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Results for Msi1

Gene Name Gene ID Reads Annotation
Msi1 ENSMUSG00000054256 13785 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]







Genes with expression patterns similar to Msi1

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Msi1 ENSMUSG00000054256 13785 6 1.000 1.000 1.000 1.000 1.000 1.000 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
2. Sox2 ENSMUSG00000074637 8409 2.552 - - - 0.924 0.812 0.816 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
3. C130071C03Rik ENSMUSG00000050334 1582 2.498 - - - 0.914 0.751 0.833 RIKEN cDNA C130071C03 gene [Source:MGI Symbol;Acc:MGI:2443574]
4. 2610017I09Rik 2610017I09Rik 1595 2.453 - - - 0.831 0.759 0.863
5. AI854517 AI854517 539 2.431 - - - 0.770 0.808 0.853
6. Rhbdl3 ENSMUSG00000017692 783 2.412 - - - 0.769 0.821 0.822 rhomboid like 3 [Source:MGI Symbol;Acc:MGI:2179276]
7. Sox3 ENSMUSG00000045179 1137 2.39 - - 0.780 0.782 - 0.828 SRY (sex determining region Y)-box 3 [Source:MGI Symbol;Acc:MGI:98365]
8. Zic4 ENSMUSG00000036972 1968 2.382 - - - 0.874 0.804 0.704 zinc finger protein of the cerebellum 4 [Source:MGI Symbol;Acc:MGI:107201]
9. Wscd1 ENSMUSG00000020811 318 2.374 - - - 0.752 0.811 0.811 WSC domain containing 1 [Source:MGI Symbol;Acc:MGI:2448493]
10. Rfx4 ENSMUSG00000020037 455 2.37 - - 0.816 0.740 - 0.814 regulatory factor X, 4 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1918387]
11. Gpr98 Gpr98 1797 2.356 - - 0.797 0.773 - 0.786
12. Igsf8 ENSMUSG00000038034 9546 2.354 - - - 0.850 0.792 0.712 immunoglobulin superfamily, member 8 [Source:MGI Symbol;Acc:MGI:2154090]
13. Dll1 ENSMUSG00000014773 633 2.346 - - - 0.757 0.748 0.841 delta like canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:104659]
14. Nhlh2 ENSMUSG00000048540 1310 2.327 - - - 0.830 0.706 0.791 nescient helix loop helix 2 [Source:MGI Symbol;Acc:MGI:97324]
15. Celsr2 ENSMUSG00000068740 2010 2.28 - - 0.756 0.806 - 0.718 cadherin, EGF LAG seven-pass G-type receptor 2 [Source:MGI Symbol;Acc:MGI:1858235]
16. Pea15a ENSMUSG00000013698 6011 2.276 - - 0.745 0.796 - 0.735 phosphoprotein enriched in astrocytes 15A [Source:MGI Symbol;Acc:MGI:104799]
17. Rnf165 ENSMUSG00000025427 2394 2.273 - - - 0.764 0.725 0.784 ring finger protein 165 [Source:MGI Symbol;Acc:MGI:2444521]
18. Phyhipl ENSMUSG00000037747 636 2.269 - - 0.739 0.810 0.720 - phytanoyl-CoA hydroxylase interacting protein-like [Source:MGI Symbol;Acc:MGI:1918161]
19. Srgap3 ENSMUSG00000030257 2941 2.262 - - 0.714 0.743 - 0.805 SLIT-ROBO Rho GTPase activating protein 3 [Source:MGI Symbol;Acc:MGI:2152938]
20. Ago1 ENSMUSG00000041530 7703 2.207 - - - 0.764 0.706 0.737 argonaute RISC catalytic subunit 1 [Source:MGI Symbol;Acc:MGI:2446630]
21. RP24-113D21.1 RP24-113D21.1 685 2.135 - - - 0.704 0.707 0.724
22. Pou3f2 ENSMUSG00000095139 2416 1.753 - - - 0.913 - 0.840 POU domain, class 3, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101895]
23. Slc1a2 ENSMUSG00000005089 830 1.666 - - - 0.843 0.823 - solute carrier family 1 (glial high affinity glutamate transporter), member 2 [Source:MGI Symbol;Acc:MGI:101931]
24. Zic1 ENSMUSG00000032368 7734 1.665 - - - 0.889 - 0.776 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
25. Phf21b ENSMUSG00000016624 849 1.653 - - 0.804 0.849 - - PHD finger protein 21B [Source:MGI Symbol;Acc:MGI:2443812]
26. Ckb ENSMUSG00000001270 8443 1.632 - - 0.719 0.913 - - creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
27. Nrarp ENSMUSG00000078202 1708 1.613 - - - 0.808 0.805 - Notch-regulated ankyrin repeat protein [Source:MGI Symbol;Acc:MGI:1914372]
28. Tubb2b ENSMUSG00000045136 41060 1.613 - - - 0.835 - 0.778 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
29. Sema5b ENSMUSG00000052133 891 1.602 - - - 0.805 - 0.797 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B [Source:MGI Symbol;Acc:MGI:107555]
30. Hes5 ENSMUSG00000048001 1640 1.602 - - - 0.808 - 0.794 hes family bHLH transcription factor 5 [Source:MGI Symbol;Acc:MGI:104876]
31. Pou3f3 ENSMUSG00000045515 5137 1.592 - - - 0.873 0.719 - POU domain, class 3, transcription factor 3 [Source:MGI Symbol;Acc:MGI:102564]
32. Igfbpl1 ENSMUSG00000035551 856 1.588 - - - 0.797 - 0.791 insulin-like growth factor binding protein-like 1 [Source:MGI Symbol;Acc:MGI:1933198]
33. Dll3 ENSMUSG00000003436 1086 1.586 - - - 0.733 - 0.853 delta like canonical Notch ligand 3 [Source:MGI Symbol;Acc:MGI:1096877]
34. Miat ENSMUSG00000097767 4258 1.583 - - - 0.836 - 0.747 myocardial infarction associated transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444886]
35. Hoxd3 ENSMUSG00000079277 3066 1.575 - - 0.779 0.796 - - homeobox D3 [Source:MGI Symbol;Acc:MGI:96207]
36. Trim2 ENSMUSG00000027993 3587 1.562 - - - 0.796 - 0.766 tripartite motif-containing 2 [Source:MGI Symbol;Acc:MGI:1933163]
37. Enc1 ENSMUSG00000041773 2185 1.561 - - - 0.808 - 0.753 ectodermal-neural cortex 1 [Source:MGI Symbol;Acc:MGI:109610]
38. Slain1 ENSMUSG00000055717 237 1.543 - - - - 0.752 0.791 SLAIN motif family, member 1 [Source:MGI Symbol;Acc:MGI:2145578]
39. Ncan ENSMUSG00000002341 521 1.536 - - - 0.777 - 0.759 neurocan [Source:MGI Symbol;Acc:MGI:104694]
40. Pgpep1 ENSMUSG00000056204 2455 1.533 - - - 0.753 - 0.780 pyroglutamyl-peptidase I [Source:MGI Symbol;Acc:MGI:1913772]
41. Fgf15 ENSMUSG00000031073 527 1.531 - - - - 0.775 0.756 fibroblast growth factor 15 [Source:MGI Symbol;Acc:MGI:1096383]
42. Msx3 ENSMUSG00000025469 236 1.522 - - - 0.729 - 0.793 msh homeobox 3 [Source:MGI Symbol;Acc:MGI:106587]
43. Tmem163 ENSMUSG00000026347 282 1.521 - - - 0.725 - 0.796 transmembrane protein 163 [Source:MGI Symbol;Acc:MGI:1919410]
44. Hoxc9 ENSMUSG00000036139 4145 1.52 - - 0.720 0.800 - - homeobox C9 [Source:MGI Symbol;Acc:MGI:96199]
45. Vim ENSMUSG00000026728 27519 1.515 0.704 - - 0.811 - - vimentin [Source:MGI Symbol;Acc:MGI:98932]
46. Fabp7 ENSMUSG00000019874 3183 1.515 - - - 0.782 - 0.733 fatty acid binding protein 7, brain [Source:MGI Symbol;Acc:MGI:101916]
47. Apba2 ENSMUSG00000030519 840 1.513 - - - 0.764 0.749 - amyloid beta (A4) precursor protein-binding, family A, member 2 [Source:MGI Symbol;Acc:MGI:1261791]
48. Mkrn1 ENSMUSG00000029922 1839 1.499 - - - 0.770 - 0.729 makorin, ring finger protein, 1 [Source:MGI Symbol;Acc:MGI:1859353]
49. Rmst ENSMUSG00000112117 594 1.496 - - - 0.700 - 0.796 rhabdomyosarcoma 2 associated transcript (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1099806]
50. Hes6 ENSMUSG00000067071 1692 1.493 - - 0.785 0.708 - - hairy and enhancer of split 6 [Source:MGI Symbol;Acc:MGI:1859852]
51. Pou3f1 ENSMUSG00000090125 496 1.474 - - - 0.707 - 0.767 POU domain, class 3, transcription factor 1 [Source:MGI Symbol;Acc:MGI:101896]
52. Spsb4 ENSMUSG00000046997 5432 1.473 - - 0.768 0.705 - - splA/ryanodine receptor domain and SOCS box containing 4 [Source:MGI Symbol;Acc:MGI:2183445]
53. Gm3764 ENSMUSG00000097156 474 1.472 - - - 0.734 0.738 - predicted gene 3764 [Source:MGI Symbol;Acc:MGI:3781938]
54. Nrep ENSMUSG00000042834 16031 1.465 - - 0.723 0.742 - - neuronal regeneration related protein [Source:MGI Symbol;Acc:MGI:99444]
55. Gbx2 ENSMUSG00000034486 478 1.465 - - 0.705 0.760 - - gastrulation brain homeobox 2 [Source:MGI Symbol;Acc:MGI:95668]
56. Chrna4 ENSMUSG00000027577 941 1.444 - - - 0.724 - 0.720 cholinergic receptor, nicotinic, alpha polypeptide 4 [Source:MGI Symbol;Acc:MGI:87888]
57. Dtx4 ENSMUSG00000039982 2901 0.868 - - - 0.868 - - deltex 4, E3 ubiquitin ligase [Source:MGI Symbol;Acc:MGI:2672905]
58. Jam2 ENSMUSG00000053062 1020 0.866 - - - 0.866 - - junction adhesion molecule 2 [Source:MGI Symbol;Acc:MGI:1933820]
59. Zic3 ENSMUSG00000067860 549 0.85 - - - 0.850 - - zinc finger protein of the cerebellum 3 [Source:MGI Symbol;Acc:MGI:106676]
60. Trp53i11 ENSMUSG00000068735 15944 0.848 - - - 0.848 - - transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
61. Cntn2 ENSMUSG00000053024 1798 0.84 - - - 0.840 - - contactin 2 [Source:MGI Symbol;Acc:MGI:104518]
62. Fzd10 ENSMUSG00000081683 998 0.838 - - - 0.838 - - frizzled class receptor 10 [Source:MGI Symbol;Acc:MGI:2136761]
63. Hoxb9 ENSMUSG00000020875 2764 0.832 - - - 0.832 - - homeobox B9 [Source:MGI Symbol;Acc:MGI:96190]
64. Nuak2 ENSMUSG00000009772 426 0.822 - - - - - 0.822 NUAK family, SNF1-like kinase, 2 [Source:MGI Symbol;Acc:MGI:1921387]
65. Cspg5 ENSMUSG00000032482 105 0.813 - - - - - 0.813 chondroitin sulfate proteoglycan 5 [Source:MGI Symbol;Acc:MGI:1352747]
66. Sall1 ENSMUSG00000031665 769 0.812 - - 0.812 - - - spalt like transcription factor 1 [Source:MGI Symbol;Acc:MGI:1889585]
67. Glra1 ENSMUSG00000000263 586 0.807 - - - - - 0.807 glycine receptor, alpha 1 subunit [Source:MGI Symbol;Acc:MGI:95747]
68. Pax3 ENSMUSG00000004872 3095 0.802 - - - 0.802 - - paired box 3 [Source:MGI Symbol;Acc:MGI:97487]
69. Nat8l ENSMUSG00000048142 281 0.8 - - - - - 0.800 N-acetyltransferase 8-like [Source:MGI Symbol;Acc:MGI:2447776]
70. Zic2 ENSMUSG00000061524 472 0.8 - - - 0.800 - - zinc finger protein of the cerebellum 2 [Source:MGI Symbol;Acc:MGI:106679]
71. Tuba1a ENSMUSG00000072235 51129 0.793 - - - 0.793 - - tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
72. Soga3 ENSMUSG00000038916 3972 0.793 - - - 0.793 - - SOGA family member 3 [Source:MGI Symbol;Acc:MGI:1914662]
73. Tox3 ENSMUSG00000043668 4413 0.791 - - - - - 0.791 TOX high mobility group box family member 3 [Source:MGI Symbol;Acc:MGI:3039593]
74. Ebf1 ENSMUSG00000057098 3112 0.787 - - - 0.787 - - early B cell factor 1 [Source:MGI Symbol;Acc:MGI:95275]
75. 2510009E07Rik ENSMUSG00000043391 672 0.785 - - - 0.785 - - RIKEN cDNA 2510009E07 gene [Source:MGI Symbol;Acc:MGI:1919440]
76. Nes ENSMUSG00000004891 8017 0.784 - - - 0.784 - - nestin [Source:MGI Symbol;Acc:MGI:101784]
77. Draxin ENSMUSG00000029005 726 0.783 - - - 0.783 - - dorsal inhibitory axon guidance protein [Source:MGI Symbol;Acc:MGI:1917683]
78. Hoxc6 ENSMUSG00000001661 9818 0.781 - - - 0.781 - - homeobox C6 [Source:MGI Symbol;Acc:MGI:96197]
79. Hoxb6 ENSMUSG00000000690 1321 0.781 - - - 0.781 - - homeobox B6 [Source:MGI Symbol;Acc:MGI:96187]
80. Sall3 ENSMUSG00000024565 449 0.777 - - - 0.777 - - spalt like transcription factor 3 [Source:MGI Symbol;Acc:MGI:109295]
81. Tagln3 ENSMUSG00000022658 6054 0.774 - - - 0.774 - - transgelin 3 [Source:MGI Symbol;Acc:MGI:1926784]
82. Nhlh1 ENSMUSG00000051251 2017 0.773 - - - 0.773 - - nescient helix loop helix 1 [Source:MGI Symbol;Acc:MGI:98481]
83. Abcd2 ENSMUSG00000055782 498 0.772 - - - - - 0.772 ATP-binding cassette, sub-family D (ALD), member 2 [Source:MGI Symbol;Acc:MGI:1349467]
84. Lect1 122 0.769 - - 0.769 - - - leukocyte cell derived chemotaxin 1, transcript variant X3
85. Zfp536 ENSMUSG00000043456 869 0.768 - - - 0.768 - - zinc finger protein 536 [Source:MGI Symbol;Acc:MGI:1926102]
86. Btg2 ENSMUSG00000020423 1222 0.768 - - - 0.768 - - B cell translocation gene 2, anti-proliferative [Source:MGI Symbol;Acc:MGI:108384]
87. Gpm6b ENSMUSG00000031342 715 0.768 - - - - - 0.768 glycoprotein m6b [Source:MGI Symbol;Acc:MGI:107672]
88. Cdk5r2 ENSMUSG00000090071 67 0.767 - - 0.767 - - - cyclin-dependent kinase 5, regulatory subunit 2 (p39) [Source:MGI Symbol;Acc:MGI:1330828]
89. Pou2f2 ENSMUSG00000008496 362 0.764 - - - - - 0.764 POU domain, class 2, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101897]
90. Robo3 ENSMUSG00000032128 389 0.763 - - - 0.763 - - roundabout guidance receptor 3 [Source:MGI Symbol;Acc:MGI:1343102]
91. Sox1 ENSMUSG00000096014 349 0.761 - - - - - 0.761 SRY (sex determining region Y)-box 1 [Source:MGI Symbol;Acc:MGI:98357]
92. Tubb3 ENSMUSG00000062380 9211 0.757 - - - 0.757 - - tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
93. Pdpn ENSMUSG00000028583, ENSMUSG00000096951 1719 0.756 - - - 0.756 - - podoplanin [Source:MGI Symbol;Acc:MGI:103098]
94. Camk2n2 ENSMUSG00000051146 132 0.754 - - - 0.754 - - calcium/calmodulin-dependent protein kinase II inhibitor 2 [Source:MGI Symbol;Acc:MGI:1920297]
95. Lhfpl4 ENSMUSG00000042873 331 0.754 - - - 0.754 - - lipoma HMGIC fusion partner-like protein 4 [Source:MGI Symbol;Acc:MGI:3057108]
96. Hoxd1 ENSMUSG00000042448 332 0.753 - - - 0.753 - - homeobox D1 [Source:MGI Symbol;Acc:MGI:96201]
97. Sox2ot ENSMUSG00000105265 475 0.752 - - - 0.752 - - SOX2 overlapping transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444112]
98. Map1b ENSMUSG00000052727 28977 0.751 - - - 0.751 - - microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
99. E2f1 ENSMUSG00000027490 2357 0.751 - - - - - 0.751 E2F transcription factor 1 [Source:MGI Symbol;Acc:MGI:101941]
100. Crabp1 ENSMUSG00000032291 40831 0.742 - - - 0.742 - - cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]

There are 36 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA