 0.778 0.823 - - - -
29. HOXD4 ENSGALG00000023419 6073 1.573 - - - 0.798 - 0.775 - - - - homeobox D4 [Source:NCBI gene;Acc:424139]
30. DENND5B 4077 1.565 - - 0.752 - - 0.813 - - - - DENN domain containing 5B, transcript variant X1
31. TAGLN3 ENSGALG00000015379 7865 1.553 - - 0.774 - - 0.779 - - - - transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]
32. DCLK2 ENSGALG00000032386 2253 1.54 - - - - - 0.805 0.735 - - - doublecortin like kinase 2 [Source:HGNC Symbol;Acc:HGNC:19002]
33. FZD3 ENSGALG00000042308 3356 1.536 - - 0.716 - - 0.820 - - - - frizzled class receptor 3 [Source:NCBI gene;Acc:395572]
34. NIN ENSGALG00000012361 2284 1.528 - - - - - 0.760 0.768 - - - ninein [Source:HGNC Symbol;Acc:HGNC:14906]
35. RASSF2 ENSGALG00000030432 4822 1.518 - - 0.742 - - 0.776 - - - - Ras association domain family member 2 [Source:NCBI gene;Acc:419521]
36. SDK2 ENSGALG00000031895 2682 1.493 - - - - - 0.710 0.783 - - - sidekick cell adhesion molecule 2 [Source:NCBI gene;Acc:395215]
37. SMOC1 ENSGALG00000009415 2403 1.467 - - - - - 0.728 0.739 - - - SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
38. TUBB2B ENSGALG00000012821 41535 1.438 - - 0.710 - - 0.728 - - - - tubulin beta 2B class IIb [Source:NCBI gene;Acc:420883]
39. NDST2 ENSGALG00000005107 4224 0.995 - - - - 0.995 - - - - - N-deacetylase and N-sulfotransferase 2, transcript variant X2
40. MRPL22 ENSGALG00000003919 2760 0.995 - - - - 0.995 - - - - - mitochondrial ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:14480]
41. MRPL46 ENSGALG00000006782 5033 0.993 - - - - 0.993 - - - - - mitochondrial ribosomal protein L46 [Source:NCBI gene;Acc:415499]
42. MAP1B ENSGALG00000014999 6288 0.993 - - - - 0.993 - - - - - microtubule associated protein 1B
43. WHSC1L1 4065 0.992 - - - - 0.992 - - - - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X8
44. RAE1 ENSGALG00000007653 8930 0.992 - - - - 0.992 - - - - - ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
45. USP1 ENSGALG00000010957 8297 0.992 - - - - 0.992 - - - - - ubiquitin specific peptidase 1 [Source:NCBI gene;Acc:424685]
46. gga-mir-6584 ENSGALG00000028834 1481 0.992 - - - - 0.992 - - - - - gga-mir-6584 [Source:miRBase;Acc:MI0022404]
47. MYEOV2 MYEOV2 5155 0.992 - - - - 0.992 - - - - -
48. HTRA3 ENSGALG00000034673 512 0.992 - - - - 0.992 - - - - - HtrA serine peptidase 3 [Source:HGNC Symbol;Acc:HGNC:30406]
49. RNF113A ENSGALG00000000538 3985 0.991 - - - - 0.991 - - - - - ring finger protein 113A [Source:NCBI gene;Acc:419956]
50. HOXB3 ENSGALG00000043219 5198 0.991 - - - - 0.991 - - - - - homeobox B3 [Source:NCBI gene;Acc:395502]
51. TBC1D7 ENSGALG00000012731 4891 0.991 - - - - 0.991 - - - - - TBC1 domain family member 7 [Source:HGNC Symbol;Acc:HGNC:21066]
52. SEC61A2 ENSGALG00000036300 4235 0.991 - - - - 0.991 - - - - - Gallus gallus Sec61 translocon alpha 2 subunit (SEC61A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001321620]
53. MED1 ENSGALG00000001708 9556 0.991 - - - - 0.991 - - - - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
54. EPB41L1 ENSGALG00000034171 3616 0.99 - - - - 0.990 - - - - - erythrocyte membrane protein band 4.1 like 1 [Source:HGNC Symbol;Acc:HGNC:3378]
55. PPAPDC1B PPAPDC1B 6698 0.99 - - - - 0.990 - - - - -
56. TM2D2 ENSGALG00000003356 7088 0.99 - - - - 0.990 - - - - - TM2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24127]
57. NOL6 ENSGALG00000030730 7191 0.99 - - - - 0.990 - - - - - nucleolar protein 6
58. CCDC59 ENSGALG00000028648 9272 0.99 - - - - 0.990 - - - - - coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]
59. ABCC1 ENSGALG00000006646 2596 0.99 - - - - 0.990 - - - - - ATP binding cassette subfamily C member 1 [Source:NCBI gene;Acc:395416]
60. C15H12ORF49 C15H12ORF49 13250 0.989 - - - - 0.989 - - - - -
61. IBA57 ENSGALG00000005328 4362 0.989 - - - - 0.989 - - - - - IBA57 homolog, iron-sulfur cluster assembly [Source:NCBI gene;Acc:420396]
62. AGPAT3 ENSGALG00000031932 6903 0.989 - - - - 0.989 - - - - - 1-acylglycerol-3-phosphate O-acyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:326]
63. HYOU1 ENSGALG00000007659 3555 0.988 - - - - 0.988 - - - - - hypoxia up-regulated 1 [Source:NCBI gene;Acc:428251]
64. TMEM39B ENSGALG00000003287 4125 0.988 - - - - 0.988 - - - - - transmembrane protein 39B [Source:NCBI gene;Acc:419650]
65. TMEM18 ENSGALG00000028744 11779 0.988 - - - - 0.988 - - - - - transmembrane protein 18 [Source:NCBI gene;Acc:421911]
66. TNPO3 ENSGALG00000039420 5178 0.988 - - - - 0.988 - - - - - transportin 3 [Source:HGNC Symbol;Acc:HGNC:17103]
67. PHKA1 ENSGALG00000004801 2510 0.988 - - - - 0.988 - - - - - phosphorylase kinase regulatory subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:8925]
68. THBS1 ENSGALG00000009626 3521 0.987 - - - - 0.987 - - - - - thrombospondin 1 [Source:NCBI gene;Acc:373987]
69. HMGB3 ENSGALG00000009071 12011 0.987 - - - - 0.987 - - - - - high mobility group box 3 [Source:NCBI gene;Acc:396232]
70. VPS8 ENSGALG00000006704 5419 0.987 - - - - 0.987 - - - - - VPS8, CORVET complex subunit [Source:HGNC Symbol;Acc:HGNC:29122]
71. MRPS11 ENSGALG00000006777 16009 0.987 - - - - 0.987 - - - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
72. C4orf27 C4orf27 16724 0.986 - - - - 0.986 - - - - -
73. CENPE ENSGALG00000013208 12337 0.986 - - - - 0.986 - - - - - centromere protein E, transcript variant X4
74. KCTD9 ENSGALG00000000275 3455 0.985 - - - - 0.985 - - - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
75. UQCRC2 ENSGALG00000002490 23477 0.984 - - - - 0.984 - - - - - ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]
76. TRIM33 ENSGALG00000001976 7404 0.984 - - - - 0.984 - - - - - tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]
77. PGAM5 ENSGALG00000002137 7700 0.984 - - - - 0.984 - - - - - PGAM family member 5, mitochondrial serine/threonine protein phosphatase [Source:HGNC Symbol;Acc:HGNC:28763]
78. SAMM50 ENSGALG00000014194 20437 0.984 - - - - 0.984 - - - - - SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:418234]
79. DNAJC2 ENSGALG00000008249 28064 0.984 - - - - 0.984 - - - - - DnaJ heat shock protein family (Hsp40) member C2 [Source:NCBI gene;Acc:417717]
80. TBRG4 ENSGALG00000038102 9269 0.984 - - - - 0.984 - - - - - transforming growth factor beta regulator 4 [Source:HGNC Symbol;Acc:HGNC:17443]
81. RILPL2 ENSGALG00000003321 5632 0.983 - - - - 0.983 - - - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
82. OAF ENSGALG00000006715 12518 0.982 - - - - 0.982 - - - - - out at first homolog [Source:NCBI gene;Acc:395161]
83. SPG21 ENSGALG00000007262 8050 0.982 - - - - 0.982 - - - - - SPG21, maspardin [Source:NCBI gene;Acc:415526]
84. LUC7L2 ENSGALG00000036238 11817 0.982 - - - - 0.982 - - - - - LUC7 like 2, pre-mRNA splicing factor [Source:NCBI gene;Acc:417971]
85. FAM98A ENSGALG00000010428 9585 0.982 - - - - 0.982 - - - - - family with sequence similarity 98 member A [Source:NCBI gene;Acc:421458]
86. RAB21 ENSGALG00000010183 7718 0.98 - - - - 0.980 - - - - - RAB21, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18263]
87. MCM4 ENSGALG00000012915 13151 0.979 - - - - 0.979 - - - - - minichromosome maintenance complex component 4
88. ETF1 ENSGALG00000002262 14560 0.979 - - - - 0.979 - - - - - eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]
89. M6PR ENSGALG00000031681 9442 0.979 - - - - 0.979 - - - - - mannose-6-phosphate receptor, cation dependent, transcript variant X3
90. CREPT CREPT 17142 0.978 - - - - 0.978 - - - - -
91. SEC63 ENSGALG00000015308 11596 0.976 - - - - 0.976 - - - - - SEC63 homolog, protein translocation regulator [Source:HGNC Symbol;Acc:HGNC:21082]
92. MORN4 ENSGALG00000006149 7772 0.976 - - - - 0.976 - - - - - MORN repeat containing 4 [Source:NCBI gene;Acc:425290]
93. RBM26 ENSGALG00000016910 13769 0.974 - - - - 0.974 - - - - - RNA binding motif protein 26 [Source:HGNC Symbol;Acc:HGNC:20327]
94. NUP37 ENSGALG00000012759 9985 0.974 - - - - 0.974 - - - - - nucleoporin 37 [Source:NCBI gene;Acc:418093]
95. INCENP ENSGALG00000007537 16617 0.974 - - - - 0.974 - - - - - inner centromere protein [Source:NCBI gene;Acc:396270]
96. ESRP2 ENSGALG00000003374 4436 0.973 - - - - 0.973 - - - - - epithelial splicing regulatory protein 2 [Source:NCBI gene;Acc:415710]
97. RALB ENSGALG00000026493 14590 0.972 - - - - 0.972 - - - - - RAS like proto-oncogene B [Source:HGNC Symbol;Acc:HGNC:9840]
98. UBE2G2 ENSGALG00000005667 12689 0.972 - - - - 0.972 - - - - - ubiquitin conjugating enzyme E2 G2 [Source:NCBI gene;Acc:424837]
99. PSMD14 ENSGALG00000011128 13335 0.971 - - - - 0.971 - - - - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
100. TCF7L2 ENSGALG00000008883 13688 0.971 - - - - 0.971 - - - - - transcription factor 7-like 2 (T-cell specific, HMG-box) [Source:NCBI gene;Acc:395508]

There are 296 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA