Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Msx3

Gene Name Gene ID Reads Annotation
Msx3 ENSMUSG00000025469 236 msh homeobox 3 [Source:MGI Symbol;Acc:MGI:106587]







Genes with expression patterns similar to Msx3

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Msx3 ENSMUSG00000025469 236 6 1.000 1.000 1.000 1.000 1.000 1.000 msh homeobox 3 [Source:MGI Symbol;Acc:MGI:106587]
2. Fgf15 ENSMUSG00000031073 527 4.84 0.756 0.792 0.907 0.846 0.753 0.786 fibroblast growth factor 15 [Source:MGI Symbol;Acc:MGI:1096383]
3. Olig3 ENSMUSG00000045591 1049 4.11 0.815 0.730 0.981 0.714 - 0.870 oligodendrocyte transcription factor 3 [Source:MGI Symbol;Acc:MGI:2149955]
4. Sox2 ENSMUSG00000074637 8409 3.878 0.874 - 0.734 0.786 0.748 0.736 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
5. Pou3f2 ENSMUSG00000095139 2416 3.75 0.828 0.701 0.736 0.750 - 0.735 POU domain, class 3, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101895]
6. Draxin ENSMUSG00000029005 726 3.209 0.837 0.715 0.859 0.798 - - dorsal inhibitory axon guidance protein [Source:MGI Symbol;Acc:MGI:1917683]
7. C130071C03Rik ENSMUSG00000050334 1582 3.115 0.822 - 0.746 0.806 - 0.741 RIKEN cDNA C130071C03 gene [Source:MGI Symbol;Acc:MGI:2443574]
8. Slain1 ENSMUSG00000055717 237 3.014 0.748 0.741 - - 0.740 0.785 SLAIN motif family, member 1 [Source:MGI Symbol;Acc:MGI:2145578]
9. Zic5 ENSMUSG00000041703 1240 2.592 0.821 - 0.950 0.821 - - zinc finger protein of the cerebellum 5 [Source:MGI Symbol;Acc:MGI:1929518]
10. Gbx2 ENSMUSG00000034486 478 2.586 0.942 0.790 - - 0.854 - gastrulation brain homeobox 2 [Source:MGI Symbol;Acc:MGI:95668]
11. Celsr1 ENSMUSG00000016028 500 2.495 0.895 0.753 0.847 - - - cadherin, EGF LAG seven-pass G-type receptor 1 [Source:MGI Symbol;Acc:MGI:1100883]
12. Fzd10 ENSMUSG00000081683 998 2.485 - 0.726 0.900 0.859 - - frizzled class receptor 10 [Source:MGI Symbol;Acc:MGI:2136761]
13. Igfbpl1 ENSMUSG00000035551 856 2.457 0.817 - 0.904 0.736 - - insulin-like growth factor binding protein-like 1 [Source:MGI Symbol;Acc:MGI:1933198]
14. Wscd1 ENSMUSG00000020811 318 2.444 - - 0.911 - 0.708 0.825 WSC domain containing 1 [Source:MGI Symbol;Acc:MGI:2448493]
15. Pou3f1 ENSMUSG00000090125 496 2.411 0.839 - 0.835 - - 0.737 POU domain, class 3, transcription factor 1 [Source:MGI Symbol;Acc:MGI:101896]
16. Ildr2 ENSMUSG00000040612 1142 2.358 0.784 - 0.779 - 0.795 - immunoglobulin-like domain containing receptor 2 [Source:MGI Symbol;Acc:MGI:1196370]
17. Ddn ENSMUSG00000059213 51 2.352 - 0.801 0.835 0.716 - - dendrin [Source:MGI Symbol;Acc:MGI:108101]
18. Jam2 ENSMUSG00000053062 1020 2.334 0.739 - 0.827 0.768 - - junction adhesion molecule 2 [Source:MGI Symbol;Acc:MGI:1933820]
19. Dcc ENSMUSG00000060534 107 2.33 0.737 - - 0.892 0.701 - deleted in colorectal carcinoma [Source:MGI Symbol;Acc:MGI:94869]
20. Dll1 ENSMUSG00000014773 633 2.322 - - 0.876 - 0.730 0.716 delta like canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:104659]
21. Wnt3a ENSMUSG00000009900 70 2.278 - 0.723 0.849 - - 0.706 wingless-type MMTV integration site family, member 3A [Source:MGI Symbol;Acc:MGI:98956]
22. Slc1a2 ENSMUSG00000005089 830 2.154 0.708 - - 0.708 0.738 - solute carrier family 1 (glial high affinity glutamate transporter), member 2 [Source:MGI Symbol;Acc:MGI:101931]
23. Prdm13 ENSMUSG00000040478 193 1.597 0.825 - - - 0.772 - PR domain containing 13 [Source:MGI Symbol;Acc:MGI:2448528]
24. Tmem163 ENSMUSG00000026347 282 1.596 - - - 0.774 - 0.822 transmembrane protein 163 [Source:MGI Symbol;Acc:MGI:1919410]
25. Sp5 ENSMUSG00000075304 106 1.591 0.802 - 0.789 - - - trans-acting transcription factor 5 [Source:MGI Symbol;Acc:MGI:1927715]
26. Wnt1 ENSMUSG00000022997 961 1.58 - - 0.835 0.745 - - wingless-type MMTV integration site family, member 1 [Source:MGI Symbol;Acc:MGI:98953]
27. Ndp ENSMUSG00000040138 63 1.572 0.780 0.792 - - - - Norrie disease (pseudoglioma) (human) [Source:MGI Symbol;Acc:MGI:102570]
28. Barhl1 ENSMUSG00000026805 447 1.567 - - 0.833 0.734 - - BarH like homeobox 1 [Source:MGI Symbol;Acc:MGI:1859288]
29. Atoh1 ENSMUSG00000073043 396 1.55 - - 0.835 0.715 - - atonal bHLH transcription factor 1 [Source:MGI Symbol;Acc:MGI:104654]
30. Hoxb1 ENSMUSG00000018973 357 1.535 0.814 0.721 - - - - homeobox B1 [Source:MGI Symbol;Acc:MGI:96182]
31. Pax3 ENSMUSG00000004872 3095 1.533 0.833 - - 0.700 - - paired box 3 [Source:MGI Symbol;Acc:MGI:97487]
32. Pou3f4 ENSMUSG00000056854 95 1.53 0.740 - - 0.790 - - POU domain, class 3, transcription factor 4 [Source:MGI Symbol;Acc:MGI:101894]
33. Msi1 ENSMUSG00000054256 13785 1.522 - - - 0.729 - 0.793 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
34. Rassf4 ENSMUSG00000042129 1399 1.519 - - 0.808 0.711 - - Ras association (RalGDS/AF-6) domain family member 4 [Source:MGI Symbol;Acc:MGI:2386853]
35. Dtx4 ENSMUSG00000039982 2901 1.515 - - 0.779 0.736 - - deltex 4, E3 ubiquitin ligase [Source:MGI Symbol;Acc:MGI:2672905]
36. Zic4 ENSMUSG00000036972 1968 1.513 - - - 0.753 0.760 - zinc finger protein of the cerebellum 4 [Source:MGI Symbol;Acc:MGI:107201]
37. Cspg5 ENSMUSG00000032482 105 1.512 - - 0.769 - - 0.743 chondroitin sulfate proteoglycan 5 [Source:MGI Symbol;Acc:MGI:1352747]
38. 2610035F20Rik ENSMUSG00000085555 139 1.458 0.718 - - 0.740 - - RIKEN cDNA 2610035F20 gene [Source:MGI Symbol;Acc:MGI:1916498]
39. Fabp7 ENSMUSG00000019874 3183 1.453 0.723 - - - 0.730 - fatty acid binding protein 7, brain [Source:MGI Symbol;Acc:MGI:101916]
40. Lrrc4 ENSMUSG00000049939 109 1.438 0.733 - - 0.705 - - leucine rich repeat containing 4 [Source:MGI Symbol;Acc:MGI:2182081]
41. Nuak2 ENSMUSG00000009772 426 1.434 - - 0.722 - - 0.712 NUAK family, SNF1-like kinase, 2 [Source:MGI Symbol;Acc:MGI:1921387]
42. Sema5b ENSMUSG00000052133 891 1.428 0.723 - - - - 0.705 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B [Source:MGI Symbol;Acc:MGI:107555]
43. Igsf8 ENSMUSG00000038034 9546 1.422 - - - 0.710 - 0.712 immunoglobulin superfamily, member 8 [Source:MGI Symbol;Acc:MGI:2154090]
44. Hoxb9 ENSMUSG00000020875 2764 1.42 0.704 - - 0.716 - - homeobox B9 [Source:MGI Symbol;Acc:MGI:96190]
45. Fbxo44 ENSMUSG00000029001 119 1.416 - 0.704 0.712 - - - F-box protein 44 [Source:MGI Symbol;Acc:MGI:1354744]
46. Wdr65 Wdr65 40 0.907 - - 0.907 - - -
47. Rfx4 ENSMUSG00000020037 455 0.888 0.888 - - - - - regulatory factor X, 4 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1918387]
48. Lhx2 ENSMUSG00000000247 529 0.884 - - - - - 0.884 LIM homeobox protein 2 [Source:MGI Symbol;Acc:MGI:96785]
49. Cntnap2 ENSMUSG00000039419 230 0.883 - - 0.883 - - - contactin associated protein-like 2 [Source:MGI Symbol;Acc:MGI:1914047]
50. 2010315B03Rik ENSMUSG00000074829, ENSMUSG00000098810 29 0.875 - - 0.875 - - - RIKEN cDNA 2010315B03 gene [Source:MGI Symbol;Acc:MGI:1919321]
51. Gm973 ENSMUSG00000047361 11 0.87 - - 0.870 - - - predicted gene 973 [Source:MGI Symbol;Acc:MGI:2685819]
52. Irx2 ENSMUSG00000001504 819 0.869 0.869 - - - - - Iroquois homeobox 2 [Source:MGI Symbol;Acc:MGI:1197526]
53. Ap3m2 ENSMUSG00000031539 134 0.865 - - 0.865 - - - adaptor-related protein complex 3, mu 2 subunit [Source:MGI Symbol;Acc:MGI:1929214]
54. Gm7860 ENSMUSG00000082535 15 0.858 - - 0.858 - - - predicted gene 7860 [Source:MGI Symbol;Acc:MGI:3644843]
55. Zfp663 ENSMUSG00000056824 62 0.849 - - 0.849 - - - zinc finger protein 663 [Source:MGI Symbol;Acc:MGI:2685854]
56. Gm26801 ENSMUSG00000097892 60 0.848 - - 0.848 - - - predicted gene, 26801 [Source:MGI Symbol;Acc:MGI:5477295]
57. Fbxo2 ENSMUSG00000041556 15 0.848 - - 0.848 - - - F-box protein 2 [Source:MGI Symbol;Acc:MGI:2446216]
58. Vcl ENSMUSG00000021823 49 0.847 - - 0.847 - - - vinculin [Source:MGI Symbol;Acc:MGI:98927]
59. Fam71e1 ENSMUSG00000051113 33 0.846 - - 0.846 - - - family with sequence similarity 71, member E1 [Source:MGI Symbol;Acc:MGI:1922788]
60. Gm27032 ENSMUSG00000098051 80 0.846 - - 0.846 - - - predicted gene, 27032 [Source:MGI Symbol;Acc:MGI:5504147]
61. Pla2g7 ENSMUSG00000023913 28 0.843 - - 0.843 - - - phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) [Source:MGI Symbol;Acc:MGI:1351327]
62. Gm24616 ENSMUSG00000065208 48 0.841 - - 0.841 - - - predicted gene, 24616 [Source:MGI Symbol;Acc:MGI:5454393]
63. Pcdh8 ENSMUSG00000036422 452 0.84 0.840 - - - - - protocadherin 8 [Source:MGI Symbol;Acc:MGI:1306800]
64. 3100002H09Rik ENSMUSG00000051219 11 0.838 - - 0.838 - - - RIKEN cDNA 3100002H09 gene [Source:MGI Symbol;Acc:MGI:1917499]
65. Gm15366 ENSMUSG00000080726 11 0.838 - - 0.838 - - - predicted gene 15366 [Source:MGI Symbol;Acc:MGI:3709611]
66. 2310042D19Rik 2310042D19Rik 7 0.837 - - 0.837 - - -
67. Gm24611 ENSMUSG00000065206 4 0.835 - - 0.835 - - - predicted gene, 24611 [Source:MGI Symbol;Acc:MGI:5454388]
68. Ccr9 ENSMUSG00000029530 12 0.835 - - 0.835 - - - chemokine (C-C motif) receptor 9 [Source:MGI Symbol;Acc:MGI:1341902]
69. Gm24049 ENSMUSG00000076364 20 0.835 - - 0.835 - - - predicted gene, 24049 [Source:MGI Symbol;Acc:MGI:5453826]
70. Gm16585 ENSMUSG00000089657 13 0.835 - - 0.835 - - - predicted gene 16585 [Source:MGI Symbol;Acc:MGI:4415005]
71. Gm12412 ENSMUSG00000083685 7 0.835 - - 0.835 - - - predicted gene 12412 [Source:MGI Symbol;Acc:MGI:3649919]
72. Syp ENSMUSG00000031144 41 0.833 - - 0.833 - - - synaptophysin [Source:MGI Symbol;Acc:MGI:98467]
73. Tldc1 ENSMUSG00000034105 8 0.833 - - 0.833 - - - TBC/LysM associated domain containing 1 [Source:MGI Symbol;Acc:MGI:1921597]
74. Nlrc4 ENSMUSG00000039193 9 0.833 - - 0.833 - - - NLR family, CARD domain containing 4 [Source:MGI Symbol;Acc:MGI:3036243]
75. Rccd1 ENSMUSG00000038930 21 0.832 - - 0.832 - - - RCC1 domain containing 1 [Source:MGI Symbol;Acc:MGI:2444156]
76. Gm11280 ENSMUSG00000085393 24 0.831 - - 0.831 - - - predicted gene 11280 [Source:MGI Symbol;Acc:MGI:3705200]
77. Ddx43 ENSMUSG00000070291 17 0.831 - - 0.831 - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Source:MGI Symbol;Acc:MGI:3642857]
78. Gm11615 ENSMUSG00000085083 13 0.827 - - 0.827 - - - predicted gene 11615 [Source:MGI Symbol;Acc:MGI:3652280]
79. Gm14634 ENSMUSG00000085891 18 0.825 - - 0.825 - - - predicted gene 14634 [Source:MGI Symbol;Acc:MGI:3705147]
80. Rgs9 ENSMUSG00000020599 31 0.824 - - 0.824 - - - regulator of G-protein signaling 9 [Source:MGI Symbol;Acc:MGI:1338824]
81. Fn3k ENSMUSG00000025175 18 0.824 - - 0.824 - - - fructosamine 3 kinase [Source:MGI Symbol;Acc:MGI:1926834]
82. Gm13039 ENSMUSG00000083826 11 0.823 - - 0.823 - - - predicted gene 13039 [Source:MGI Symbol;Acc:MGI:3649997]
83. Brsk2 ENSMUSG00000053046 398 0.822 - - 0.822 - - - BR serine/threonine kinase 2 [Source:MGI Symbol;Acc:MGI:1923020]
84. Gm12840 ENSMUSG00000086320 98 0.821 - - 0.821 - - - predicted gene 12840 [Source:MGI Symbol;Acc:MGI:3650917]
85. Rpsa-ps9 ENSMUSG00000082895 35 0.821 - - 0.821 - - - ribosomal protein SA, pseudogene 9 [Source:MGI Symbol;Acc:MGI:3650393]
86. Pard6a ENSMUSG00000005699 236 0.82 - - 0.820 - - - par-6 family cell polarity regulator alpha [Source:MGI Symbol;Acc:MGI:1927223]
87. Spata13 ENSMUSG00000021990 1020 0.82 0.820 - - - - - spermatogenesis associated 13 [Source:MGI Symbol;Acc:MGI:104838]
88. Hist1h2bg ENSMUSG00000058385 62 0.82 - - 0.820 - - - histone cluster 1, H2bg [Source:MGI Symbol;Acc:MGI:2448386]
89. Gm25635 ENSMUSG00000064609 19 0.82 - - 0.820 - - - predicted gene, 25635 [Source:MGI Symbol;Acc:MGI:5455412]
90. Cav2 ENSMUSG00000000058 36 0.819 - - 0.819 - - - caveolin 2 [Source:MGI Symbol;Acc:MGI:107571]
91. Hectd2 ENSMUSG00000041180 34 0.819 - - 0.819 - - - HECT domain E3 ubiquitin protein ligase 2 [Source:MGI Symbol;Acc:MGI:2442663]
92. Rxfp2 ENSMUSG00000053368 56 0.817 - - 0.817 - - - relaxin/insulin-like family peptide receptor 2 [Source:MGI Symbol;Acc:MGI:2153463]
93. Hoxa3 ENSMUSG00000079560 57 0.817 - - 0.817 - - - homeobox A3 [Source:MGI Symbol;Acc:MGI:96175]
94. Sep-01 Sep-01 32 0.816 - - 0.816 - - -
95. Hap1 ENSMUSG00000006930 613 0.812 0.812 - - - - - huntingtin-associated protein 1 [Source:MGI Symbol;Acc:MGI:1261831]
96. 1700030J22Rik ENSMUSG00000031847 46 0.812 - - 0.812 - - - RIKEN cDNA 1700030J22 gene [Source:MGI Symbol;Acc:MGI:1916778]
97. Gck ENSMUSG00000041798 24 0.811 - - 0.811 - - - glucokinase [Source:MGI Symbol;Acc:MGI:1270854]
98. Nfatc2ip ENSMUSG00000030722 920 0.811 - - 0.811 - - - nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein [Source:MGI Symbol;Acc:MGI:1329015]
99. Hsd3b6 ENSMUSG00000027869 152 0.809 - - 0.809 - - - hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6 [Source:MGI Symbol;Acc:MGI:109598]
100. Wnt9a ENSMUSG00000000126 90 0.806 - - 0.806 - - - wingless-type MMTV integration site family, member 9A [Source:MGI Symbol;Acc:MGI:2446084]

There are 114 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA