Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for MSX2

Gene Name Gene ID Reads Annotation
MSX2 ENSGALG00000038848 6950 msh homeobox 2 [Source:NCBI gene;Acc:395245]











Genes with expression patterns similar to MSX2

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. MSX2 ENSGALG00000038848 6950 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 msh homeobox 2 [Source:NCBI gene;Acc:395245]
2. ZIC3 ENSGALG00000031144 863 2.387 - 0.773 - - 0.871 0.743 - - - - Zic family member 3 [Source:HGNC Symbol;Acc:HGNC:12874]
3. PRRX1 ENSGALG00000003324 4859 2.301 - - 0.759 - - - - 0.783 0.759 - paired related homeobox 1 [Source:NCBI gene;Acc:373941]
4. TFAP2C ENSGALG00000007690 768 2.282 - - - - 0.744 0.712 - 0.826 - - transcription factor AP-2 gamma [Source:HGNC Symbol;Acc:HGNC:11744]
5. DLX5 ENSGALG00000009129 1395 1.772 - 0.924 - - - - - 0.848 - - distal-less homeobox 5 [Source:NCBI gene;Acc:373969]
6. VPS39 ENSGALG00000008991 4018 1.661 - - - - - - 0.957 - 0.704 - VPS39, HOPS complex subunit [Source:NCBI gene;Acc:423230]
7. ZFAND5 ENSGALG00000015144 9053 1.652 - - - - - - - 0.812 - 0.840 zinc finger AN1-type containing 5 [Source:NCBI gene;Acc:427254]
8. GHOX-7 GHOX-7 2555 1.651 - - - - - 0.801 - 0.850 - -
9. ISM1 ENSGALG00000009042 196 1.646 - - - - 0.861 0.785 - - - - isthmin 1 [Source:HGNC Symbol;Acc:HGNC:16213]
10. ENSGALG00000026584 ENSGALG00000026584 77 1.614 - - - - 0.791 0.823 - - - -
11. BMP7 ENSGALG00000007668 6645 1.609 - 0.867 - - 0.742 - - - - - bone morphogenetic protein 7 [Source:HGNC Symbol;Acc:HGNC:1074]
12. WNT6 ENSGALG00000011358 1886 1.604 - 0.825 - - - - - 0.779 - - Wnt family member 6 [Source:NCBI gene;Acc:395235]
13. DDRGK1 ENSGALG00000016003 9098 1.6 - - - - - - 0.827 - 0.773 - DDRGK domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16110]
14. CXCR4 ENSGALG00000012357 1320 1.507 - - - - - 0.712 - 0.795 - - C-X-C motif chemokine receptor 4 [Source:NCBI gene;Acc:395324]
15. NDNF ENSGALG00000011962 2261 1.468 - - 0.732 - - - - 0.736 - - neuron-derived neurotrophic factor, transcript variant X4
16. PRKCH ENSGALG00000011889 326 1.449 - 0.708 - - - - - 0.741 - - protein kinase C eta, transcript variant X1
17. TBX18 ENSGALG00000032789 1768 1.436 - - - - - - - 0.703 0.733 - T-box 18 [Source:NCBI gene;Acc:395104]
18. SMNDC1 ENSGALG00000008561 14415 0.997 - - - - - - 0.997 - - - survival motor neuron domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16900]
19. CEP112 ENSGALG00000034989 123 0.96 - - - - - - - - 0.960 - centrosomal protein 112 [Source:NCBI gene;Acc:101749632]
20. WNT7B ENSGALG00000036255 3343 0.958 - - - - - - 0.958 - - - Wnt family member 7B [Source:NCBI gene;Acc:427937]
21. ARHGEF28 ENSGALG00000014923 2523 0.957 - - - - - - 0.957 - - - Rho guanine nucleotide exchange factor 28 [Source:HGNC Symbol;Acc:HGNC:30322]
22. POLDIP3 ENSGALG00000011863 6424 0.957 - - - - - - 0.957 - - - DNA polymerase delta interacting protein 3 [Source:NCBI gene;Acc:417974]
23. TTLL5 ENSGALG00000010340 4875 0.957 - - - - - - 0.957 - - - tubulin tyrosine ligase like 5 [Source:NCBI gene;Acc:423367]
24. PSMD9 ENSGALG00000004352 7284 0.957 - - - - - - 0.957 - - - proteasome 26S subunit, non-ATPase 9 [Source:NCBI gene;Acc:416853]
25. ING3 ENSGALG00000009023 4961 0.957 - - - - - - 0.957 - - - inhibitor of growth family member 3 [Source:NCBI gene;Acc:417762]
26. PASK ENSGALG00000006016 3096 0.957 - - - - - - 0.957 - - - PAS domain containing serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:17270]
27. ENSGALG00000003150 ENSGALG00000003150 10001 0.957 - - - - - - 0.957 - - -
28. CCNY ENSGALG00000007076 3921 0.957 - - - - - - 0.957 - - - cyclin Y [Source:HGNC Symbol;Acc:HGNC:23354]
29. DGKD ENSGALG00000001730 4456 0.957 - - - - - - 0.957 - - - diacylglycerol kinase delta [Source:HGNC Symbol;Acc:HGNC:2851]
30. PTGR2 ENSGALG00000009269 4991 0.957 - - - - - - 0.957 - - - prostaglandin reductase 2 [Source:NCBI gene;Acc:423244]
31. NEDD4L ENSGALG00000034584 5881 0.956 - - - - - - 0.956 - - - neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase, transcript variant X6
32. SNX24 ENSGALG00000018874 4482 0.956 - - - - - - 0.956 - - - sorting nexin 24 [Source:NCBI gene;Acc:426798]
33. IL17RD ENSGALG00000005499 5844 0.956 - - - - - - 0.956 - - - interleukin 17 receptor D [Source:NCBI gene;Acc:395186]
34. RAB14 ENSGALG00000001474 12617 0.956 - - - - - - 0.956 - - - RAB14, member RAS oncogene family [Source:NCBI gene;Acc:417119]
35. RNF114 ENSGALG00000008021 6078 0.956 - - - - - - 0.956 - - - ring finger protein 114 [Source:NCBI gene;Acc:414881]
36. MMP2 ENSGALG00000003580 13120 0.955 - - - - - - 0.955 - - - matrix metallopeptidase 2 [Source:NCBI gene;Acc:386583]
37. ISCA1 ENSGALG00000012606 10342 0.955 - - - - - - 0.955 - - - iron-sulfur cluster assembly 1 [Source:NCBI gene;Acc:427463]
38. SULF1 ENSGALG00000039553 5115 0.954 - - - - - - 0.954 - - - sulfatase 1 [Source:HGNC Symbol;Acc:HGNC:20391]
39. GNA13 ENSGALG00000036028 9791 0.954 - - - - - - 0.954 - - - G protein subunit alpha 13 [Source:HGNC Symbol;Acc:HGNC:4381]
40. ERP29 ENSGALG00000023510 47100 0.953 - - - - - - 0.953 - - - endoplasmic reticulum protein 29 [Source:NCBI gene;Acc:416882]
41. NUP93 ENSGALG00000003010 16504 0.953 - - - - - - 0.953 - - - nucleoporin 93 [Source:NCBI gene;Acc:415693]
42. NT5DC2 ENSGALG00000035596 27633 0.952 - - - - - - 0.952 - - - 5'-nucleotidase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25717]
43. KIF4A ENSGALG00000004195 25487 0.952 - - - - - - 0.952 - - - kinesin family member 4A [Source:NCBI gene;Acc:395823]
44. WDFY3 10775 0.951 - - - - - - 0.951 - - - WD repeat and FYVE domain containing 3, transcript variant X7
45. PRRC1 ENSGALG00000014703 9962 0.95 - - - - - - 0.950 - - - proline rich coiled-coil 1 [Source:NCBI gene;Acc:427127]
46. PRKACB ENSGALG00000028530 12506 0.949 - - - - - - 0.949 - - - protein kinase cAMP-activated catalytic subunit beta, transcript variant X2
47. Sep-02_1 Sep-02_1 19203 0.947 - - - - - - 0.947 - - -
48. PHC3 ENSGALG00000009372 157 0.946 - - - - - - - - 0.946 - polyhomeotic homolog 3, transcript variant X8
49. TOM1L2 ENSGALG00000004902 89 0.943 - - - - - - - - 0.943 - target of myb1 like 2 membrane trafficking protein [Source:NCBI gene;Acc:416509]
50. MYL12A ENSGALG00000014854 63033 0.933 - - - - - - 0.933 - - - myosin, light chain 12A, regulatory, non-sarcomeric [Source:NCBI gene;Acc:396284]
51. CAMKK1 ENSGALG00000001617 64 0.931 - - - - - - - - 0.931 - calcium/calmodulin dependent protein kinase kinase 1 [Source:HGNC Symbol;Acc:HGNC:1469]
52. CEP250 ENSGALG00000026151 163 0.93 - - - - - - - - 0.930 - centrosomal protein 250 [Source:HGNC Symbol;Acc:HGNC:1859]
53. ENSGALG00000022570 ENSGALG00000022570 90374 0.928 - - - - - - 0.928 - - -
54. MARCKSL1 ENSGALG00000032335 88728 0.921 - - - - - - 0.921 - - - MARCKS like 1 [Source:NCBI gene;Acc:770764]
55. SERINC2 ENSGALG00000021685 1581 0.917 - - - - - - - - 0.917 - serine incorporator 2 [Source:NCBI gene;Acc:419558]
56. ZEB2 ENSGALG00000040465 315 0.916 - - - - - - - - 0.916 - Gallus gallus zinc finger E-box binding homeobox 2 (ZEB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001318466]
57. NRSN1 ENSGALG00000037811 11424 0.913 - - 0.913 - - - - - - - neurensin 1 [Source:HGNC Symbol;Acc:HGNC:17881]
58. IQCA1 ENSGALG00000003980 87 0.913 - - - - - - - - 0.913 - IQ motif containing with AAA domain 1 [Source:HGNC Symbol;Acc:HGNC:26195]
59. SNRPD1 ENSGALG00000041334 219195 0.912 - - - - - - 0.912 - - - small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
60. YBX3 ENSGALG00000031890 819 0.909 - - - - - - - - 0.909 - Y-box binding protein 3 [Source:NCBI gene;Acc:396371]
61. CREB5 ENSGALG00000038265 92 0.9 - - - - - - - - 0.900 - cAMP responsive element binding protein 5 [Source:HGNC Symbol;Acc:HGNC:16844]
62. UCHL5 ENSGALG00000002524 28460 0.898 - - - - - - 0.898 - - - ubiquitin C-terminal hydrolase L5 [Source:NCBI gene;Acc:424359]
63. ENSGALG00000025912 ENSGALG00000025912 4 0.895 - - - - - 0.895 - - - -
64. ITGAV ENSGALG00000002655 26 0.895 - - - - - 0.895 - - - - integrin subunit alpha V [Source:NCBI gene;Acc:396420]
65. BAP1 ENSGALG00000004366 12 0.895 - - - - - 0.895 - - - - BRCA1 associated protein 1 [Source:NCBI gene;Acc:415944]
66. SLC38A7 ENSGALG00000002313 25 0.895 - - - - - 0.895 - - - - solute carrier family 38 member 7, transcript variant X5
67. TMEM181 ENSGALG00000013737 19 0.895 - - - - - 0.895 - - - - transmembrane protein 181 [Source:HGNC Symbol;Acc:HGNC:20958]
68. DPF3 ENSGALG00000009352 7 0.895 - - - - - 0.895 - - - - double PHD fingers 3 [Source:NCBI gene;Acc:395351]
69. ANKFN1 ENSGALG00000003105 15 0.895 - - - - - 0.895 - - - - ankyrin repeat and fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26766]
70. RAB4A ENSGALG00000036218 20 0.895 - - - - - 0.895 - - - - RAB4A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9781]
71. ACPP ENSGALG00000043415 4 0.895 - - - - - 0.895 - - - - acid phosphatase, prostate, transcript variant X2
72. CREB3 ENSGALG00000002523 23 0.895 - - - - - 0.895 - - - - cAMP responsive element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2347]
73. VTG1 ENSGALG00000039354 17 0.895 - - - - - 0.895 - - - - vitellogenin 1 [Source:NCBI gene;Acc:424547]
74. SLTM ENSGALG00000004192 3244 0.895 - - - - - - - - 0.895 - SAFB like transcription modulator [Source:HGNC Symbol;Acc:HGNC:20709]
75. SMIM10 SMIM10 2 0.895 - - - - - 0.895 - - - -
76. ENSGALG00000024369 ENSGALG00000024369 4 0.895 - - - - - 0.895 - - - -
77. SHANK2 ENSGALG00000035916 9 0.895 - - - - - 0.895 - - - - SH3 and multiple ankyrin repeat domains 2, transcript variant X10
78. SRPX2 ENSGALG00000006796 32 0.895 - - - - - 0.895 - - - - sushi repeat containing protein X-linked 2 [Source:HGNC Symbol;Acc:HGNC:30668]
79. BCMO1 BCMO1 35 0.895 - - - - - 0.895 - - - -
80. ABI3BP ENSGALG00000015307 4 0.895 - - - - - 0.895 - - - - ABI family member 3 binding protein [Source:HGNC Symbol;Acc:HGNC:17265]
81. TRAF1 ENSGALG00000001583 3 0.895 - - - - - 0.895 - - - - TNF receptor associated factor 1 [Source:HGNC Symbol;Acc:HGNC:12031]
82. PEX26 ENSGALG00000019286 1 0.895 - - - - - 0.895 - - - - peroxisomal biogenesis factor 26 [Source:HGNC Symbol;Acc:HGNC:22965]
83. TMEM201 ENSGALG00000002527 2 0.895 - - - - - 0.895 - - - - transmembrane protein 201
84. WNT3 ENSGALG00000001079 8 0.895 - - - - - 0.895 - - - - Wnt family member 3 [Source:NCBI gene;Acc:374142]
85. VWA3B ENSGALG00000040709 5 0.895 - - - - - 0.895 - - - - von Willebrand factor A domain containing 3B [Source:HGNC Symbol;Acc:HGNC:28385]
86. ENSGALG00000020320 ENSGALG00000020320 1 0.895 - - - - - 0.895 - - - -
87. INHBB ENSGALG00000028770 2 0.895 - - - - - 0.895 - - - - inhibin subunit beta B [Source:NCBI gene;Acc:396126]
88. ENSGALG00000006495 ENSGALG00000006495 4 0.895 - - - - - 0.895 - - - -
89. OLIG3 ENSGALG00000013862 51 0.895 - - - - - 0.895 - - - - oligodendrocyte transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:18003]
90. CLDN19 ENSGALG00000023580 1 0.895 - - - - - 0.895 - - - - claudin 19 [Source:HGNC Symbol;Acc:HGNC:2040]
91. KCNQ3 ENSGALG00000037626 6 0.895 - - - - - 0.895 - - - - potassium voltage-gated channel subfamily Q member 3 [Source:HGNC Symbol;Acc:HGNC:6297]
92. Sep-03 Sep-03 109 0.893 - - - - - 0.893 - - - -
93. LHCGR ENSGALG00000009095 174 0.893 - - - - - - - - 0.893 - luteinizing hormone/choriogonadotropin receptor [Source:NCBI gene;Acc:395776]
94. BAMBI ENSGALG00000040993 7562 0.892 - - 0.892 - - - - - - - BMP and activin membrane bound inhibitor [Source:NCBI gene;Acc:428413]
95. MMP17 3885 0.892 - 0.892 - - - - - - - - matrix metallopeptidase 17
96. IGF1R ENSGALG00000040651 772 0.891 - - - - - - - - 0.891 - insulin like growth factor 1 receptor [Source:NCBI gene;Acc:395889]
97. GGMOXR1 GGMOXR1 6734 0.89 - 0.890 - - - - - - - -
98. ELMO1 ENSGALG00000035492 1089 0.889 - - - - - - - - 0.889 - engulfment and cell motility 1 [Source:NCBI gene;Acc:420735]
99. PRDM15 ENSGALG00000019178 2729 0.887 - - - - - - - - 0.887 - PR/SET domain 15 [Source:HGNC Symbol;Acc:HGNC:13999]
100. PGS1 ENSGALG00000007181 3187 0.887 - - - - - - - - 0.887 - phosphatidylglycerophosphate synthase 1 [Source:NCBI gene;Acc:422087]

There are 382 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA