Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for NHLH1

Gene Name Gene ID Reads Annotation
NHLH1 ENSGALG00000025817 1617 nescient helix-loop-helix 1 [Source:NCBI gene;Acc:373910]











Genes with expression patterns similar to NHLH1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. NHLH1 ENSGALG00000025817 1617 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 1.000 nescient helix-loop-helix 1 [Source:NCBI gene;Acc:373910]
2. TAGLN3 ENSGALG00000015379 7865 4.892 - 0.751 0.916 0.730 - 0.753 - - 0.879 0.863 transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]
3. ENSGALG00000027002 ENSGALG00000027002 7570 3.944 - 0.787 0.837 - 0.712 - - - 0.872 0.736
4. NFASC ENSGALG00000031776 4264 3.93 - 0.773 0.755 0.817 - 0.816 - - - 0.769 neurofascin [Source:NCBI gene;Acc:419824]
5. HES5 ENSGALG00000001141 6514 3.862 - 0.736 0.803 0.741 - - - - 0.794 0.788 hes family bHLH transcription factor 5 [Source:NCBI gene;Acc:419392]
6. CSPG5 ENSGALG00000032184 991 3.736 - - 0.758 0.736 0.705 0.701 0.836 - - - chondroitin sulfate proteoglycan 5 [Source:NCBI gene;Acc:395466]
7. WSCD2 ENSGALG00000004849 477 3.326 - - 0.862 - - 0.870 - - 0.716 0.878 WSC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:29117]
8. CRMP1B CRMP1B 18633 3.312 - - 0.848 0.713 - - - - 0.870 0.881
9. MARCKSL1 ENSGALG00000032335 88728 3.262 - - 0.796 - - 0.835 - - 0.800 0.831 MARCKS like 1 [Source:NCBI gene;Acc:770764]
10. TUBB2B ENSGALG00000012821 41535 3.153 - - 0.708 - - 0.705 - - 0.870 0.870 tubulin beta 2B class IIb [Source:NCBI gene;Acc:420883]
11. NEFM ENSGALG00000000317 6992 3.116 - - 0.749 0.794 0.744 - - - - 0.829 neurofilament medium [Source:NCBI gene;Acc:396206]
12. PRDM8 ENSGALG00000038372 928 3.113 - - 0.760 - - 0.794 - - 0.839 0.720 PR/SET domain 8 [Source:HGNC Symbol;Acc:HGNC:13993]
13. MYT1 ENSGALG00000005932 2017 3.033 - 0.741 0.799 - - - - - 0.729 0.764 myelin transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:7622]
14. RGMA ENSGALG00000039173 12874 2.525 - - - - - 0.864 - - 0.833 0.828 repulsive guidance molecule family member a [Source:NCBI gene;Acc:395214]
15. NTN3 ENSGALG00000029072 1368 2.491 - - 0.871 - - 0.835 - - - 0.785 netrin 1 [Source:NCBI gene;Acc:396387]
16. GPM6A ENSGALG00000043480 2133 2.457 - - 0.826 - - - - - 0.778 0.853 glycoprotein M6A [Source:NCBI gene;Acc:422569]
17. RTN1 ENSGALG00000012006 2438 2.416 - - 0.892 - - - - - 0.722 0.802 reticulon 1 [Source:NCBI gene;Acc:378791]
18. NEFL ENSGALG00000000314 4883 2.345 - - 0.850 - - 0.739 - - - 0.756 neurofilament light [Source:HGNC Symbol;Acc:HGNC:7739]
19. CERCAM ENSGALG00000004986 5158 2.31 - - 0.769 - - - - - 0.764 0.777 cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
20. SYT4 ENSGALG00000042626 384 2.301 - - 0.781 - - - - - 0.727 0.793 synaptotagmin 4 [Source:HGNC Symbol;Acc:HGNC:11512]
21. CRABP-I ENSGALG00000003193 67258 2.283 - - 0.786 0.746 - - - - 0.751 - cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
22. PKM ENSGALG00000001992 93960 2.279 - - 0.726 - - 0.766 - - 0.787 - pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
23. DPYSL4 ENSGALG00000010490 3431 2.274 - - - - - 0.741 - - 0.803 0.730 dihydropyrimidinase like 4 [Source:HGNC Symbol;Acc:HGNC:3016]
24. PROCA1 668 2.272 - - 0.798 - - 0.738 - - - 0.736 protein interacting with cyclin A1
25. ISL1 ENSGALG00000014884 7666 2.268 - - 0.744 - - - - - 0.756 0.768 ISL LIM homeobox 1 [Source:NCBI gene;Acc:396383]
26. ELAVL4 ENSGALG00000010533 4978 2.255 - - - - 0.748 0.739 - - - 0.768 ELAV like RNA binding protein 4 [Source:NCBI gene;Acc:395634]
27. HMP19 ENSGALG00000028602 1604 2.233 - - 0.766 - - 0.702 - - - 0.765 Gallus gallus HMP19 protein (HMP19), mRNA. [Source:RefSeq mRNA;Acc:NM_001326465]
28. STMN2 ENSGALG00000039690 989 2.217 - - 0.757 0.712 - - - - - 0.748 stathmin 2 [Source:NCBI gene;Acc:396095]
29. ENSGALG00000027373 ENSGALG00000027373 2129 2.174 - - 0.726 - - - - - 0.742 0.706
30. TMSB10 TMSB10 518 1.782 - - 0.915 - - - - - - 0.867
31. FAM110A ENSGALG00000046425 5558 1.737 - - - - - - - - 0.841 0.896 family with sequence similarity 110 member A [Source:HGNC Symbol;Acc:HGNC:16188]
32. NSG1 ENSGALG00000015010 5829 1.665 - - - - - - - - 0.845 0.820 neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
33. MAP2 ENSGALG00000002789 6597 1.629 - - - - - - - - 0.749 0.880 microtubule associated protein 2, transcript variant X33
34. PLPPR1 ENSGALG00000015542 3179 1.591 - - 0.798 - - - - - - 0.793 phospholipid phosphatase related 1 [Source:HGNC Symbol;Acc:HGNC:25993]
35. MNR2 ENSGALG00000011349 3340 1.582 - 0.874 0.708 - - - - - - - homeodomain protein
36. GADD45_1 GADD45_1 1433 1.576 - - - - - 0.714 - - - 0.862
37. KIF21B ENSGALG00000034347 4144 1.573 - - - - - - - - 0.778 0.795 kinesin family member 21B [Source:HGNC Symbol;Acc:HGNC:29442]
38. SLMO1 SLMO1 4357 1.558 - - - - - - - - 0.712 0.846
39. ZBTB18 ENSGALG00000010705 3433 1.555 - - - - - 0.806 - - - 0.749 zinc finger and BTB domain containing 18 [Source:HGNC Symbol;Acc:HGNC:13030]
40. FZD3 ENSGALG00000042308 3356 1.548 - - - - - - - - 0.787 0.761 frizzled class receptor 3 [Source:NCBI gene;Acc:395572]
41. GNG2 ENSGALG00000027629 9404 1.548 - - - - - - - - 0.773 0.775 G protein subunit gamma 2 [Source:NCBI gene;Acc:423581]
42. UCH-L1 UCH-L1 12697 1.544 - - - - - - - - 0.749 0.795
43. ZIC1 ENSGALG00000040532 6543 1.523 - - 0.742 - - - - - 0.781 - Zic family member 1 [Source:NCBI gene;Acc:374103]
44. EYA2 ENSGALG00000004508 939 1.515 - - - - - 0.706 - - 0.809 - Gallus gallus EYA transcriptional coactivator and phosphatase 2 (EYA2), mRNA. [Source:RefSeq mRNA;Acc:NM_204915]
45. ASTN1 ENSGALG00000004472 855 1.506 - - - - - - - - 0.712 0.794 astrotactin 1 [Source:HGNC Symbol;Acc:HGNC:773]
46. SYNPR ENSGALG00000007284 1368 1.493 - - - - - - - - 0.724 0.769 synaptoporin [Source:NCBI gene;Acc:396359]
47. IRX1 ENSGALG00000030991 1474 1.485 - - - - - - - - 0.762 0.723 iroquois homeobox 1 [Source:NCBI gene;Acc:374185]
48. ACAT2 ENSGALG00000011659 12825 1.478 - - - - - - - - 0.750 0.728 acetyl-CoA acetyltransferase 2 [Source:NCBI gene;Acc:421587]
49. C1QTNF3 ENSGALG00000027887 8646 1.477 - - - - - 0.726 - - - 0.751 C1q and tumor necrosis factor related protein 3, transcript variant X1
50. PROKR2 ENSGALG00000008741 72 1.474 - - 0.704 - - - - - - 0.770 prokineticin receptor 2 [Source:NCBI gene;Acc:421263]
51. MURC 3759 1.47 - - - - - 0.711 - - - 0.759 muscle related coiled-coil protein
52. PROX1 ENSGALG00000009791 1184 1.463 - - 0.714 - 0.749 - - - - - prospero homeobox 1 [Source:NCBI gene;Acc:395802]
53. GDI2 ENSGALG00000008169 67151 1.459 - - - - - - - - 0.738 0.721 GDP dissociation inhibitor 2 [Source:NCBI gene;Acc:395854]
54. TBC1D30 ENSGALG00000009859 994 1.452 - - - - - - - - 0.730 0.722 TBC1 domain family member 30 [Source:HGNC Symbol;Acc:HGNC:29164]
55. ALDOC ENSGALG00000026077 106910 1.446 - - 0.711 - - 0.735 - - - - aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
56. PAX-6 PAX-6 2650 1.441 - - 0.729 - - - - - 0.712 -
57. RUSC2 ENSGALG00000002371 272 1.421 - - - - - - - - 0.712 0.709 RUN and SH3 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23625]
58. EF1A EF1A 2378 1.411 - - 0.705 - - - - - - 0.706
59. CHGA ENSGALG00000010820 1028 0.875 - - - 0.875 - - - - - - chromogranin A [Source:HGNC Symbol;Acc:HGNC:1929]
60. DENND5B 4077 0.865 - - - - - - - - - 0.865 DENN domain containing 5B, transcript variant X1
61. RBM38 ENSGALG00000026081 7115 0.852 - - - - - 0.852 - - - - RNA binding motif protein 38 [Source:NCBI gene;Acc:768866]
62. EN1 ENSGALG00000042389 3051 0.846 - - - - - - - - - 0.846 engrailed homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3342]
63. HMGCS1 ENSGALG00000014862 2846 0.825 - - - - - - - - 0.825 - 3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:NCBI gene;Acc:396379]
64. TTYH2 ENSGALG00000026940 15628 0.824 - - - - - - - - 0.824 - tweety family member 2 [Source:HGNC Symbol;Acc:HGNC:13877]
65. SRGAP3 ENSGALG00000008378 4331 0.82 - - - - - - - - 0.820 - SLIT-ROBO Rho GTPase activating protein 3 [Source:NCBI gene;Acc:416115]
66. GRM4 ENSGALG00000002840 2250 0.814 - - - - - 0.814 - - - - glutamate receptor, metabotropic 4, transcript variant X2
67. NES ENSGALG00000013239 1708 0.812 - - - - - 0.812 - - - - nestin [Source:NCBI gene;Acc:395890]
68. HOXB-7 HOXB-7 2066 0.806 - - 0.806 - - - - - - -
69. CLVS1 ENSGALG00000043172 56 0.806 - - 0.806 - - - - - - - clavesin 1
70. CKB ENSGALG00000011511 2100 0.806 - - - - - - - - - 0.806 creatine kinase B [Source:NCBI gene;Acc:396248]
71. HOXA7 ENSGALG00000026989 6746 0.802 - - - - - - - - 0.802 - homeobox A7 [Source:NCBI gene;Acc:395290]
72. GPM6B ENSGALG00000016575 18 0.801 - - - - - 0.801 - - - - glycoprotein M6B [Source:NCBI gene;Acc:418632]
73. SHISA3 ENSGALG00000026042 1108 0.796 - - 0.796 - - - - - - - shisa family member 3 [Source:HGNC Symbol;Acc:HGNC:25159]
74. CNTN2 ENSGALG00000000653 219 0.795 - - - - - - - - - 0.795 contactin 2 [Source:NCBI gene;Acc:419825]
75. CRHR1 ENSGALG00000000371 94 0.792 - - - - - - - - - 0.792 corticotropin releasing hormone receptor 1 [Source:NCBI gene;Acc:374218]
76. FABP7 ENSGALG00000038933 6780 0.79 - - - - - - - - - 0.790 fatty acid binding protein 7 [Source:NCBI gene;Acc:396246]
77. ENSGALG00000022967 ENSGALG00000022967 240 0.788 - - - - - 0.788 - - - -
78. GABRG2 ENSGALG00000038042 211 0.787 - - 0.787 - - - - - - - gamma-aminobutyric acid type A receptor gamma2 subunit [Source:NCBI gene;Acc:396289]
79. DLL1 ENSGALG00000011182 1613 0.786 - - - - - - - - - 0.786 delta like canonical Notch ligand 1 [Source:NCBI gene;Acc:395820]
80. SLC32A1 ENSGALG00000038919 61 0.785 - - - - - - 0.785 - - - solute carrier family 32 member 1 [Source:HGNC Symbol;Acc:HGNC:11018]
81. Sep-03 Sep-03 109 0.784 - - - - - - - - - 0.784
82. CDH22 ENSGALG00000007211 250 0.784 - - 0.784 - - - - - - - cadherin 22 [Source:HGNC Symbol;Acc:HGNC:13251]
83. UNC45B ENSGALG00000002186 399 0.784 - - - - - - 0.784 - - - unc-45 myosin chaperone B [Source:HGNC Symbol;Acc:HGNC:14304]
84. TRIM9 ENSGALG00000012367 1267 0.776 - - - - - 0.776 - - - - tripartite motif containing 9 [Source:HGNC Symbol;Acc:HGNC:16288]
85. PCDH8 ENSGALG00000036258 1945 0.775 - - - - - - - - - 0.775 protocadherin 8 [Source:NCBI gene;Acc:428065]
86. PPP1R17 ENSGALG00000036390 2418 0.773 - - - - - - - - 0.773 - protein phosphatase 1 regulatory subunit 17 [Source:HGNC Symbol;Acc:HGNC:16973]
87. NOVA1 ENSGALG00000009850 7584 0.772 - - - - - - - - - 0.772 uncharacterized LOC423300 [Source:NCBI gene;Acc:423300]
88. DACH1 ENSGALG00000037015 5648 0.77 - - - - - - - - - 0.770 dachshund family transcription factor 1 [Source:NCBI gene;Acc:373935]
89. SOHO-1 ENSGALG00000015599 110 0.758 - - - - - - - - 0.758 - sensory organ homeobox protein SOHo [Source:NCBI gene;Acc:396346]
90. GPSM1 ENSGALG00000001797 943 0.756 - - - - - 0.756 - - - - G protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
91. NELL1 ENSGALG00000003777 588 0.755 - - - - - - - - - 0.755 neural EGFL like 1 [Source:HGNC Symbol;Acc:HGNC:7750]
92. GABRA3 ENSGALG00000007269 985 0.755 - - - - - - - - 0.755 - gamma-aminobutyric acid type A receptor alpha3 subunit [Source:HGNC Symbol;Acc:HGNC:4077]
93. WNK2 ENSGALG00000038850 4712 0.753 - - - - - - - - - 0.753 WNK lysine deficient protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14542]
94. SCRN1 ENSGALG00000011176 3783 0.752 - - - - - - - - - 0.752 secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
95. EPHA3 ENSGALG00000015403 9811 0.752 - - - 0.752 - - - - - - EPH receptor A3 [Source:NCBI gene;Acc:396402]
96. INA ENSGALG00000028238 208 0.751 - - - - - - - - 0.751 - internexin neuronal intermediate filament protein alpha
97. RASSF2 ENSGALG00000030432 4822 0.75 - - - - - - - - 0.750 - Ras association domain family member 2 [Source:NCBI gene;Acc:419521]
98. VIMENTIN VIMENTIN 33105 0.749 - - - - - - - - - 0.749
99. MIF ENSGALG00000006326 109683 0.746 - - 0.746 - - - - - - - macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
100. SDK2 ENSGALG00000031895 2682 0.745 - - - - - 0.745 - - - - sidekick cell adhesion molecule 2 [Source:NCBI gene;Acc:395215]

There are 62 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA