Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for MSH3

Gene Name Gene ID Reads Annotation
MSH3 ENSGALG00000015589 83 mutS homolog 3 [Source:HGNC Symbol;Acc:HGNC:7326]











Genes with expression patterns similar to MSH3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. MSH3 ENSGALG00000015589 83 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 mutS homolog 3 [Source:HGNC Symbol;Acc:HGNC:7326]
2. TAOK1 ENSGALG00000004082 77 1.741 - - - - - 0.741 1.000 - - - TAO kinase 1 [Source:HGNC Symbol;Acc:HGNC:29259]
3. TDRP ENSGALG00000016356 36 1.607 - - - - - 0.784 - 0.823 - - testis development related protein [Source:HGNC Symbol;Acc:HGNC:26951]
4. LTK ENSGALG00000008615 33 1 - - - - - - - 1.000 - - leukocyte receptor tyrosine kinase
5. VWA5A ENSGALG00000028815 19 1 - - - - - - - 1.000 - - von Willebrand factor A domain containing 5A, transcript variant X5
6. ZNF654 ENSGALG00000022866 14 1 - - - - - - - 1.000 - - zinc finger protein 654 [Source:HGNC Symbol;Acc:HGNC:25612]
7. PGPEP1L ENSGALG00000007022 1 1 - - - - - - - 1.000 - - pyroglutamyl-peptidase I like [Source:HGNC Symbol;Acc:HGNC:27080]
8. P2RX3 ENSGALG00000040479 5 1 - - - - - - - 1.000 - - Gallus gallus purinergic receptor P2X 3 (P2RX3), mRNA. [Source:RefSeq mRNA;Acc:NM_001329216]
9. WASF2 ENSGALG00000014012 30 1 - - - - - - - 1.000 - - WAS protein family member 2 [Source:HGNC Symbol;Acc:HGNC:12733]
10. XPNPEP2 ENSGALG00000025935 57 1 - - - - - - - 1.000 - - X-prolyl aminopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:12823]
11. PSTPIP1 ENSGALG00000002786 9 1 - - - - - - - 1.000 - - proline-serine-threonine phosphatase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9580]
12. CLIP4 ENSGALG00000009024 4 1 - - - - - - - 1.000 - - CAP-Gly domain containing linker protein family member 4 [Source:HGNC Symbol;Acc:HGNC:26108]
13. C18orf42 C18orf42 3 1 - - - - - - - 1.000 - -
14. TMEM82 16 1 - - - - - - - 1.000 - - transmembrane protein 82, transcript variant X2
15. SNORD14 SNORD14 1032 1 - - - - - - - 1.000 - -
16. CCDC176 CCDC176 10 1 - - - - - - - 1.000 - -
17. ZFAT ENSGALG00000037698 34 1 - - - - - - - 1.000 - - zinc finger and AT-hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
18. NIT2 ENSGALG00000015275 278 1 - - - - - - - 1.000 - - nitrilase family member 2 [Source:HGNC Symbol;Acc:HGNC:29878]
19. MEP1A ENSGALG00000033033 2 1 - - - - - - - 1.000 - - meprin A subunit alpha [Source:NCBI gene;Acc:422060]
20. HPRTL ENSGALG00000005361 31 1 - - - - - - - 1.000 - - hypoxanthine-guanine phosphoribosyltransferase-like, transcript variant X1
21. PSMD4 ENSGALG00000028505 16 1 - - - - - - 1.000 - - - proteasome 26S subunit, non-ATPase 4 [Source:NCBI gene;Acc:100216364]
22. CLGN ENSGALG00000009826 54 1 - - - - - - - 1.000 - - calmegin [Source:HGNC Symbol;Acc:HGNC:2060]
23. ATP6V0E1 10 1 - - - - - - - 1.000 - - ATPase H+ transporting V0 subunit e1
24. ENSGALG00000028406 ENSGALG00000028406 1 1 - - - - - - - 1.000 - -
25. ENSGALG00000005650 ENSGALG00000005650 6 1 - - - - - - - 1.000 - -
26. GZMA ENSGALG00000013548 22 1 - - - - - - - 1.000 - - granzyme A [Source:NCBI gene;Acc:395108]
27. ENSGALG00000001404 ENSGALG00000001404 6 0.998 - - - - - - - 0.998 - -
28. ABHD10 ENSGALG00000015378 12 0.993 - - - - - - - 0.993 - - abhydrolase domain containing 10 [Source:HGNC Symbol;Acc:HGNC:25656]
29. ZDHHC16 ENSGALG00000007592 19 0.993 - - - - - - - 0.993 - - zinc finger DHHC-type containing 16 [Source:HGNC Symbol;Acc:HGNC:20714]
30. RLBP1 ENSGALG00000006676 52 0.993 - - - - - - - 0.993 - - retinaldehyde binding protein 1 [Source:NCBI gene;Acc:415492]
31. INO80D ENSGALG00000029701 51 0.941 - - - - - - - 0.941 - - INO80 complex subunit D [Source:HGNC Symbol;Acc:HGNC:25997]
32. DNAH1 ENSGALG00000004297 71 0.936 - - - - - - - 0.936 - - dynein axonemal heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
33. RXFP2 ENSGALG00000029764 1 0.92 - - - - - - - 0.920 - - relaxin/insulin-like family peptide receptor 2
34. HELB ENSGALG00000009885 8 0.92 - - - - - - - 0.920 - - DNA helicase B [Source:HGNC Symbol;Acc:HGNC:17196]
35. C10orf67 15 0.914 - - - - - - - 0.914 - - chromosome 10 open reading frame 67, transcript variant X2
36. CTNNAL1 ENSGALG00000013207 44 0.906 - - - - - - - 0.906 - - catenin alpha like 1 [Source:HGNC Symbol;Acc:HGNC:2512]
37. LRRC9 2 0.898 - - - - - - - 0.898 - - leucine rich repeat containing 9
38. GAR1 ENSGALG00000020164 149 0.894 - - - - - 0.894 - - - - GAR1 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:14264]
39. MTHFD1L ENSGALG00000012412 35 0.871 - - - - - - - 0.871 - - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:HGNC Symbol;Acc:HGNC:21055]
40. HBS1L ENSGALG00000013962 181 0.871 - - - - - - - 0.871 - - HBS1 like translational GTPase [Source:HGNC Symbol;Acc:HGNC:4834]
41. PDC ENSGALG00000030417 4 0.852 - - - - - - - 0.852 - - phosducin [Source:HGNC Symbol;Acc:HGNC:8759]
42. KCNJ9 ENSGALG00000009935 69 0.85 - - - - - - - 0.850 - - potassium inwardly-rectifying channel, subfamily J, member 9
43. PEX5L ENSGALG00000043386 5 0.847 - - - - - - - 0.847 - - peroxisomal biogenesis factor 5 like [Source:HGNC Symbol;Acc:HGNC:30024]
44. PLXDC2 ENSGALG00000007956 238 0.847 - - - - - - - 0.847 - - plexin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21013]
45. ENSGALG00000026169 ENSGALG00000026169 30 0.847 - - - - - - - 0.847 - -
46. ENSGALG00000023608 ENSGALG00000023608 1538 0.831 - - - - - - - 0.831 - -
47. FOXRED2 ENSGALG00000012530 36 0.826 - - - - - - - 0.826 - - FAD dependent oxidoreductase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:26264]
48. SYCP1 ENSGALG00000002511 13 0.823 - - - - - - - 0.823 - - synaptonemal complex protein 1 [Source:HGNC Symbol;Acc:HGNC:11487]
49. PKD2 ENSGALG00000010921 55 0.821 - - - - - 0.821 - - - - polycystin 2, transient receptor potential cation channel [Source:NCBI gene;Acc:422585]
50. CCDC125 ENSGALG00000015572 51 0.821 - - - - - 0.821 - - - - coiled-coil domain containing 125 [Source:HGNC Symbol;Acc:HGNC:28924]
51. DNAH5 ENSGALG00000012997 28 0.819 - - - - - - - 0.819 - - dynein axonemal heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
52. TLR15 ENSGALG00000008166 29 0.819 - - - - - 0.819 - - - - Gallus gallus toll-like receptor 15 (TLR15), mRNA. [Source:RefSeq mRNA;Acc:NM_001037835]
53. A1CF ENSGALG00000003765 36 0.819 - - - - - 0.819 - - - - APOBEC1 complementation factor [Source:HGNC Symbol;Acc:HGNC:24086]
54. ACE2 ENSGALG00000016554 7 0.807 - - - - - 0.807 - - - - angiotensin I converting enzyme 2 [Source:HGNC Symbol;Acc:HGNC:13557]
55. MOK ENSGALG00000011366 85 0.805 - - - - - - - 0.805 - - MOK protein kinase [Source:HGNC Symbol;Acc:HGNC:9833]
56. ATRN ENSGALG00000016034 16 0.804 - - - - - 0.804 - - - - attractin [Source:HGNC Symbol;Acc:HGNC:885]
57. ENSGALG00000027164 ENSGALG00000027164 8 0.804 - - - - - 0.804 - - - -
58. CRYBA4 ENSGALG00000005634 56 0.803 - - - - - 0.803 - - - - crystallin beta A4 [Source:NCBI gene;Acc:373998]
59. SKI ENSGALG00000001229 50 0.801 - - - - - 0.801 - - - - SKI proto-oncogene [Source:NCBI gene;Acc:428181]
60. SNORA3 SNORA3 14 0.8 - - - - - 0.800 - - - -
61. PIK3R4 ENSGALG00000040917 10 0.795 - - - - - 0.795 - - - - phosphoinositide-3-kinase regulatory subunit 4 [Source:HGNC Symbol;Acc:HGNC:8982]
62. ENSGALG00000011449 ENSGALG00000011449 2 0.795 - - - - - 0.795 - - - -
63. CRYAA ENSGALG00000016199 12 0.795 - - - - - 0.795 - - - - crystallin alpha A [Source:NCBI gene;Acc:418546]
64. ADAMTS15 ENSGALG00000001407 11 0.795 - - - - - 0.795 - - - - ADAM metallopeptidase with thrombospondin type 1 motif 15 [Source:HGNC Symbol;Acc:HGNC:16305]
65. EGF ENSGALG00000012155 8 0.795 - - - - - 0.795 - - - - epidermal growth factor [Source:NCBI gene;Acc:408035]
66. LIPML4 ENSGALG00000006302 2 0.795 - - - - - 0.795 - - - - lipase member M-like 4
67. GAK ENSGALG00000015352 99 0.795 - - - - - 0.795 - - - - cyclin G associated kinase [Source:HGNC Symbol;Acc:HGNC:4113]
68. CAPN3 ENSGALG00000009050 3 0.795 - - - - - 0.795 - - - - calpain 3 [Source:NCBI gene;Acc:423233]
69. ENSGALG00000021517 ENSGALG00000021517 7 0.795 - - - - - 0.795 - - - -
70. SMC1B ENSGALG00000014228 19 0.795 - - - - - 0.795 - - - - structural maintenance of chromosomes 1B [Source:HGNC Symbol;Acc:HGNC:11112]
71. TOR3A ENSGALG00000004216 1 0.795 - - - - - 0.795 - - - - torsin family 3 member A [Source:HGNC Symbol;Acc:HGNC:11997]
72. ENSGALG00000023475 ENSGALG00000023475 19 0.792 - - - - - 0.792 - - - -
73. PBEF1 PBEF1 25 0.788 - - - - - 0.788 - - - -
74. SLC22A18 ENSGALG00000006454 24 0.788 - - - - - 0.788 - - - - solute carrier family 22 member 18 [Source:HGNC Symbol;Acc:HGNC:10964]
75. TMEM62 ENSGALG00000009260 1170 0.787 - - - - - 0.787 - - - - transmembrane protein 62 [Source:HGNC Symbol;Acc:HGNC:26269]
76. FAM150B 44 0.785 - - - - - 0.785 - - - - family with sequence similarity 150 member B, transcript variant X2
77. IKZF1 ENSGALG00000013086 58 0.779 - - - - - 0.779 - - - - IKAROS family zinc finger 1 [Source:NCBI gene;Acc:395974]
78. AIDA ENSGALG00000009426 219 0.778 - - - - - - - - - 0.778 axin interactor, dorsalization associated [Source:NCBI gene;Acc:421335]
79. CELF2 ENSGALG00000034590 31 0.776 - - - - - - - 0.776 - - CUGBP Elav-like family member 2 [Source:NCBI gene;Acc:374111]
80. KCNS3 ENSGALG00000016470 4 0.775 - - - - - 0.775 - - - - potassium voltage-gated channel modifier subfamily S member 3 [Source:HGNC Symbol;Acc:HGNC:6302]
81. COQ2 ENSGALG00000041294 25 0.77 - - - - - 0.770 - - - - coenzyme Q2, polyprenyltransferase [Source:HGNC Symbol;Acc:HGNC:25223]
82. PNPLA7 ENSGALG00000008736 206 0.769 - - - - - 0.769 - - - - patatin like phospholipase domain containing 7 [Source:NCBI gene;Acc:427774]
83. RGS8 ENSGALG00000026263 124 0.768 - - - - - 0.768 - - - - regulator of G protein signaling 8 [Source:HGNC Symbol;Acc:HGNC:16810]
84. KIAA1217 ENSGALG00000007766 144 0.766 - - - - - - - 0.766 - - KIAA1217 [Source:HGNC Symbol;Acc:HGNC:25428]
85. GNAL ENSGALG00000013785 108 0.764 - - - - - 0.764 - - - - G protein subunit alpha L [Source:NCBI gene;Acc:474379]
86. ENSGALG00000027367 ENSGALG00000027367 7 0.763 - - - - - 0.763 - - - -
87. SLC12A8 ENSGALG00000012045 39 0.762 - - - - - 0.762 - - - - solute carrier family 12 member 8 [Source:HGNC Symbol;Acc:HGNC:15595]
88. MFSD9 ENSGALG00000016792 40 0.758 - - - - - - - 0.758 - - major facilitator superfamily domain containing 9 [Source:HGNC Symbol;Acc:HGNC:28158]
89. CLDN2 ENSGALG00000007311 4 0.756 - - - - - - - 0.756 - - claudin 2 [Source:NCBI gene;Acc:422292]
90. NPTXR ENSGALG00000041604 256 0.754 - - - - 0.754 - - - - - neuronal pentraxin receptor [Source:HGNC Symbol;Acc:HGNC:7954]
91. GXYLT2 ENSGALG00000007804 670 0.753 - - - - - - - 0.753 - - glucoside xylosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:33383]
92. MFSD12 ENSGALG00000000795 1150 0.752 - - - - - 0.752 - - - - major facilitator superfamily domain containing 12 [Source:HGNC Symbol;Acc:HGNC:28299]
93. FUCA2 ENSGALG00000013773 67 0.75 - - - - - - 0.750 - - - alpha-L-fucosidase 2 [Source:HGNC Symbol;Acc:HGNC:4008]
94. ASB1 ENSGALG00000004272 38 0.747 - - - - - - - 0.747 - - ankyrin repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:16011]
95. SOCS1 ENSGALG00000007158 14 0.746 - - - - - - - - - 0.746 suppressor of cytokine signaling 1 [Source:NCBI gene;Acc:416630]
96. ENSGALG00000000099 ENSGALG00000000099 16 0.744 - - - - - - - 0.744 - -
97. MEGF10 ENSGALG00000014699 248 0.743 - - - - - - - - - 0.743 multiple EGF like domains 10 [Source:HGNC Symbol;Acc:HGNC:29634]
98. K123 ENSGALG00000041978 16 0.742 - - - - - - 0.742 - - - K123 protein [Source:NCBI gene;Acc:395873]
99. TNN ENSGALG00000004538 21 0.742 - - - - - - 0.742 - - - tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
100. CCL5 ENSGALG00000043603 10 0.742 - - - - - - 0.742 - - - chemokine (C-C motif) ligand 5 [Source:NCBI gene;Acc:417465]

There are 74 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA