Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for MSC

Gene Name Gene ID Reads Annotation
MSC ENSDARG00000110016 5 musculin (activated B-cell factor-1) [Source:ZFIN;Acc:ZDB-GENE-090806-3]










Genes with expression patterns similar to MSC

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. MSC ENSDARG00000110016 5 3 - - - - - 1.000 - 1.000 1.000 musculin (activated B-cell factor-1) [Source:ZFIN;Acc:ZDB-GENE-090806-3]
2. si:ch211-210h11.7 si:ch211-210h11.7 32 1.513 - - - - - 0.732 - - 0.781
3. nitr3a_1 ENSDARG00000110676 44 1.477 - - - - - 0.722 - - 0.755 novel immune-type receptor 3a [Source:NCBI gene;Acc:60649]
4. pak1 ENSDARG00000103959 32 1 - - - - - 1.000 - - - p21 protein (Cdc42/Rac)-activated kinase 1 [Source:ZFIN;Acc:ZDB-GENE-030826-29]
5. lrrc4bb ENSDARG00000014792 47 1 - - - - - 1.000 - - - leucine rich repeat containing 4Bb [Source:ZFIN;Acc:ZDB-GENE-091116-44]
6. ano8a ENSDARG00000076265 20 1 - - - - - 1.000 - - - anoctamin 8a [Source:ZFIN;Acc:ZDB-GENE-070912-583]
7. si:ch73-234b20.4 112 1 - - - - - 1.000 - - - si:ch73-234b20.4, transcript variant X1
8. CABZ01112647.1 CABZ01112647.1 147 1 - - - - - 1.000 - - -
9. stxbp6l ENSDARG00000028354, ENSDARG00000112083, ENSDARG00000113476 43 0.994 - - - - - 0.994 - - - syntaxin binding protein 6 (amisyn), like [Source:ZFIN;Acc:ZDB-GENE-040724-16]
10. dclk1a ENSDARG00000018856 177 0.98 - - - - - 0.980 - - - doublecortin-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-061013-124]
11. zgc:162331 ENSDARG00000069607 13 0.98 - - - - - 0.980 - - - zgc:162331 [Source:ZFIN;Acc:ZDB-GENE-070410-75]
12. cnrip1b ENSDARG00000037337 39 0.98 - - - - - 0.980 - - - cannabinoid receptor interacting protein 1b [Source:ZFIN;Acc:ZDB-GENE-080722-33]
13. ascl1a ENSDARG00000038386 1290 0.952 - - - - - 0.952 - - - achaete-scute family bHLH transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-980526-90]
14. si:dkey-242k1.6 ENSDARG00000101205 112 0.946 - - - - - 0.946 - - - si:dkey-242k1.6 [Source:ZFIN;Acc:ZDB-GENE-041008-84]
15. DNHD1 DNHD1 4 0.943 - - - - - 0.943 - - -
16. CABZ01032454.1 CABZ01032454.1 7 0.943 - - - - - 0.943 - - -
17. sycp1 ENSDARG00000003904 8 0.943 - - - - - 0.943 - - - synaptonemal complex protein 1 [Source:ZFIN;Acc:ZDB-GENE-040910-6]
18. trim46b ENSDARG00000058649 54 0.943 - - - - - 0.943 - - - tripartite motif containing 46b [Source:ZFIN;Acc:ZDB-GENE-060503-466]
19. exosc4 ENSDARG00000103432 21 0.943 - - - - - 0.943 - - - exosome component 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1702]
20. CDH7 16 0.943 - - - - - 0.943 - - - cadherin 7, type 2, transcript variant X1
21. si:zfos-979f1.2 ENSDARG00000011652 24 0.943 - - - - - 0.943 - - - si:zfos-979f1.2 [Source:ZFIN;Acc:ZDB-GENE-091204-441]
22. qkib ENSDARG00000002026 15 0.943 - - - - - 0.943 - - - QKI, KH domain containing, RNA binding b [Source:ZFIN;Acc:ZDB-GENE-081028-54]
23. si:ch211-38m6.6 ENSDARG00000076959 12 0.943 - - - - - 0.943 - - - si:ch211-38m6.6 [Source:ZFIN;Acc:ZDB-GENE-070705-179]
24. MPV17L MPV17L 39 0.943 - - - - - 0.943 - - -
25. si:dkeyp-53d3.5 ENSDARG00000101542 171 0.943 - - - - - 0.943 - - - si:dkeyp-53d3.5 [Source:ZFIN;Acc:ZDB-GENE-050208-485]
26. oprm1 ENSDARG00000039434 22 0.943 - - - - - 0.943 - - - opioid receptor, mu 1 [Source:ZFIN;Acc:ZDB-GENE-010125-1]
27. CU184872.1 CU184872.1 15 0.943 - - - - - 0.943 - - -
28. si:dkey-192i18.3 si:dkey-192i18.3 47 0.943 - - - - - 0.943 - - -
29. STX3 ENSDARG00000051981 23 0.934 - - - - - 0.934 - - - syntaxin 3 [Source:HGNC Symbol;Acc:HGNC:11438]
30. CELF3 CELF3 163 0.93 - - - - - 0.930 - - -
31. b3gat1 b3gat1 77 0.918 - - - - - 0.918 - - -
32. ctc1 ENSDARG00000070119 8 0.903 - - - - - - - - 0.903 CTS telomere maintenance complex component 1 [Source:ZFIN;Acc:ZDB-GENE-061103-271]
33. efna3a ENSDARG00000014675 68 0.895 - - - - - 0.895 - - - ephrin-A3a [Source:ZFIN;Acc:ZDB-GENE-060503-186]
34. cadpsa ENSDARG00000043661 160 0.893 - - - - - 0.893 - - - Ca2+-dependent activator protein for secretion a [Source:ZFIN;Acc:ZDB-GENE-030616-525]
35. lrp8 ENSDARG00000070074, ENSDARG00000116879 323 0.892 - - - - - 0.892 - - - low density lipoprotein receptor-related protein 8, apolipoprotein e receptor [Source:ZFIN;Acc:ZDB-GENE-050506-134]
36. drd2a ENSDARG00000056926 40 0.885 - - - - - 0.885 - - - dopamine receptor D2a [Source:ZFIN;Acc:ZDB-GENE-021119-2]
37. mlc1 ENSDARG00000063026 29 0.885 - - - - - 0.885 - - - megalencephalic leukoencephalopathy with subcortical cysts 1 [Source:ZFIN;Acc:ZDB-GENE-050419-145]
38. SLC16A5 SLC16A5 7 0.883 - - - - - - - - 0.883
39. rnmtl1a 112 0.883 - - - - - 0.883 - - - RNA methyltransferase like 1a
40. nkx2.2b ENSDARG00000101549 266 0.881 - - - - - 0.881 - - - NK2 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-050217-3]
41. TP53BP2 TP53BP2 217 0.867 - - - - - 0.867 - - -
42. nkx2.2a ENSDARG00000053298 747 0.864 - - - - - 0.864 - - - NK2 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-403]
43. gnl1 ENSDARG00000061789, ENSDARG00000114276 78 0.862 - - - - - 0.862 - - - guanine nucleotide binding protein-like 1 [Source:ZFIN;Acc:ZDB-GENE-060323-1]
44. CU861453.1 ENSDARG00000097192 271 0.856 - - - - - 0.856 - - -
45. brd2b ENSDARG00000046087 73 0.851 - - - - - 0.851 - - - bromodomain containing 2b [Source:ZFIN;Acc:ZDB-GENE-070220-1]
46. THSD7B THSD7B 15 0.847 - - - - - - - - 0.847
47. atp8a1 ENSDARG00000063001 146 0.845 - - - - - 0.845 - - - ATPase phospholipid transporting 8A1 [Source:ZFIN;Acc:ZDB-GENE-060929-36]
48. rxrba ENSDARG00000078954 85 0.845 - - - - - 0.845 - - - retinoid x receptor, beta a [Source:ZFIN;Acc:ZDB-GENE-980526-436]
49. bicc2 ENSDARG00000076557 77 0.845 - - - - - 0.845 - - - bicaudal C homolog 2 [Source:ZFIN;Acc:ZDB-GENE-110110-3]
50. nptnb ENSDARG00000043864 165 0.842 - - - - - 0.842 - - - neuroplastin b [Source:ZFIN;Acc:ZDB-GENE-040426-1821]
51. tac1 ENSDARG00000014490 781 0.842 - - - - - 0.842 - - - tachykinin 1 [Source:ZFIN;Acc:ZDB-GENE-060503-904]
52. gpr98 gpr98 717 0.84 - - - - - 0.840 - - -
53. glipr1b ENSDARG00000030078 73 0.837 - - - - - 0.837 - - - GLI pathogenesis-related 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1459]
54. nfat5 nfat5 94 0.837 - - - - - 0.837 - - -
55. lin7b ENSDARG00000037932 150 0.835 - - - - - 0.835 - - - lin-7 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041011-1]
56. lingo2 lingo2 67 0.833 - - - - - 0.833 - - -
57. si:dkeyp-69c1.7 ENSDARG00000087165 31 0.822 - - - - - 0.822 - - - si:dkeyp-69c1.7 [Source:ZFIN;Acc:ZDB-GENE-091204-69]
58. nkx6.1 ENSDARG00000022569 3779 0.82 - - - - - 0.820 - - - NK6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-178]
59. neurod neurod 1189 0.818 - - - - - 0.818 - - -
60. CR524483.1 ENSDARG00000109248 86 0.817 - - - - - 0.817 - - - si:dkey-151p21.7 [Source:NCBI gene;Acc:562936]
61. SLITRK5 SLITRK5 122 0.817 - - - - - 0.817 - - -
62. hnrnpa3 ENSDARG00000059351 453 0.816 - - - - - 0.816 - - - heterogeneous nuclear ribonucleoprotein A3 [Source:ZFIN;Acc:ZDB-GENE-060224-1]
63. isl2b ENSDARG00000053499 132 0.812 - - - - - 0.812 - - - ISL LIM homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-990415-133]
64. grin2bb ENSDARG00000030376 60 0.812 - - - - - 0.812 - - - glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b [Source:ZFIN;Acc:ZDB-GENE-061207-27]
65. scml4 ENSDARG00000017266 194 0.812 - - - - - 0.812 - - - Scm polycomb group protein like 4 [Source:ZFIN;Acc:ZDB-GENE-041210-338]
66. rap2ab ENSDARG00000040246 63 0.812 - - - - - 0.812 - - - RAP2A, member of RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-090312-116]
67. ENTHD1 ENTHD1 235 0.81 - - - - - 0.810 - - -
68. olig2 ENSDARG00000040946 1405 0.81 - - - - - 0.810 - - - oligodendrocyte lineage transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4013]
69. lhfpl4a ENSDARG00000111810 206 0.807 - - - - - 0.807 - - - lipoma HMGIC fusion partner-like 4a [Source:ZFIN;Acc:ZDB-GENE-111017-1]
70. si:ch211-179l5.6 si:ch211-179l5.6 33 0.804 - - - - - - - - 0.804
71. gripap1 ENSDARG00000063069 171 0.801 - - - - - 0.801 - - - GRIP1 associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-070112-922]
72. mnx2a ENSDARG00000042106 939 0.801 - - - - - 0.801 - - - motor neuron and pancreas homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-040415-1]
73. GPR22 GPR22 33 0.796 - - - - - 0.796 - - -
74. AL935272.2 AL935272.2 37 0.795 - - - - - 0.795 - - -
75. znf236 ENSDARG00000095890 410 0.792 - - - - - 0.792 - - - zinc finger protein 236 [Source:ZFIN;Acc:ZDB-GENE-041111-195]
76. si:ch73-265d7.2 ENSDARG00000116713 2142 0.791 - - - - - 0.791 - - - si:ch73-265d7.2 [Source:ZFIN;Acc:ZDB-GENE-100922-146]
77. isg20l2 ENSDARG00000102266 167 0.79 - - - - - 0.790 - - - interferon stimulated exonuclease gene 20-like 2 [Source:ZFIN;Acc:ZDB-GENE-070928-8]
78. mapre3a ENSDARG00000020231 100 0.789 - - - - - 0.789 - - - microtubule-associated protein, RP/EB family, member 3a [Source:ZFIN;Acc:ZDB-GENE-050913-88]
79. olfm2a ENSDARG00000077847 230 0.789 - - - - - 0.789 - - - olfactomedin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-2882]
80. CT027835.1 CT027835.1 2 0.786 - - - - - - - 0.786 -
81. COL26A1 COL26A1 9 0.786 - - - - - - - - 0.786
82. DNAH11 ENSDARG00000077384, ENSDARG00000094282 372 0.785 - - - - - 0.785 - - - dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
83. ADAMTS3 ENSDARG00000060127 2839 0.785 - - - - - 0.785 - - - ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:ZFIN;Acc:ZDB-GENE-110223-1]
84. robo4 ENSDARG00000009387 98 0.783 - - - - - 0.783 - - - roundabout, axon guidance receptor, homolog 4 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-020809-1]
85. nsmce4a ENSDARG00000024311 125 0.782 - - - - - 0.782 - - - NSE4 homolog A, SMC5-SMC6 complex component [Source:ZFIN;Acc:ZDB-GENE-050522-111]
86. GABRG1 ENSDARG00000101995 201 0.781 - - - - - 0.781 - - - gamma-aminobutyric acid type A receptor gamma1 subunit [Source:ZFIN;Acc:ZDB-GENE-141215-66]
87. th ENSDARG00000030621, ENSDARG00000109947 6 0.777 - - - - - - - - 0.777 tyrosine hydroxylase [Source:ZFIN;Acc:ZDB-GENE-990621-5]
88. gfra3 ENSDARG00000087704 122 0.777 - - - - - 0.777 - - - GDNF family receptor alpha 3 [Source:ZFIN;Acc:ZDB-GENE-110512-1]
89. satb1a ENSDARG00000057649 250 0.775 - - - - - 0.775 - - - SATB homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-031010-36]
90. GJD2_1 GJD2_1 3045 0.775 - - - - - 0.775 - - -
91. CABZ01029738.1 CABZ01029738.1 327 0.774 - - - - - 0.774 - - -
92. csrp3 ENSDARG00000101706 21 0.773 - - - - - - - - 0.773 cysteine and glycine-rich protein 3 (cardiac LIM protein) [Source:ZFIN;Acc:ZDB-GENE-041010-119]
93. CHST7 ENSDARG00000044341 3 0.772 - - - - - - - - 0.772 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7 [Source:ZFIN;Acc:ZDB-GENE-131121-150]
94. olfch1 ENSDARG00000100026 3 0.772 - - - - - - - - 0.772 olfactory receptor C family, h1 [Source:ZFIN;Acc:ZDB-GENE-060503-819]
95. si:dkeyp-74a11.3 si:dkeyp-74a11.3 5 0.772 - - - - - - - - 0.772
96. bfb ENSDARG00000005616, ENSDARG00000110364 30 0.772 - - - - - - - - 0.772 complement component bfb [Source:ZFIN;Acc:ZDB-GENE-990415-34]
97. zgc:153921_1 ENSDARG00000020738, ENSDARG00000038405 19 0.772 - - - - - - - - 0.772 zgc:153921 [Source:ZFIN;Acc:ZDB-GENE-060929-816]
98. C20orf26 C20orf26 1 0.772 - - - - - - - - 0.772
99. si:dkey-61p9.7 ENSDARG00000068865 3 0.772 - - - - - - - - 0.772 si:dkey-61p9.7 [Source:ZFIN;Acc:ZDB-GENE-041210-241]
100. AKNA_1 AKNA_1 2 0.772 - - - - - - - - 0.772

There are 319 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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