Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for NPHP4

Gene Name Gene ID Reads Annotation
NPHP4 ENSGALG00000000966 1698 nephrocystin 4, transcript variant X5











Genes with expression patterns similar to NPHP4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. NPHP4 ENSGALG00000000966 1698 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 nephrocystin 4, transcript variant X5
2. PIK3R3 ENSGALG00000010335 374 1.687 - - - - - - 0.858 - - 0.829 phosphoinositide-3-kinase regulatory subunit 3, transcript variant X1
3. SCAF4 ENSGALG00000033965 2027 1.623 - - - - - - 0.859 - - 0.764 SR-related CTD associated factor 4 [Source:NCBI gene;Acc:418492]
4. MXRA5 ENSGALG00000016635 352 1.614 - - - - - 0.765 0.849 - - - matrix remodeling associated 5 [Source:HGNC Symbol;Acc:HGNC:7539]
5. WARS ENSGALG00000011228 193 1.594 - - - - - 0.796 - - - 0.798 tryptophanyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:12729]
6. RIT1 ENSGALG00000014647 7174 1.594 - - - - - - 0.824 - - 0.770 Ras like without CAAX 1 [Source:NCBI gene;Acc:425068]
7. ENSGALG00000004127 ENSGALG00000004127 566 1.576 - - - - - 0.763 - - - 0.813
8. SNF8 ENSGALG00000001309 7398 1.54 - - - - - 0.701 - - - 0.839 SNF8, ESCRT-II complex subunit [Source:HGNC Symbol;Acc:HGNC:17028]
9. NAA16 ENSGALG00000032808 3366 1.537 - - - - - - 0.741 - - 0.796 N(alpha)-acetyltransferase 16, NatA auxiliary subunit [Source:HGNC Symbol;Acc:HGNC:26164]
10. TPCN3 ENSGALG00000008198 124 1.521 - - - - - 0.774 - - - 0.747 two-pore calcium channel 3 [Source:NCBI gene;Acc:421224]
11. NKIRAS1 ENSGALG00000011289 311 1.52 - - - - - 0.729 - - - 0.791 NFKB inhibitor interacting Ras like 1 [Source:HGNC Symbol;Acc:HGNC:17899]
12. ECHDC1 ENSGALG00000014828 958 1.517 - - - - - 0.745 - - - 0.772 ethylmalonyl-CoA decarboxylase 1 [Source:NCBI gene;Acc:769021]
13. SYS1 ENSGALG00000003929 4487 1.463 - - - - - - 0.737 - - 0.726 SYS1, golgi trafficking protein [Source:NCBI gene;Acc:419183]
14. CREB1 ENSGALG00000008494 2219 1.459 - - - - - 0.738 - - - 0.721 cAMP responsive element binding protein 1 [Source:NCBI gene;Acc:395099]
15. DIEXF ENSGALG00000009887 4782 0.905 - - - - - - 0.905 - - - digestive organ expansion factor homolog (zebrafish) [Source:NCBI gene;Acc:421384]
16. IK ENSGALG00000037172 12100 0.904 - - - - - - 0.904 - - - IK cytokine, down-regulator of HLA II [Source:NCBI gene;Acc:416133]
17. PAPD7 ENSGALG00000013061 2031 0.898 - - - - - - 0.898 - - - poly(A) RNA polymerase D7, non-canonical [Source:NCBI gene;Acc:770425]
18. MED16 ENSGALG00000001978 2387 0.897 - - - - - - 0.897 - - - mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
19. ENSGALG00000028164 ENSGALG00000028164 3325 0.896 - - - - - - 0.896 - - -
20. PALD1 ENSGALG00000004465 3553 0.895 - - - - - - 0.895 - - - phosphatase domain containing, paladin 1 [Source:NCBI gene;Acc:373898]
21. PGAP2 ENSGALG00000027762 2583 0.893 - - - - - - 0.893 - - - post-GPI attachment to proteins 2 [Source:HGNC Symbol;Acc:HGNC:17893]
22. TNFAIP8 ENSGALG00000027761 2383 0.892 - - - - - - 0.892 - - - TNF alpha induced protein 8 [Source:NCBI gene;Acc:427384]
23. USP54 ENSGALG00000005232 2749 0.892 - - - - - - 0.892 - - - ubiquitin specific peptidase 54 [Source:HGNC Symbol;Acc:HGNC:23513]
24. WIPI1 ENSGALG00000004215 3359 0.89 - - - - - - 0.890 - - - WD repeat domain, phosphoinositide interacting 1 [Source:HGNC Symbol;Acc:HGNC:25471]
25. SRPK1 ENSGALG00000037546 1849 0.89 - - - - - - 0.890 - - - SRSF protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:11305]
26. C14orf80 C14orf80 1921 0.889 - - - - - - 0.889 - - -
27. IFT74 ENSGALG00000001801 1932 0.888 - - - - - - 0.888 - - - intraflagellar transport 74 [Source:HGNC Symbol;Acc:HGNC:21424]
28. EIF3I ENSGALG00000003337 28832 0.886 - - - - - - 0.886 - - - eukaryotic translation initiation factor 3 subunit I [Source:NCBI gene;Acc:419653]
29. SGSM3 ENSGALG00000012033 1839 0.886 - - - - - - 0.886 - - - small G protein signaling modulator 3 [Source:HGNC Symbol;Acc:HGNC:25228]
30. NUP205 ENSGALG00000011662 4157 0.885 - - - - - - 0.885 - - - nucleoporin 205
31. RBM34 ENSGALG00000029915 5618 0.884 - - - - - - 0.884 - - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
32. TM2D3 ENSGALG00000026271 2566 0.884 - - - - - - 0.884 - - - TM2 domain containing 3 [Source:NCBI gene;Acc:415390]
33. PEX6 ENSGALG00000045514 4582 0.883 - - - - - - 0.883 - - - peroxisomal biogenesis factor 6 [Source:HGNC Symbol;Acc:HGNC:8859]
34. NAT9 ENSGALG00000007723 2098 0.88 - - - - - - 0.880 - - - N-acetyltransferase 9 (putative), transcript variant X7
35. MGLL ENSGALG00000032736 612 0.88 - - - - - - 0.880 - - - monoglyceride lipase [Source:NCBI gene;Acc:416024]
36. MST1 ENSGALG00000002722 994 0.88 - - - - - - 0.880 - - - macrophage stimulating 1 (hepatocyte growth factor-like) [Source:NCBI gene;Acc:396135]
37. DNPEP ENSGALG00000011318 10623 0.879 - - - - - - 0.879 - - - aspartyl aminopeptidase [Source:NCBI gene;Acc:424200]
38. BMI1 ENSGALG00000041267 6618 0.879 - - - - - - 0.879 - - - BMI1 proto-oncogene, polycomb ring finger [Source:NCBI gene;Acc:493647]
39. ASB6 ENSGALG00000004378 1080 0.879 - - - - - - 0.879 - - - ankyrin repeat and SOCS box containing 6 [Source:NCBI gene;Acc:417194]
40. CDC42SE2 ENSGALG00000027258 4725 0.877 - - - - - - 0.877 - - - CDC42 small effector 2 [Source:NCBI gene;Acc:768825]
41. SUGP1 ENSGALG00000042132 2771 0.875 - - - - - - 0.875 - - - SURP and G-patch domain containing 1 [Source:NCBI gene;Acc:428349]
42. RBL1 ENSGALG00000001332 2568 0.874 - - - - - - 0.874 - - - RB transcriptional corepressor like 1 [Source:HGNC Symbol;Acc:HGNC:9893]
43. SPAG9 ENSGALG00000034001 2314 0.874 - - - - - - 0.874 - - - sperm associated antigen 9 [Source:HGNC Symbol;Acc:HGNC:14524]
44. GAS6 ENSGALG00000016820 481 0.873 - - - - - - 0.873 - - - growth arrest specific 6 [Source:HGNC Symbol;Acc:HGNC:4168]
45. LIMCH1 ENSGALG00000014258 1987 0.873 - - - - - - 0.873 - - - LIM and calponin homology domains 1 [Source:HGNC Symbol;Acc:HGNC:29191]
46. RASA4 ENSGALG00000001876 178 0.873 - - - - - - - - - 0.873 RAS p21 protein activator 4 [Source:NCBI gene;Acc:417513]
47. SLC25A21 ENSGALG00000010117 536 0.872 - - - - - - 0.872 - - - solute carrier family 25 member 21 [Source:HGNC Symbol;Acc:HGNC:14411]
48. COPS8 ENSGALG00000033385 10166 0.872 - - - - - - 0.872 - - - COP9 signalosome subunit 8 [Source:NCBI gene;Acc:424020]
49. UBE3B ENSGALG00000013851 1672 0.872 - - - - - - 0.872 - - - ubiquitin protein ligase E3B [Source:NCBI gene;Acc:776286]
50. HESX1 ENSGALG00000005506 203 0.871 - - - - - - 0.871 - - - HESX homeobox 1 [Source:NCBI gene;Acc:395864]
51. NSRP1 ENSGALG00000004186 1683 0.871 - - - - - - 0.871 - - - nuclear speckle splicing regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:25305]
52. NCAPG2 ENSGALG00000006525 2319 0.871 - - - - - - 0.871 - - - non-SMC condensin II complex subunit G2 [Source:HGNC Symbol;Acc:HGNC:21904]
53. PKN3 532 0.871 - - - - - - 0.871 - - - protein kinase N3, transcript variant X2
54. UPK3BL ENSGALG00000001885 1650 0.871 - - - - - - 0.871 - - - uroplakin 3B-like
55. MBNL1 ENSGALG00000029190 3953 0.87 - - - - - - 0.870 - - - muscleblind like splicing regulator 1 [Source:NCBI gene;Acc:425033]
56. MBNL2 ENSGALG00000016890 3162 0.87 - - - - - - 0.870 - - - muscleblind like splicing regulator 2 [Source:NCBI gene;Acc:418784]
57. PARL ENSGALG00000002315 15943 0.87 - - - - - - 0.870 - - - presenilin associated rhomboid like
58. CEP290 ENSGALG00000011177 1559 0.869 - - - - - - 0.869 - - - centrosomal protein 290 [Source:HGNC Symbol;Acc:HGNC:29021]
59. XPO7 ENSGALG00000001838 1875 0.869 - - - - - - 0.869 - - - exportin 7 [Source:NCBI gene;Acc:426925]
60. MORC3 ENSGALG00000036556 2976 0.868 - - - - - - 0.868 - - - MORC family CW-type zinc finger 3 [Source:NCBI gene;Acc:418513]
61. ERMP1 ENSGALG00000000438 1136 0.868 - - - - - - 0.868 - - - endoplasmic reticulum metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:23703]
62. ZFYVE19 ENSGALG00000008460 2750 0.867 - - - - - - 0.867 - - - zinc finger FYVE-type containing 19 [Source:NCBI gene;Acc:423204]
63. FAM193A ENSGALG00000015667 3075 0.867 - - - - - - 0.867 - - - family with sequence similarity 193 member A [Source:HGNC Symbol;Acc:HGNC:16822]
64. NT5C2 ENSGALG00000008179 1760 0.867 - - - - - - 0.867 - - - 5'-nucleotidase, cytosolic II [Source:NCBI gene;Acc:423871]
65. SDK2 ENSGALG00000031895 2682 0.867 - - - - - - 0.867 - - - sidekick cell adhesion molecule 2 [Source:NCBI gene;Acc:395215]
66. TM9SF4 ENSGALG00000006568 567 0.866 - - - - - - 0.866 - - - transmembrane 9 superfamily member 4 [Source:HGNC Symbol;Acc:HGNC:30797]
67. RAB1A ENSGALG00000031582 6929 0.866 - - - - - - 0.866 - - - RAB1A, member RAS oncogene family [Source:NCBI gene;Acc:421273]
68. WDSUB1 ENSGALG00000012574 2038 0.866 - - - - - - 0.866 - - - WD repeat, sterile alpha motif and U-box domain containing 1 [Source:NCBI gene;Acc:424331]
69. GPC3 ENSGALG00000006087 3744 0.865 - - - - - - 0.865 - - - glypican 3 [Source:HGNC Symbol;Acc:HGNC:4451]
70. ALDH18A1 ENSGALG00000034655 3038 0.865 - - - - - - 0.865 - - - aldehyde dehydrogenase 18 family member A1, transcript variant X13
71. DNAJC16 ENSGALG00000032832 750 0.864 - - - - - - 0.864 - - - DnaJ heat shock protein family (Hsp40) member C16 [Source:NCBI gene;Acc:429208]
72. SUN1 ENSGALG00000003781 3442 0.863 - - - - - - 0.863 - - - Sad1 and UNC84 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18587]
73. SCLT1 2397 0.862 - - - - - - 0.862 - - - sodium channel and clathrin linker 1, transcript variant X6
74. CMSS1 ENSGALG00000015267 2954 0.862 - - - - - - 0.862 - - - cms1 ribosomal small subunit homolog (yeast) [Source:NCBI gene;Acc:418381]
75. NDRG3 ENSGALG00000001492 5919 0.862 - - - - - - 0.862 - - - NDRG family member 3 [Source:HGNC Symbol;Acc:HGNC:14462]
76. INTS7 ENSGALG00000009843 2395 0.862 - - - - - - 0.862 - - - integrator complex subunit 7 [Source:NCBI gene;Acc:421374]
77. OCRL ENSGALG00000003920 1812 0.861 - - - - - - 0.861 - - - OCRL, inositol polyphosphate-5-phosphatase [Source:HGNC Symbol;Acc:HGNC:8108]
78. SPG11 ENSGALG00000008180 1890 0.861 - - - - - - 0.861 - - - SPG11, spatacsin vesicle trafficking associated [Source:HGNC Symbol;Acc:HGNC:11226]
79. RNF20 ENSGALG00000015548 7199 0.86 - - - - - - 0.860 - - - ring finger protein 20 [Source:NCBI gene;Acc:427310]
80. ENSGALG00000013233 ENSGALG00000013233 3265 0.86 - - - - - - 0.860 - - -
81. ETAA1 ENSGALG00000027922 1684 0.86 - - - - - - 0.860 - - - ETAA1, ATR kinase activator [Source:HGNC Symbol;Acc:HGNC:24648]
82. SNORA31 SNORA31 183 0.859 - - - - - - 0.859 - - -
83. DNAJC12 ENSGALG00000002769 1418 0.859 - - - - - - 0.859 - - - DnaJ heat shock protein family (Hsp40) member C12 [Source:NCBI gene;Acc:423647]
84. GAS2 ENSGALG00000003655 2672 0.859 - - - - - - 0.859 - - - growth arrest specific 2 [Source:NCBI gene;Acc:422970]
85. ENTPD8L ENSGALG00000008936 731 0.858 - - - - - - 0.858 - - - ectonucleoside triphosphate diphosphohydrolase 8-like
86. PTN ENSGALG00000040493 864 0.857 - - - - - - 0.857 - - - pleiotrophin [Source:NCBI gene;Acc:418125]
87. ETNPPL ENSGALG00000034741 39 0.856 - - - - - - - - - 0.856 ethanolamine-phosphate phospho-lyase [Source:HGNC Symbol;Acc:HGNC:14404]
88. TGDS ENSGALG00000016898 3206 0.856 - - - - - - 0.856 - - - TDP-glucose 4,6-dehydratase [Source:HGNC Symbol;Acc:HGNC:20324]
89. PLCE1 ENSGALG00000039528 151 0.855 - - - - - - 0.855 - - - phospholipase C epsilon 1
90. ENSGALG00000003619 ENSGALG00000003619 58 0.854 - - - - - - 0.854 - - -
91. XYLT1 ENSGALG00000006757 169 0.854 - - - - - - - - - 0.854 xylosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:15516]
92. UBE2V2 ENSGALG00000028133 7044 0.854 - - - - - - 0.854 - - - ubiquitin conjugating enzyme E2 V2 [Source:NCBI gene;Acc:421109]
93. FAM57A ENSGALG00000004820 1492 0.853 - - - - - - 0.853 - - - family with sequence similarity 57 member A [Source:HGNC Symbol;Acc:HGNC:29646]
94. NIN ENSGALG00000012361 2284 0.852 - - - - - - 0.852 - - - ninein [Source:HGNC Symbol;Acc:HGNC:14906]
95. RAD54L2 ENSGALG00000003243 187 0.852 - - - - - - - - - 0.852 RAD54-like 2 (S. cerevisiae) [Source:NCBI gene;Acc:415933]
96. LFNG ENSGALG00000038515 5178 0.852 - - - - - - 0.852 - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395790]
97. SCUBE1 ENSGALG00000014178 91 0.852 - - - - - - 0.852 - - - signal peptide, CUB domain and EGF like domain containing 1, transcript variant X4
98. TCTE1 ENSGALG00000010165 65 0.851 - - - - - - 0.851 - - - t-complex-associated-testis-expressed 1 [Source:HGNC Symbol;Acc:HGNC:11693]
99. URM1 ENSGALG00000004971 17880 0.851 - - - - - - 0.851 - - - ubiquitin related modifier 1 [Source:NCBI gene;Acc:417221]
100. FAM183A 242 0.85 - - - - - - 0.850 - - - family with sequence similarity 183 member A, transcript variant 2

There are 499 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA