Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for NUP88

Gene Name Gene ID Reads Annotation
NUP88 ENSGALG00000032280 9847 nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]











Genes with expression patterns similar to NUP88

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. NUP88 ENSGALG00000032280 9847 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]
2. SRP19 ENSGALG00000000218 14207 1.814 - - - - 0.960 - - 0.854 - - signal recognition particle 19 [Source:HGNC Symbol;Acc:HGNC:11300]
3. SLMO2 SLMO2 9207 1.775 - - - - 0.954 - 0.821 - - -
4. PBRM1 ENSGALG00000037455 6450 1.77 - - - - 0.959 - 0.811 - - - polybromo 1 [Source:NCBI gene;Acc:396074]
5. UQCRH ENSGALG00000017380 55734 1.766 - - - - 0.886 - 0.880 - - - ubiquinol-cytochrome c reductase hinge protein [Source:NCBI gene;Acc:771939]
6. PSMD3 ENSGALG00000033162 25615 1.736 - - - - 0.956 - 0.780 - - - proteasome 26S subunit, non-ATPase 3 [Source:NCBI gene;Acc:426133]
7. SRGAP1 ENSGALG00000009825 6753 1.714 - - - - 0.954 - 0.760 - - - SLIT-ROBO Rho GTPase activating protein 1 [Source:NCBI gene;Acc:417821]
8. MARC1 ENSGALG00000009453 5675 1.679 - - - - 0.974 - 0.705 - - - mitochondrial amidoxime reducing component 1 [Source:NCBI gene;Acc:428563]
9. GSPT1 15580 1.677 - - - - 0.930 - 0.747 - - - G1 to S phase transition 1, transcript variant X1
10. MED21 ENSGALG00000027435 5766 1.672 - - - - 0.958 - 0.714 - - - mediator complex subunit 21 [Source:HGNC Symbol;Acc:HGNC:11473]
11. MAD2L1 ENSGALG00000011967 16125 1.671 - - - - 0.838 - - 0.833 - - mitotic arrest deficient 2 like 1 [Source:NCBI gene;Acc:422675]
12. RSRC2 ENSGALG00000004493 9008 1.623 - - - - - - 0.765 0.858 - - arginine and serine rich coiled-coil 2 [Source:NCBI gene;Acc:416864]
13. DDX27 ENSGALG00000006974 18388 1.591 - - - - 0.866 - 0.725 - - - DEAD-box helicase 27 [Source:NCBI gene;Acc:419308]
14. TTPAL ENSGALG00000004244 2734 1.574 - - - - - - 0.750 0.824 - - alpha tocopherol transfer protein like [Source:NCBI gene;Acc:419197]
15. LSM5 ENSGALG00000041625 22307 1.538 - - - - 0.832 - 0.706 - - - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420751]
16. C1orf50 ENSGALG00000004800 4894 1.513 - - - - - - 0.732 0.781 - - chromosome 1 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:28795]
17. KDELR2 ENSGALG00000040793 29669 1.499 - - - - - - 0.766 0.733 - - KDEL endoplasmic reticulum protein retention receptor 2 [Source:NCBI gene;Acc:771927]
18. CSNK2A1 ENSGALG00000006197 41409 1.489 - - - - 0.778 - 0.711 - - - casein kinase 2 alpha 1 [Source:NCBI gene;Acc:432370]
19. YWHAZ ENSGALG00000031387 84985 1.475 - - - - 0.708 - 0.767 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
20. TPD52L2 ENSGALG00000004683 13624 1.471 - - - - - - 0.715 0.756 - - tumor protein D52 like 2 [Source:NCBI gene;Acc:419257]
21. PARPBP ENSGALG00000012756 1895 1.46 - - - - - - 0.716 0.744 - - PARP1 binding protein [Source:NCBI gene;Acc:418092]
22. DENR ENSGALG00000003795 30805 0.972 - - - - 0.972 - - - - - density regulated re-initiation and release factor [Source:NCBI gene;Acc:771794]
23. LZIC ENSGALG00000002616 9052 0.971 - - - - 0.971 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
24. RBM34 ENSGALG00000029915 5618 0.971 - - - - 0.971 - - - - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
25. STARD3NL ENSGALG00000033038 4851 0.971 - - - - 0.971 - - - - - STARD3 N-terminal like [Source:HGNC Symbol;Acc:HGNC:19169]
26. ACAT2 ENSGALG00000011659 12825 0.971 - - - - 0.971 - - - - - acetyl-CoA acetyltransferase 2 [Source:NCBI gene;Acc:421587]
27. WDR92 ENSGALG00000008760 3934 0.971 - - - - 0.971 - - - - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
28. PHTF1 ENSGALG00000001845 3276 0.971 - - - - 0.971 - - - - - putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:8939]
29. LOC426385 ENSGALG00000026301 2703 0.97 - - - - 0.970 - - - - - serine/threonine kinase 35-like, transcript variant X2
30. COQ5 ENSGALG00000007185 5614 0.97 - - - - 0.970 - - - - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
31. DLD ENSGALG00000007931 11011 0.97 - - - - 0.970 - - - - - dihydrolipoamide dehydrogenase [Source:NCBI gene;Acc:417699]
32. MED8 ENSGALG00000009993 3095 0.969 - - - - 0.969 - - - - - mediator complex subunit 8 [Source:NCBI gene;Acc:424565]
33. ETS1 ENSGALG00000001143 7284 0.969 - - - - 0.969 - - - - - v-ets avian erythroblastosis virus E26 oncogene homolog 1 [Source:NCBI gene;Acc:396235]
34. BRF1 ENSGALG00000011705 3406 0.968 - - - - 0.968 - - - - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
35. YARS ENSGALG00000003563 11093 0.968 - - - - 0.968 - - - - - tyrosyl-tRNA synthetase [Source:NCBI gene;Acc:419666]
36. ENSGALG00000027854 ENSGALG00000027854 5007 0.968 - - - - 0.968 - - - - -
37. IARS2 ENSGALG00000009566 4599 0.967 - - - - 0.967 - - - - - isoleucyl-tRNA synthetase 2, mitochondrial [Source:NCBI gene;Acc:421346]
38. C9orf85 ENSGALG00000026001 4110 0.967 - - - - 0.967 - - - - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
39. SAP30 ENSGALG00000036252 2032 0.967 - - - - 0.967 - - - - - Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]
40. KIF11 ENSGALG00000030597 5528 0.967 - - - - 0.967 - - - - - kinesin family member 11 [Source:NCBI gene;Acc:423809]
41. PSMG3 ENSGALG00000004203 11240 0.967 - - - - 0.967 - - - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
42. RBM6 ENSGALG00000035578 1690 0.967 - - - - 0.967 - - - - - RNA binding motif protein 6 [Source:NCBI gene;Acc:415931]
43. BAHD1 ENSGALG00000033675 1779 0.967 - - - - 0.967 - - - - - bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29153]
44. MRPL16 ENSGALG00000029419 8033 0.967 - - - - 0.967 - - - - - mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:HGNC:14476]
45. RAMP3 ENSGALG00000037246 1187 0.966 - - - - 0.966 - - - - - receptor activity modifying protein 3 [Source:NCBI gene;Acc:420786]
46. SYNE1 ENSGALG00000013505 2324 0.966 - - - - 0.966 - - - - - spectrin repeat containing, nuclear envelope 1, transcript variant X3
47. PREP2 PREP2 238 0.966 - - - - 0.966 - - - - -
48. ANKRD9 ENSGALG00000011376 525 0.966 - - - - 0.966 - - - - - ankyrin repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20096]
49. GTF2H1 ENSGALG00000042340 1553 0.966 - - - - 0.966 - - - - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
50. ASAP2 ENSGALG00000016419 1393 0.966 - - - - 0.966 - - - - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
51. PRDM4 ENSGALG00000012619 876 0.965 - - - - 0.965 - - - - - PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
52. DLL1 ENSGALG00000011182 1613 0.965 - - - - 0.965 - - - - - delta like canonical Notch ligand 1 [Source:NCBI gene;Acc:395820]
53. SMG7 ENSGALG00000004667 707 0.965 - - - - 0.965 - - - - - SMG7, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]
54. CCDC132 CCDC132 2632 0.965 - - - - 0.965 - - - - -
55. SDCBP ENSGALG00000015436 1228 0.965 - - - - 0.965 - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
56. PITHD1 ENSGALG00000003986 11470 0.965 - - - - 0.965 - - - - - PITH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25022]
57. PRCC ENSGALG00000040696 9346 0.964 - - - - 0.964 - - - - - proline rich mitotic checkpoint control factor [Source:HGNC Symbol;Acc:HGNC:9343]
58. PTK2B ENSGALG00000016564 406 0.964 - - - - 0.964 - - - - - protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
59. HSF2 ENSGALG00000038420 5259 0.963 - - - - 0.963 - - - - - heat shock transcription factor 2 [Source:NCBI gene;Acc:421724]
60. HARS ENSGALG00000035080 11602 0.963 - - - - 0.963 - - - - - histidyl-tRNA synthetase [Source:NCBI gene;Acc:416132]
61. ZC3H6 ENSGALG00000008269 10353 0.963 - - - - 0.963 - - - - - zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:421230]
62. TSPO2 ENSGALG00000003212 5141 0.963 - - - - 0.963 - - - - - translocator protein 2 [Source:HGNC Symbol;Acc:HGNC:21256]
63. SNX14 ENSGALG00000015831 2554 0.963 - - - - 0.963 - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
64. CDKN1B ENSGALG00000022980 4606 0.963 - - - - 0.963 - - - - - cyclin dependent kinase inhibitor 1B [Source:NCBI gene;Acc:374106]
65. ENSGALG00000006569 ENSGALG00000006569 2169 0.963 - - - - 0.963 - - - - -
66. NDUFV1 ENSGALG00000042809 6222 0.963 - - - - 0.963 - - - - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:NCBI gene;Acc:430210]
67. RAD54B ENSGALG00000043597 1699 0.962 - - - - 0.962 - - - - - RAD54 homolog B [Source:NCBI gene;Acc:395449]
68. TMF1 ENSGALG00000013408 3344 0.961 - - - - 0.961 - - - - - TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:11870]
69. UPF3B ENSGALG00000008618 12350 0.961 - - - - 0.961 - - - - - UPF3B, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]
70. CDCA7 ENSGALG00000040833 7484 0.96 - - - - 0.960 - - - - - cell division cycle associated 7 [Source:HGNC Symbol;Acc:HGNC:14628]
71. FNDC5 ENSGALG00000003567 3328 0.96 - - - - 0.960 - - - - - Gallus gallus fibronectin type III domain containing 5 (FNDC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001318986]
72. FUNDC2 ENSGALG00000029585 9334 0.959 - - - - 0.959 - - - - - FUN14 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24925]
73. DGKZ ENSGALG00000008380 5389 0.959 - - - - 0.959 - - - - - diacylglycerol kinase zeta [Source:NCBI gene;Acc:423197]
74. WNK2 ENSGALG00000038850 4712 0.958 - - - - 0.958 - - - - - WNK lysine deficient protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14542]
75. LMAN2 ENSGALG00000033232 11740 0.958 - - - - 0.958 - - - - - lectin, mannose binding 2 [Source:HGNC Symbol;Acc:HGNC:16986]
76. TIMMDC1 ENSGALG00000024480 9337 0.958 - - - - 0.958 - - - - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
77. RALGDS ENSGALG00000003412 4478 0.958 - - - - 0.958 - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
78. SPEN ENSGALG00000036932 9688 0.957 - - - - 0.957 - - - - - spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
79. UTP6 ENSGALG00000003260 4909 0.956 - - - - 0.956 - - - - - UTP6, small subunit processome component [Source:NCBI gene;Acc:417405]
80. DNAJC9 ENSGALG00000002701 19249 0.955 - - - - 0.955 - - - - - DnaJ heat shock protein family (Hsp40) member C9 [Source:NCBI gene;Acc:423640]
81. MEF2BNB MEF2BNB 5578 0.955 - - - - 0.955 - - - - -
82. EDNRA ENSGALG00000010013 2472 0.954 - - - - 0.954 - - - - - endothelin receptor type A [Source:NCBI gene;Acc:373908]
83. NEK6 ENSGALG00000001118 20333 0.954 - - - - 0.954 - - - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
84. RHOT1 ENSGALG00000003397 5149 0.954 - - - - 0.954 - - - - - ras homolog family member T1 [Source:NCBI gene;Acc:417410]
85. PRKCI ENSGALG00000009364 11574 0.953 - - - - 0.953 - - - - - protein kinase C iota [Source:NCBI gene;Acc:424991]
86. GATC ENSGALG00000007195 8610 0.953 - - - - 0.953 - - - - - glutamyl-tRNA amidotransferase subunit C, transcript variant X2
87. SH3BGR ENSGALG00000016127 2561 0.952 - - - - 0.952 - - - - - SH3 domain binding glutamate rich protein
88. MYO9A ENSGALG00000033618 4505 0.951 - - - - 0.951 - - - - - myosin IXA, transcript variant X10
89. MYBL2 ENSGALG00000003503 15875 0.95 - - - - 0.950 - - - - - MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
90. TAF3 ENSGALG00000006731 15569 0.95 - - - - 0.950 - - - - - TATA-box binding protein associated factor 3 [Source:NCBI gene;Acc:419107]
91. SFXN5 ENSGALG00000016094 2678 0.95 - - - - 0.950 - - - - - sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
92. CDH3 5050 0.95 - - - - 0.950 - - - - - cadherin 3
93. LGMN ENSGALG00000010811 7401 0.95 - - - - 0.950 - - - - - legumain [Source:HGNC Symbol;Acc:HGNC:9472]
94. SLC30A4 ENSGALG00000005703 5696 0.949 - - - - 0.949 - - - - - solute carrier family 30 member 4 [Source:NCBI gene;Acc:415444]
95. RPL22 ENSGALG00000000719 74238 0.948 - - - - 0.948 - - - - - ribosomal protein L22 [Source:NCBI gene;Acc:373937]
96. Mar-05 Mar-05 6330 0.947 - - - - 0.947 - - - - -
97. TM9SF3 ENSGALG00000005534 15290 0.947 - - - - 0.947 - - - - - transmembrane 9 superfamily member 3
98. NARS ENSGALG00000040506 9506 0.945 - - - - 0.945 - - - - - asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
99. LGALS1 ENSGALG00000012420 13993 0.945 - - - - 0.945 - - - - - galectin 1 [Source:NCBI gene;Acc:396491]
100. UBE2D3 ENSGALG00000012311 39831 0.944 - - - - 0.944 - - - - - ubiquitin conjugating enzyme E2 D3 [Source:NCBI gene;Acc:422713]

There are 473 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA