Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for MSH6

Gene Name Gene ID Reads Annotation
MSH6 ENSGALG00000008957 6396 mutS homolog 6 [Source:HGNC Symbol;Acc:HGNC:7329]











Genes with expression patterns similar to MSH6

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. MSH6 ENSGALG00000008957 6396 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 mutS homolog 6 [Source:HGNC Symbol;Acc:HGNC:7329]
2. SSR2 ENSGALG00000000764 32190 2.466 - - - 0.727 - - 0.999 0.740 - - signal sequence receptor subunit 2 [Source:NCBI gene;Acc:425656]
3. ERLIN2 ENSGALG00000003092 18251 1.829 - - - - - - 0.980 0.849 - - ER lipid raft associated 2 [Source:HGNC Symbol;Acc:HGNC:1356]
4. NANS ENSGALG00000015320 10552 1.8 - - - - - - 0.995 0.805 - - N-acetylneuraminate synthase [Source:NCBI gene;Acc:427283]
5. FAM174A ENSGALG00000026203 8369 1.785 - - - - - - 0.997 0.788 - - family with sequence similarity 174 member A [Source:HGNC Symbol;Acc:HGNC:24943]
6. NDUFS5 ENSGALG00000003625 27698 1.782 - - - - - - 0.999 0.783 - - NADH:ubiquinone oxidoreductase subunit S5 [Source:HGNC Symbol;Acc:HGNC:7712]
7. SLC12A4 ENSGALG00000034179 5674 1.781 - - - - - - 0.999 0.782 - - solute carrier family 12 member 4 [Source:HGNC Symbol;Acc:HGNC:10913]
8. NUP133 ENSGALG00000011091 3804 1.733 - - - - - - 0.999 0.734 - - nucleoporin 133 [Source:HGNC Symbol;Acc:HGNC:18016]
9. PRIM2 ENSGALG00000016278 5160 1.723 - - - - - - 0.998 0.725 - - DNA primase subunit 2 [Source:NCBI gene;Acc:421878]
10. PSMD14 ENSGALG00000011128 13335 1.701 - - - 0.703 - - 0.998 - - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
11. HEATR3 ENSGALG00000041613 2704 1.576 - - - 0.769 - - - 0.807 - - HEAT repeat containing 3 [Source:NCBI gene;Acc:415734]
12. HINT3 ENSGALG00000044342 5674 1.57 - - - 0.811 - - - 0.759 - - histidine triad nucleotide binding protein 3 [Source:HGNC Symbol;Acc:HGNC:18468]
13. CHM ENSGALG00000006906 4953 1.569 - - - 0.720 - - - 0.849 - - CHM, Rab escort protein 1 [Source:NCBI gene;Acc:422266]
14. KIAA1143 ENSGALG00000035952 6735 1.559 - - - 0.782 - - - 0.777 - - KIAA1143 [Source:NCBI gene;Acc:420709]
15. DPY30 ENSGALG00000010621 6818 1.553 - - - 0.814 - - - 0.739 - - dpy-30, histone methyltransferase complex regulatory subunit [Source:NCBI gene;Acc:421482]
16. RMND5A ENSGALG00000015815 2903 1.551 - - - 0.762 - - - 0.789 - - required for meiotic nuclear division 5 homolog A [Source:NCBI gene;Acc:422920]
17. PANK1 ENSGALG00000006431 2910 1.544 - - - 0.786 - - - 0.758 - - pantothenate kinase 1 [Source:HGNC Symbol;Acc:HGNC:8598]
18. UTP18 ENSGALG00000002985 7129 1.537 - - - 0.805 - - - 0.732 - - UTP18, small subunit processome component [Source:HGNC Symbol;Acc:HGNC:24274]
19. ATR ENSGALG00000002663 4626 1.536 - - - 0.762 - - - 0.774 - - ATR serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:882]
20. LYAR ENSGALG00000015000 10756 1.531 - - - 0.816 - - - 0.715 - - Ly1 antibody reactive [Source:HGNC Symbol;Acc:HGNC:26021]
21. CDC42BPB ENSGALG00000011432 8220 1.526 - - - 0.705 - - - 0.821 - - CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
22. ATG16L1 ENSGALG00000001619 3562 1.506 - - - 0.730 - - - 0.776 - - autophagy related 16 like 1 [Source:HGNC Symbol;Acc:HGNC:21498]
23. SNX27 ENSGALG00000040687 3221 1.493 - - - 0.758 - - - 0.735 - - sorting nexin family member 27 [Source:NCBI gene;Acc:425666]
24. NUP205 ENSGALG00000011662 4157 1.486 - - - 0.748 - - - 0.738 - - nucleoporin 205
25. LARS ENSGALG00000007494 13966 1.479 - - - 0.750 - - - 0.729 - - leucyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:6512]
26. SRSF11 ENSGALG00000011305 10435 1.477 - - - 0.738 - - - 0.739 - - serine and arginine rich splicing factor 11 [Source:NCBI gene;Acc:424714]
27. CACYBP ENSGALG00000004554 7320 1.471 - - - 0.747 - - - 0.724 - - calcyclin binding protein [Source:HGNC Symbol;Acc:HGNC:30423]
28. TAF9 4097 1.457 - - - 0.713 - - - 0.744 - - TATA-box binding protein associated factor 9
29. WIPI2 ENSGALG00000004557 4961 1.456 - - - 0.742 - - - 0.714 - - WD repeat domain, phosphoinositide interacting 2 [Source:NCBI gene;Acc:416481]
30. METTL21A ENSGALG00000008493 3188 1.447 - - - 0.742 - - - 0.705 - - methyltransferase like 21A [Source:NCBI gene;Acc:424094]
31. ZCCHC6 ENSGALG00000012607 3655 1.447 - - - 0.736 - - - 0.711 - - zinc finger CCHC-type containing 6 [Source:NCBI gene;Acc:100857368]
32. RTN4IP1 ENSGALG00000015343 4366 1.446 - - - 0.709 - - - 0.737 - - reticulon 4 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:18647]
33. ARPP19 ENSGALG00000017370 1720 1.434 - - - 0.717 - - - 0.717 - - cAMP regulated phosphoprotein 19 [Source:NCBI gene;Acc:768853]
34. MIPEP ENSGALG00000017118 8666 1 - - - - - - 1.000 - - - mitochondrial intermediate peptidase [Source:HGNC Symbol;Acc:HGNC:7104]
35. AMFR ENSGALG00000003107 6560 1 - - - - - - 1.000 - - - autocrine motility factor receptor [Source:HGNC Symbol;Acc:HGNC:463]
36. EMC1 ENSGALG00000003969 6876 1 - - - - - - 1.000 - - - ER membrane protein complex subunit 1 [Source:NCBI gene;Acc:419470]
37. AP1G1 12403 0.999 - - - - - - 0.999 - - - adaptor related protein complex 1 gamma 1 subunit, transcript variant X2
38. NUP153 ENSGALG00000012720 8079 0.999 - - - - - - 0.999 - - - nucleoporin 153 [Source:HGNC Symbol;Acc:HGNC:8062]
39. SPAG1 ENSGALG00000033254 1370 0.999 - - - - - - 0.999 - - - sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
40. ZNF384 ENSGALG00000032599 2369 0.999 - - - - - - 0.999 - - - zinc finger protein 384 [Source:NCBI gene;Acc:770350]
41. MAMDC2 ENSGALG00000015115 1512 0.999 - - - - - - 0.999 - - - MAM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23673]
42. ZNF367 ENSGALG00000012629 3215 0.999 - - - - - - 0.999 - - - zinc finger protein 367 [Source:HGNC Symbol;Acc:HGNC:18320]
43. SP4 ENSGALG00000039454 5597 0.999 - - - - - - 0.999 - - - Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
44. IFT57 ENSGALG00000015356 5540 0.999 - - - - - - 0.999 - - - intraflagellar transport 57 [Source:HGNC Symbol;Acc:HGNC:17367]
45. NUP188 ENSGALG00000043394 9288 0.999 - - - - - - 0.999 - - - nucleoporin 188 [Source:NCBI gene;Acc:417198]
46. ANAPC2 ENSGALG00000008625 8822 0.999 - - - - - - 0.999 - - - anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:19989]
47. RWDD3 ENSGALG00000038421 10909 0.999 - - - - - - 0.999 - - - RWD domain containing 3 [Source:NCBI gene;Acc:424481]
48. RNF126 ENSGALG00000042948 4724 0.999 - - - - - - 0.999 - - - ring finger protein 126 [Source:NCBI gene;Acc:420085]
49. KDM4B ENSGALG00000034592 6711 0.999 - - - - - - 0.999 - - - lysine demethylase 4B, transcript variant X8
50. FBXL21 ENSGALG00000006327 2910 0.999 - - - - - - 0.999 - - - F-box and leucine rich repeat protein 21 [Source:NCBI gene;Acc:416306]
51. HIBCH ENSGALG00000043307 11990 0.999 - - - - - - 0.999 - - - 3-hydroxyisobutyryl-CoA hydrolase [Source:NCBI gene;Acc:423979]
52. SMARCD2 ENSGALG00000029304 11867 0.998 - - - - - - 0.998 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:HGNC Symbol;Acc:HGNC:11107]
53. CDH3 5050 0.998 - - - - - - 0.998 - - - cadherin 3
54. MEX3A ENSGALG00000014016 3692 0.998 - - - - - - 0.998 - - - mex-3 RNA binding family member A [Source:HGNC Symbol;Acc:HGNC:33482]
55. OAZ2 ENSGALG00000036288 13213 0.998 - - - - - - 0.998 - - - Gallus gallus ornithine decarboxylase antizyme 2 (OAZ2), mRNA. [Source:RefSeq mRNA;Acc:NM_001142862]
56. USP9X ENSGALG00000016236 9419 0.998 - - - - - - 0.998 - - - ubiquitin specific peptidase 9, X-linked, transcript variant X3
57. RBPMS_1 ENSGALG00000010291 16146 0.998 - - - - - - 0.998 - - - RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097]
58. BTBD1 ENSGALG00000006020 14157 0.997 - - - - - - 0.997 - - - BTB domain containing 1 [Source:NCBI gene;Acc:415461]
59. SPC25 ENSGALG00000010900 14238 0.997 - - - - - - 0.997 - - - SPC25, NDC80 kinetochore complex component [Source:NCBI gene;Acc:424172]
60. HOXB2 ENSGALG00000025774 5280 0.997 - - - - - - 0.997 - - - homeobox B2 [Source:HGNC Symbol;Acc:HGNC:5113]
61. NTPCR ENSGALG00000011015 8652 0.997 - - - - - - 0.997 - - - nucleoside-triphosphatase, cancer-related [Source:NCBI gene;Acc:428588]
62. ACVR1 ENSGALG00000037301 6448 0.996 - - - - - - 0.996 - - - activin A receptor type 1 [Source:NCBI gene;Acc:395246]
63. MRPL21 ENSGALG00000004362 20796 0.996 - - - - - - 0.996 - - - mitochondrial ribosomal protein L21 [Source:NCBI gene;Acc:423000]
64. TCF21 ENSGALG00000029024 8252 0.996 - - - - - - 0.996 - - - transcription factor 21 [Source:NCBI gene;Acc:421697]
65. HOXA4 ENSGALG00000022622 22327 0.991 - - - - - - 0.991 - - - homeobox A4 [Source:NCBI gene;Acc:395307]
66. NDUFB5 ENSGALG00000009076 32963 0.987 - - - - - - 0.987 - - - NADH:ubiquinone oxidoreductase subunit B5 [Source:NCBI gene;Acc:424978]
67. ZC3H15 ENSGALG00000041857 19808 0.985 - - - - - - 0.985 - - - zinc finger CCCH-type containing 15 [Source:NCBI gene;Acc:423992]
68. THG1L ENSGALG00000003722 7497 0.983 - - - - - - 0.983 - - - tRNA-histidine guanylyltransferase 1 like [Source:NCBI gene;Acc:416242]
69. EIF3A ENSGALG00000009328 39982 0.978 - - - - - - 0.978 - - - eukaryotic translation initiation factor 3 subunit A [Source:HGNC Symbol;Acc:HGNC:3271]
70. AKAP12 ENSGALG00000036240 64617 0.975 - - - - - - 0.975 - - - A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
71. PPP2CA ENSGALG00000006462 26306 0.97 - - - - - - 0.970 - - - protein phosphatase 2 catalytic subunit alpha [Source:NCBI gene;Acc:416318]
72. COX6A1 ENSGALG00000007205 72629 0.954 - - - - - - 0.954 - - - cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
73. DAD1 ENSGALG00000035626 32604 0.891 - - - - - - - 0.891 - - defender against cell death 1 [Source:NCBI gene;Acc:395343]
74. TUBB2B ENSGALG00000012821 41535 0.89 - - - - - - 0.890 - - - tubulin beta 2B class IIb [Source:NCBI gene;Acc:420883]
75. FAM18B1 ENSGALG00000001335 5177 0.889 - - - - - - - 0.889 - - family with sequence similarity 18, member B1 [Source:NCBI gene;Acc:417324]
76. GCSH ENSGALG00000032679 29231 0.877 - - - - - - - 0.877 - - glycine cleavage system protein H [Source:NCBI gene;Acc:415803]
77. STRN3 ENSGALG00000040464 9045 0.876 - - - - - - - 0.876 - - striatin 3 [Source:HGNC Symbol;Acc:HGNC:15720]
78. KCNK5 ENSGALG00000034077 3233 0.872 - - - 0.872 - - - - - - potassium two pore domain channel subfamily K member 5 [Source:HGNC Symbol;Acc:HGNC:6280]
79. NUDT7 ENSGALG00000034395 7396 0.87 - - - - - - - 0.870 - - nudix hydrolase 7 [Source:NCBI gene;Acc:415800]
80. NDUFA12 ENSGALG00000011325 19807 0.869 - - - - - - - 0.869 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:NCBI gene;Acc:417907]
81. PLK1 ENSGALG00000006110 12892 0.866 - - - - - - - 0.866 - - polo like kinase 1 [Source:NCBI gene;Acc:416575]
82. PTPMT1 ENSGALG00000008091 6160 0.862 - - - - - - - 0.862 - - protein tyrosine phosphatase, mitochondrial 1 [Source:NCBI gene;Acc:423181]
83. RFC1 ENSGALG00000014298 6516 0.862 - - - - - - - 0.862 - - replication factor C subunit 1 [Source:NCBI gene;Acc:422788]
84. BLMH ENSGALG00000004259 36907 0.861 - - - - - - - 0.861 - - bleomycin hydrolase [Source:NCBI gene;Acc:395996]
85. MRPS22 ENSGALG00000005367 8307 0.86 - - - - - - - 0.860 - - mitochondrial ribosomal protein S22 [Source:HGNC Symbol;Acc:HGNC:14508]
86. CSRP2BP CSRP2BP 4679 0.859 - - - - - - - 0.859 - -
87. PCTP ENSGALG00000003099 5851 0.858 - - - - - - - 0.858 - - phosphatidylcholine transfer protein [Source:HGNC Symbol;Acc:HGNC:8752]
88. ENSGALG00000001861 ENSGALG00000001861 10150 0.857 - - - - - - - 0.857 - -
89. ZNF207 ENSGALG00000003454 47086 0.857 - - - - - - 0.857 - - - zinc finger protein 207 [Source:HGNC Symbol;Acc:HGNC:12998]
90. CASP6 ENSGALG00000012186 6639 0.854 - - - - - - - 0.854 - - caspase 6 [Source:NCBI gene;Acc:395477]
91. HOXA5 ENSGALG00000025929 6231 0.853 - - - - - - - 0.853 - - homeobox A5 [Source:NCBI gene;Acc:100858404]
92. PSMB3 ENSGALG00000001597 22588 0.853 - - - - - - - 0.853 - - proteasome subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:9540]
93. PEX10 ENSGALG00000001223 5704 0.852 - - - - - - - 0.852 - - peroxisomal biogenesis factor 10 [Source:NCBI gene;Acc:419396]
94. BPNT1 ENSGALG00000009576 7445 0.851 - - - - - - - 0.851 - - 3'(2'), 5'-bisphosphate nucleotidase 1 [Source:NCBI gene;Acc:421347]
95. PSMD13 ENSGALG00000043684 14720 0.85 - - - - - - - 0.850 - - proteasome 26S subunit, non-ATPase 13 [Source:HGNC Symbol;Acc:HGNC:9558]
96. SSR1 ENSGALG00000012798 62626 0.85 - - - - - - - 0.850 - - signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
97. UTP15 ENSGALG00000013510 13122 0.847 - - - - - - - 0.847 - - UTP15, small subunit processome component [Source:NCBI gene;Acc:426152]
98. CWC27 ENSGALG00000014747 8389 0.844 - - - - - - - 0.844 - - CWC27 spliceosome associated protein homolog [Source:HGNC Symbol;Acc:HGNC:10664]
99. TRAF3IP1 ENSGALG00000004236 7094 0.844 - - - - - - - 0.844 - - TRAF3 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:17861]
100. TDP2 ENSGALG00000013637 6595 0.843 - - - - - - - 0.843 - - tyrosyl-DNA phosphodiesterase 2 [Source:NCBI gene;Acc:421007]

There are 608 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA