Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for MSH4

Gene Name Gene ID Reads Annotation
MSH4 ENSDARG00000075826 37 mutS homolog 4 [Source:ZFIN;Acc:ZDB-GENE-131121-643]










Genes with expression patterns similar to MSH4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. MSH4 ENSDARG00000075826 37 8 1.000 1.000 1.000 - 1.000 1.000 1.000 1.000 1.000 mutS homolog 4 [Source:ZFIN;Acc:ZDB-GENE-131121-643]
2. cep68 ENSDARG00000039411 30 2.833 1.000 - 0.833 - - - 1.000 - - centrosomal protein 68 [Source:ZFIN;Acc:ZDB-GENE-030616-565]
3. GPR137B_1 GPR137B_1 8 2.738 1.000 - - - - 0.962 - - 0.776
4. bckdhb ENSDARG00000014676 17 2.729 - 0.729 - - - 1.000 1.000 - - branched chain keto acid dehydrogenase E1, beta polypeptide [Source:ZFIN;Acc:ZDB-GENE-030124-2]
5. C1S_1 C1S_1 11 2.721 1.000 - - - - 0.721 1.000 - -
6. si:dkey-220k22.3 ENSDARG00000094693 166 2.467 0.722 1.000 - - - - 0.745 - - si:dkey-220k22.3 [Source:ZFIN;Acc:ZDB-GENE-060526-257]
7. si:ch211-235f1.3 ENSDARG00000095179 27 2.44 - 0.712 - - - - 1.000 - 0.728 si:ch211-235f1.3 [Source:ZFIN;Acc:ZDB-GENE-091204-440]
8. CABZ01072557.1 CABZ01072557.1 9 2.438 1.000 0.729 - - - 0.709 - - -
9. slc17a8 ENSDARG00000057728, ENSDARG00000109791 8 2 - 1.000 - - - 1.000 - - - solute carrier family 17 (vesicular glutamate transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-416]
10. matn3a ENSDARG00000069245 2410 2 1.000 1.000 - - - - - - - matrilin 3a [Source:ZFIN;Acc:ZDB-GENE-040822-21]
11. bbs10 ENSDARG00000069515, ENSDARG00000110925 36 2 - 1.000 - - - - 1.000 - - Bardet-Biedl syndrome 10 [Source:ZFIN;Acc:ZDB-GENE-060503-355]
12. pnp6 ENSDARG00000040942, ENSDARG00000114753 10 2 - - - - - 1.000 1.000 - - purine nucleoside phosphorylase 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1800]
13. ccdc129 37 2 1.000 1.000 - - - - - - - coiled-coil domain containing 129, transcript variant X2
14. mthfsd ENSDARG00000062042 34 2 - - - - - 1.000 1.000 - - methenyltetrahydrofolate synthetase domain containing [Source:ZFIN;Acc:ZDB-GENE-030131-3513]
15. ptger4a ENSDARG00000059236 13 2 - 1.000 - - - - 1.000 - - prostaglandin E receptor 4 (subtype EP4) a [Source:ZFIN;Acc:ZDB-GENE-060222-1]
16. CDHR5 CDHR5 2 2 1.000 - - - - - 1.000 - -
17. mab21l3 ENSDARG00000076013, ENSDARG00000112160 35 2 1.000 1.000 - - - - - - - mab-21-like 3 [Source:ZFIN;Acc:ZDB-GENE-070912-242]
18. fabp10a ENSDARG00000038439 4 2 1.000 - - - - - 1.000 - - fatty acid binding protein 10a, liver basic [Source:ZFIN;Acc:ZDB-GENE-020318-1]
19. pde6b ENSDARG00000011671 44 2 - - - - - 1.000 1.000 - - phosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421-2]
20. GPR82 GPR82 127 2 - 1.000 - - - 1.000 - - -
21. RNF122 RNF122 29 2 1.000 - - - - - 1.000 - -
22. si:ch211-202n12.5 si:ch211-202n12.5 19 2 1.000 - - - - - 1.000 - -
23. inpp5d ENSDARG00000074283, ENSDARG00000116834 12 2 - 1.000 - - - - 1.000 - - inositol polyphosphate-5-phosphatase D [Source:ZFIN;Acc:ZDB-GENE-100922-30]
24. DLK1 60 2 - 1.000 - - - - 1.000 - - delta like non-canonical Notch ligand 1
25. si:ch211-195i24.1 si:ch211-195i24.1 10 2 1.000 1.000 - - - - - - -
26. echdc1 68 2 1.000 1.000 - - - - - - - enoyl CoA hydratase domain containing 1, transcript variant 1
27. rictora ENSDARG00000100867 20 2 1.000 - - - - - 1.000 - - RPTOR independent companion of MTOR, complex 2 a [Source:ZFIN;Acc:ZDB-GENE-060526-49]
28. CU633479.6 ENSDARG00000116146 4 2 1.000 - - - - - 1.000 - -
29. si:dkey-167k11.3 si:dkey-167k11.3 3 2 1.000 - - - - - 1.000 - -
30. CABZ01088365.1 CABZ01088365.1 66 1.997 - 1.000 - - - - - 0.997 -
31. calml4a ENSDARG00000075800 14 1.94 - - - - - 1.000 0.940 - - calmodulin-like 4a [Source:ZFIN;Acc:ZDB-GENE-081022-9]
32. ATXN1 ATXN1 12 1.91 0.910 1.000 - - - - - - -
33. ccdc85a ENSDARG00000039497 24 1.906 - 0.906 - - - - 1.000 - - coiled-coil domain containing 85A [Source:ZFIN;Acc:ZDB-GENE-080220-55]
34. cyb561 ENSDARG00000038176 55 1.876 - - - - - 1.000 0.876 - - cytochrome b561 [Source:ZFIN;Acc:ZDB-GENE-070713-3]
35. VWDE ENSDARG00000103443 10 1.868 - - - - - 0.868 1.000 - - von Willebrand factor D and EGF domains [Source:ZFIN;Acc:ZDB-GENE-060929-1226]
36. ubtd1b ENSDARG00000079623 26 1.847 0.847 - - - - - 1.000 - - ubiquitin domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-050913-62]
37. znhit3 ENSDARG00000023950 61 1.837 1.000 - - - - 0.837 - - - zinc finger, HIT-type containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1114]
38. zgc:193690 34 1.818 - 1.000 - - - - 0.818 - - zgc:193690
39. fermt3b ENSDARG00000030938 17 1.805 - 0.805 - - - 1.000 - - - fermitin family member 3b [Source:ZFIN;Acc:ZDB-GENE-040426-1366]
40. CU633991.1 CU633991.1 16 1.796 0.796 - - - - - 1.000 - -
41. si:dkeyp-51f12.2 ENSDARG00000095606 24 1.789 - - 0.789 - - - 1.000 - - si:dkeyp-51f12.2 [Source:ZFIN;Acc:ZDB-GENE-070705-546]
42. cacna1c ENSDARG00000008398 193 1.774 - 1.000 - - - - - 0.774 - calcium channel, voltage-dependent, L type, alpha 1C subunit [Source:ZFIN;Acc:ZDB-GENE-020129-1]
43. nkx2.5 ENSDARG00000018004, ENSDARG00000116714 23 1.772 - 1.000 - - 0.772 - - - - NK2 homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-321]
44. mb21d1 ENSDARG00000021572 12 1.767 - - 0.767 - - - 1.000 - - Mab-21 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090313-23]
45. si:dkey-157g20.2 si:dkey-157g20.2 29 1.754 - - - - - 0.754 1.000 - -
46. RBM44 RBM44 25 1.753 - - - - - 1.000 - - 0.753
47. dhcr24 ENSDARG00000013236 61 1.751 0.751 1.000 - - - - - - - 24-dehydrocholesterol reductase [Source:ZFIN;Acc:ZDB-GENE-041212-73]
48. cabp2a ENSDARG00000052016 19 1.751 0.751 1.000 - - - - - - - calcium binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-050913-25]
49. cpb1 ENSDARG00000045442, ENSDARG00000110762 22 1.751 0.751 1.000 - - - - - - - carboxypeptidase B1 (tissue) [Source:ZFIN;Acc:ZDB-GENE-030131-1132]
50. SIRT4 ENSDARG00000010415 118 1.75 0.750 - - - - - 1.000 - - sirtuin 4 [Source:ZFIN;Acc:ZDB-GENE-041010-65]
51. valopa ENSDARG00000021150 71 1.747 - 0.747 - - - - 1.000 - - vertebrate ancient long opsin a [Source:ZFIN;Acc:ZDB-GENE-000427-4]
52. ak7b ENSDARG00000017023 25 1.747 - 0.747 - - - - 1.000 - - adenylate kinase 7b [Source:ZFIN;Acc:ZDB-GENE-050309-170]
53. SLC7A8 SLC7A8 25 1.745 - - - - - - 1.000 - 0.745
54. si:ch211-150j10.4 ENSDARG00000079336 23 1.745 1.000 - - - - - 0.745 - - si:ch211-150j10.4 [Source:ZFIN;Acc:ZDB-GENE-110411-215]
55. Telomerase-vert Telomerase-vert 8 1.733 - - - - 0.733 - 1.000 - -
56. taar20t ENSDARG00000095035 1 1.733 - - - - 0.733 - 1.000 - - trace amine associated receptor 20t [Source:ZFIN;Acc:ZDB-GENE-060414-18]
57. nudt4b ENSDARG00000045878 10 1.733 - - - - 0.733 - 1.000 - - nudix (nucleoside diphosphate linked moiety X)-type motif 4b [Source:ZFIN;Acc:ZDB-GENE-040912-79]
58. MFRP MFRP 6 1.733 - - - - 0.733 1.000 - - -
59. olfcg5 ENSDARG00000102459 5 1.733 - - - - 0.733 - - - 1.000 olfactory receptor C family, g5 [Source:ZFIN;Acc:ZDB-GENE-060503-913]
60. UNC119 UNC119 104 1.733 - - - - 0.733 - 1.000 - -
61. cdc25d ENSDARG00000075599 7 1.729 - 0.729 - - - - 1.000 - - cell division cycle 25 homolog d [Source:ZFIN;Acc:ZDB-GENE-090313-74]
62. ppfia2 ENSDARG00000013000 45 1.729 - 0.729 - - - - 1.000 - - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7905]
63. grn1 ENSDARG00000089362 20 1.729 - 0.729 - - - - 1.000 - - granulin 1 [Source:ZFIN;Acc:ZDB-GENE-060103-1]
64. pigm ENSDARG00000024277 86 1.729 0.732 - - - - - - 0.997 - phosphatidylinositol glycan anchor biosynthesis, class M [Source:ZFIN;Acc:ZDB-GENE-040426-1393]
65. ZNF76 ENSDARG00000013279 260 1.723 - - - - - 0.731 - 0.992 - zinc finger protein 76 [Source:ZFIN;Acc:ZDB-GENE-061027-379]
66. p4ha1a_1 ENSDARG00000033537, ENSDARG00000114754 36 1.722 - 0.955 - - - - - - 0.767 prolyl 4-hydroxylase, alpha polypeptide I a [Source:ZFIN;Acc:ZDB-GENE-040724-91]
67. mif4gdb ENSDARG00000102578 31 1.721 - 0.721 - - - 1.000 - - - MIF4G domain containing b [Source:ZFIN;Acc:ZDB-GENE-050227-7]
68. slmapb ENSDARG00000020764, ENSDARG00000117032 112 1.72 - 0.840 - - - 0.880 - - - sarcolemma associated protein b [Source:ZFIN;Acc:ZDB-GENE-040426-809]
69. wu:fe38f03 wu:fe38f03 22 1.715 - 0.715 - - - 1.000 - - -
70. PIK3R6 PIK3R6 149 1.709 - - - - - - 0.716 0.993 -
71. pvalb5 ENSDARG00000032836 242 1.709 1.000 - - - - 0.709 - - - parvalbumin 5 [Source:ZFIN;Acc:ZDB-GENE-050417-336]
72. CU633740.1 CU633740.1 8 1.686 - 0.953 - - 0.733 - - - -
73. slc5a8l ENSDARG00000003697, ENSDARG00000110685 69 1.659 - 0.805 - - - - 0.854 - - solute carrier family 5 (iodide transporter), member 8-like [Source:ZFIN;Acc:ZDB-GENE-061110-98]
74. pde6a ENSDARG00000000380 40 1.653 - 0.917 - - - - 0.736 - - phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
75. fhit_1 ENSDARG00000078195 91 1.644 0.919 - - - - 0.725 - - - fragile histidine triad gene [Source:ZFIN;Acc:ZDB-GENE-040426-1703]
76. ddr2b ENSDARG00000058695 7 1.601 - - - - 0.733 0.868 - - - discoidin domain receptor tyrosine kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060503-361]
77. myct1 myct1 217 1.559 - - - - - 0.703 0.856 - -
78. DNAH10 ENSDARG00000061486 29 1.54 0.796 - - - - - - - 0.744 dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
79. CABZ01054965.1 ENSDARG00000090844 74 1.527 - 0.767 - - - - 0.760 - - interleukin-1 receptor type 1-like [Source:NCBI gene;Acc:799279]
80. prelp ENSDARG00000070597 99 1.51 - - - - 0.733 0.777 - - - proline/arginine-rich end leucine-rich repeat protein [Source:ZFIN;Acc:ZDB-GENE-080327-24]
81. zgc:162184 ENSDARG00000077217 47 1.507 - 0.729 - - - - 0.778 - - zgc:162184 [Source:ZFIN;Acc:ZDB-GENE-070424-83]
82. CDH12 CDH12 44 1.479 0.732 0.747 - - - - - - -
83. slc10a2 ENSDARG00000014916, ENSDARG00000112112 20 1.462 - - - - - - 0.759 - 0.703 solute carrier family 10 (sodium/bile acid cotransporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1328]
84. tnmd ENSDARG00000052615 42 1.452 0.751 - - - - 0.701 - - - tenomodulin [Source:ZFIN;Acc:ZDB-GENE-080220-31]
85. slc16a9a ENSDARG00000013926, ENSDARG00000113368 64 1.442 - - - - - 0.709 - - 0.733 solute carrier family 16, member 9a [Source:ZFIN;Acc:ZDB-GENE-040426-1364]
86. sele ENSDARG00000009123 122 1.44 - - 0.707 - 0.733 - - - - selectin E [Source:ZFIN;Acc:ZDB-GENE-041014-221]
87. si:ch73-127m5.3 si:ch73-127m5.3 1 1 1.000 - - - - - - - -
88. ctskl ctskl 17 1 - 1.000 - - - - - - -
89. SYTL2 SYTL2 139 1 1.000 - - - - - - - -
90. rcv1 rcv1 77 1 - 1.000 - - - - - - -
91. si:dkey-9i5.1 si:dkey-9i5.1 36 1 - - - - - - - 1.000 -
92. scara3 ENSDARG00000008060 169 1 - 1.000 - - - - - - - scavenger receptor class A, member 3 [Source:ZFIN;Acc:ZDB-GENE-041014-317]
93. si:dkeyp-118h3.1 si:dkeyp-118h3.1 0 1 - - - - - - 1.000 - -
94. abcc12 ENSDARG00000013050 27 1 - - - - - - 1.000 - - ATP-binding cassette, sub-family C (CFTR/MRP), member 12 [Source:ZFIN;Acc:ZDB-GENE-050517-25]
95. gria3b ENSDARG00000037498, ENSDARG00000111839 2 1 - 1.000 - - - - - - - glutamate receptor, ionotropic, AMPA 3b [Source:ZFIN;Acc:ZDB-GENE-030616-53]
96. rsad1 ENSDARG00000077698, ENSDARG00000112179 93 1 1.000 - - - - - - - - radical S-adenosyl methionine domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2508]
97. her1 ENSDARG00000014722 29 1 - - - - - - 1.000 - - hairy-related 1 [Source:ZFIN;Acc:ZDB-GENE-980526-125]
98. CABZ01038708.1 CABZ01038708.1 28 1 - 1.000 - - - - - - -
99. TULP1 TULP1 50 1 - - - - - - 1.000 - -
100. tdrd5 ENSDARG00000071450 25 1 - - - - - - 1.000 - - tudor domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-050208-502]

There are 1648 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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