Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for MDC1

Gene Name Gene ID Reads Annotation
MDC1 ENSDARG00000086764 1851 mediator of DNA damage checkpoint 1 [Source:ZFIN;Acc:ZDB-GENE-060810-185]










Genes with expression patterns similar to MDC1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. MDC1 ENSDARG00000086764 1851 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 mediator of DNA damage checkpoint 1 [Source:ZFIN;Acc:ZDB-GENE-060810-185]
2. setd8a 2549 2.701 - 0.762 0.958 - 0.981 - - - - SET domain containing (lysine methyltransferase) 8a
3. CPEB4 CPEB4 3249 2.648 - - 0.943 - 0.951 - 0.754 - -
4. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 2.51 - - 0.878 - 0.924 0.708 - - - pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
5. sde2 ENSDARG00000024124, ENSDARG00000109881 2342 2.437 - - - 0.727 0.972 - - - 0.738 SDE2 telomere maintenance homolog (S. pombe) [Source:ZFIN;Acc:ZDB-GENE-050417-270]
6. exoc7 ENSDARG00000087229 987 2.402 - 0.872 - - - 0.780 0.750 - - exocyst complex component 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2752]
7. pou3f3a ENSDARG00000042032 2835 2.349 0.701 - 0.938 - - - - 0.710 - POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
8. ssrp1a ENSDARG00000037397, ENSDARG00000116441 3999 2.289 - 0.785 - 0.779 - 0.725 - - - structure specific recognition protein 1a [Source:ZFIN;Acc:ZDB-GENE-031118-9]
9. SERBP1 SERBP1 9276 2.279 - - 0.846 - - 0.707 0.726 - -
10. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 2.201 0.716 - - 0.746 - - 0.739 - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
11. eya3 ENSDARG00000036100 1965 1.907 - - 0.965 - 0.942 - - - - EYA transcriptional coactivator and phosphatase 3 [Source:ZFIN;Acc:ZDB-GENE-060503-864]
12. alg5 ENSDARG00000021938, ENSDARG00000061235 2279 1.9 - - 0.953 - 0.947 - - - - asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase) [Source:ZFIN;Acc:ZDB-GENE-030131-6586]
13. poc1bl ENSDARG00000012745 2451 1.893 - - 0.939 - 0.954 - - - - POC1 centriolar protein homolog B (Chlamydomonas), like [Source:ZFIN;Acc:ZDB-GENE-050306-41]
14. adnp2b ENSDARG00000028431 4683 1.836 - - 0.978 - - 0.858 - - - ADNP homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5930]
15. gon4l ENSDARG00000005867 982 1.828 - - - - 0.978 0.850 - - - gon-4-like (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-070117-2447]
16. wdr46_1 ENSDARG00000095879 1291 1.824 - - 0.961 - - 0.863 - - - WD repeat domain 46 [Source:ZFIN;Acc:ZDB-GENE-040426-1264]
17. sdc4 ENSDARG00000059906 10105 1.801 - - 0.895 - 0.906 - - - - syndecan 4 [Source:ZFIN;Acc:ZDB-GENE-061111-1]
18. GTSE1 ENSDARG00000013719 1115 1.77 - - 0.968 - - 0.802 - - - G-2 and S-phase expressed 1 [Source:ZFIN;Acc:ZDB-GENE-050522-493]
19. pbx2 ENSDARG00000019717 6892 1.769 - - 0.877 - 0.892 - - - - pre-B-cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-000405-5]
20. lrrfip2 ENSDARG00000010400 2633 1.758 - - - - 0.974 0.784 - - - leucine rich repeat (in FLII) interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7781]
21. fbl ENSDARG00000053912 5891 1.753 - - 0.944 - 0.809 - - - - fibrillarin [Source:ZFIN;Acc:ZDB-GENE-040426-1936]
22. clstn1 ENSDARG00000031720 5286 1.752 0.832 - 0.920 - - - - - - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]
23. ppp2r5eb ENSDARG00000069118 1902 1.746 - - 0.970 - - - - 0.776 - protein phosphatase 2, regulatory subunit B', epsilon isoform b [Source:ZFIN;Acc:ZDB-GENE-030904-6]
24. CABZ01003826.1_1 CABZ01003826.1_1 1154 1.737 - - - - 0.970 - - 0.767 -
25. fzd1 ENSDARG00000106062 1581 1.736 - - - - 0.968 0.768 - - - frizzled class receptor 1 [Source:ZFIN;Acc:ZDB-GENE-990415-219]
26. nol8 ENSDARG00000044143 425 1.733 - 0.758 - - 0.975 - - - - nucleolar protein 8 [Source:ZFIN;Acc:ZDB-GENE-050208-491]
27. dla ENSDARG00000010791 9281 1.733 0.795 - - - 0.938 - - - - deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
28. tmem2 2572 1.727 - - 0.962 - - 0.765 - - - transmembrane protein 2, transcript variant X1
29. col5a3a ENSDARG00000098294 1004 1.723 0.780 - - - 0.943 - - - - collagen, type V, alpha 3a [Source:ZFIN;Acc:ZDB-GENE-030131-968]
30. hoxc4a ENSDARG00000070338 1382 1.722 0.749 - - - 0.973 - - - - homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
31. rnd1l rnd1l 984 1.721 0.760 - 0.961 - - - - - -
32. hsbp1a ENSDARG00000069425 1086 1.718 0.750 - 0.968 - - - - - - heat shock factor binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050320-136]
33. si:ch211-161h7.4 ENSDARG00000087238 4399 1.718 - - 0.831 - 0.887 - - - - si:ch211-161h7.4 [Source:ZFIN;Acc:ZDB-GENE-091118-108]
34. zc3h18 ENSDARG00000062506 1676 1.712 - 0.735 0.977 - - - - - - zinc finger CCCH-type containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-13]
35. pola2 ENSDARG00000015070 2286 1.708 0.736 - 0.972 - - - - - - polymerase (DNA directed), alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-778]
36. ctnnd2b ENSDARG00000003779 964 1.707 0.727 - - - 0.980 - - - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
37. xpnpep1 ENSDARG00000029011 1723 1.703 - - 0.966 - - 0.737 - - - X-prolyl aminopeptidase (aminopeptidase P) 1, soluble [Source:ZFIN;Acc:ZDB-GENE-040426-999]
38. ncaph2 ENSDARG00000033757 1042 1.702 - - - - 0.978 - 0.724 - - non-SMC condensin II complex, subunit H2 [Source:ZFIN;Acc:ZDB-GENE-041210-172]
39. tdg tdg 3269 1.7 0.746 - - - 0.954 - - - -
40. zmpste24 ENSDARG00000044090, ENSDARG00000115387 3873 1.699 - - - - 0.917 0.782 - - - zinc metallopeptidase, STE24 homolog [Source:ZFIN;Acc:ZDB-GENE-030131-6312]
41. rbm17 ENSDARG00000031346 2079 1.695 - - - - 0.957 - - - 0.738 RNA binding motif protein 17 [Source:ZFIN;Acc:ZDB-GENE-040426-817]
42. zgc:55558 ENSDARG00000013161, ENSDARG00000111354 1687 1.694 - - 0.972 - - - - - 0.722 zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]
43. ccdc85ca ENSDARG00000005232 3218 1.693 0.754 - 0.939 - - - - - - coiled-coil domain containing 85C, a [Source:ZFIN;Acc:ZDB-GENE-060825-198]
44. gnao1a ENSDARG00000016676 8184 1.692 0.715 - - - 0.977 - - - - guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a [Source:ZFIN;Acc:ZDB-GENE-040426-1757]
45. ezh2 ENSDARG00000010571 3273 1.69 - - - - 0.940 - 0.750 - - enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:ZFIN;Acc:ZDB-GENE-041111-259]
46. hnrnpd ENSDARG00000059246, ENSDARG00000109297, ENSDARG00000113453 3440 1.69 - - 0.934 - - - 0.756 - - heterogeneous nuclear ribonucleoprotein D [Source:ZFIN;Acc:ZDB-GENE-070424-97]
47. rpa2 ENSDARG00000037188 4284 1.687 - 0.801 - - 0.886 - - - - replication protein A2 [Source:ZFIN;Acc:ZDB-GENE-010131-3]
48. luc7l ENSDARG00000055903 3357 1.676 - - 0.930 - - - 0.746 - - LUC7-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-111]
49. nes ENSDARG00000088805 2710 1.675 0.779 - 0.896 - - - - - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
50. mier1a ENSDARG00000041072 1690 1.671 - - - 0.705 0.966 - - - - mesoderm induction early response 1a, transcriptional regulator [Source:ZFIN;Acc:ZDB-GENE-030131-409]
51. COA6 ENSDARG00000092677 1877 1.668 - - 0.963 - - 0.705 - - - cytochrome c oxidase assembly factor 6 [Source:ZFIN;Acc:ZDB-GENE-070705-152]
52. rtf1 ENSDARG00000008947 6596 1.662 0.773 - 0.889 - - - - - - RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
53. golga7 ENSDARG00000057676 4691 1.659 - - - 0.760 0.899 - - - - golgin A7 [Source:ZFIN;Acc:ZDB-GENE-040625-142]
54. gpm6bb ENSDARG00000001676 2005 1.652 - - 0.905 0.747 - - - - - glycoprotein M6Bb [Source:ZFIN;Acc:ZDB-GENE-030710-10]
55. dut ENSDARG00000106529 3120 1.644 0.727 - 0.917 - - - - - - deoxyuridine triphosphatase [Source:ZFIN;Acc:ZDB-GENE-041010-93]
56. ints1 ENSDARG00000100419 1958 1.641 - - - - 0.936 0.705 - - - integrator complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6523]
57. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 1.635 0.744 - - - 0.891 - - - - protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
58. zswim5 ENSDARG00000055900 4243 1.634 - - 0.907 - - - 0.727 - - zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
59. xrn2 ENSDARG00000101900 2875 1.634 - 0.818 - - - 0.816 - - - 5'-3' exoribonuclease 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2874]
60. DALRD3 ENSDARG00000068602 3062 1.631 - - 0.900 - - 0.731 - - - DALR anticodon binding domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-061103-415]
61. eif4h ENSDARG00000042252 6742 1.626 - - 0.839 0.787 - - - - - eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
62. ttk ENSDARG00000041361 3911 1.625 - - 0.864 - - - 0.761 - - ttk protein kinase [Source:ZFIN;Acc:ZDB-GENE-030123-1]
63. ZFHX3 ENSDARG00000103057 7759 1.607 - - - 0.800 0.807 - - - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
64. nr2f1a ENSDARG00000052695 5037 1.6 0.715 - 0.885 - - - - - - nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
65. CXXC5 CXXC5 1332 1.598 - 0.724 - - - 0.874 - - -
66. ppp2r2d ENSDARG00000102009 5710 1.593 - 0.724 0.869 - - - - - - protein phosphatase 2, regulatory subunit B, delta [Source:ZFIN;Acc:ZDB-GENE-040426-2086]
67. nop16 ENSDARG00000044402 3645 1.592 - - - - 0.864 - 0.728 - - NOP16 nucleolar protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-267]
68. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 1.585 0.743 - 0.842 - - - - - - zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
69. snrpb ENSDARG00000011125 11729 1.584 - - 0.714 - 0.870 - - - - small nuclear ribonucleoprotein polypeptides B and B1 [Source:ZFIN;Acc:ZDB-GENE-040426-1819]
70. kmt2bb ENSDARG00000060697 5230 1.582 - - - 0.723 0.859 - - - - lysine (K)-specific methyltransferase 2Bb [Source:ZFIN;Acc:ZDB-GENE-080521-1]
71. hoxb10a ENSDARG00000011579 2135 1.58 0.813 - - - - - 0.767 - - homeobox B10a [Source:ZFIN;Acc:ZDB-GENE-000328-2]
72. wu:fb17g07 wu:fb17g07 10567 1.58 0.874 - - - - - 0.706 - -
73. npm1b ENSDARG00000037675 5448 1.576 - - - - 0.843 - 0.733 - - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
74. nova2 ENSDARG00000017673 7685 1.575 0.785 - - - 0.790 - - - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
75. htt ENSDARG00000052866 844 1.575 0.843 0.732 - - - - - - - huntingtin [Source:ZFIN;Acc:ZDB-GENE-990415-131]
76. uchl5 ENSDARG00000103404, ENSDARG00000110434 4029 1.564 - - 0.858 0.706 - - - - - ubiquitin carboxyl-terminal hydrolase L5 [Source:ZFIN;Acc:ZDB-GENE-040426-2051]
77. lmbrd1 ENSDARG00000104223 924 1.562 - - - 0.726 - 0.836 - - - LMBR1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041212-36]
78. ENDOD1_5 ENDOD1_5 8723 1.558 0.820 - - 0.738 - - - - -
79. erbb2ip 403 1.546 - - - - - 0.837 0.709 - - erbb2 interacting protein, transcript variant X3
80. akap12b ENSDARG00000055678, ENSDARG00000110544 8317 1.546 0.713 - - - 0.833 - - - - A kinase (PRKA) anchor protein 12b [Source:ZFIN;Acc:ZDB-GENE-030131-9753]
81. mul1a ENSDARG00000021398 438 1.541 - 0.738 - - - 0.803 - - - mitochondrial E3 ubiquitin protein ligase 1a [Source:ZFIN;Acc:ZDB-GENE-050102-5]
82. xpo7 ENSDARG00000005540, ENSDARG00000110221 4566 1.539 - - - 0.795 - - 0.744 - - exportin 7 [Source:ZFIN;Acc:ZDB-GENE-060628-2]
83. fam60al_1 949 1.532 - 0.739 - - - 0.793 - - - family with sequence similarity 60, member A, like
84. C20H12orf57 C20H12orf57 3325 1.531 - - - - 0.706 0.825 - - -
85. aspm ENSDARG00000103754 5708 1.529 - 0.783 - 0.746 - - - - - abnormal spindle microtubule assembly [Source:ZFIN;Acc:ZDB-GENE-050208-620]
86. sart3 ENSDARG00000008032 2594 1.525 - - - 0.774 - - 0.751 - - squamous cell carcinoma antigen recognized by T cells 3 [Source:ZFIN;Acc:ZDB-GENE-040724-10]
87. ncapd3 ENSDARG00000034773, ENSDARG00000111405 823 1.519 0.812 - - - - - - - 0.707 non-SMC condensin II complex, subunit D3 [Source:ZFIN;Acc:ZDB-GENE-040426-737]
88. wrap53 ENSDARG00000086150 975 1.517 - - - 0.747 - - 0.770 - - WD repeat containing, antisense to TP53 [Source:ZFIN;Acc:ZDB-GENE-030131-515]
89. tardbp ENSDARG00000040031, ENSDARG00000115667 13815 1.516 - - 0.722 0.794 - - - - - TAR DNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-3777]
90. si:ch211-69g19.2 ENSDARG00000070656, ENSDARG00000110191, ENSDARG00000114528 2860 1.513 0.753 - - 0.760 - - - - - si:ch211-69g19.2 [Source:ZFIN;Acc:ZDB-GENE-030804-13]
91. nedd4l ENSDARG00000060006 1669 1.51 - - - - - 0.784 - 0.726 - neural precursor cell expressed, developmentally down-regulated 4-like [Source:ZFIN;Acc:ZDB-GENE-051118-2]
92. eif2s3 ENSDARG00000008292 17051 1.51 0.726 - - - 0.784 - - - - eukaryotic translation initiation factor 2, subunit 3 gamma [Source:ZFIN;Acc:ZDB-GENE-030131-5552]
93. drg1 ENSDARG00000039345 7545 1.509 0.703 - 0.806 - - - - - - developmentally regulated GTP binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8767]
94. ppig ENSDARG00000044431 3427 1.509 - 0.755 - 0.754 - - - - - peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
95. atf7ip ENSDARG00000069619 5495 1.507 0.740 - - - - - 0.767 - - activating transcription factor 7 interacting protein [Source:ZFIN;Acc:ZDB-GENE-061103-178]
96. ubr2 ENSDARG00000070164 3960 1.507 - - - 0.738 - 0.769 - - - ubiquitin protein ligase E3 component n-recognin 2 [Source:ZFIN;Acc:ZDB-GENE-081107-29]
97. mob1ba ENSDARG00000009169 1019 1.506 0.726 0.780 - - - - - - - MOB kinase activator 1Ba [Source:ZFIN;Acc:ZDB-GENE-040426-919]
98. sub1b ENSDARG00000007720, ENSDARG00000112010 2258 1.505 - - - - - 0.745 0.760 - - SUB1 homolog, transcriptional regulator b [Source:ZFIN;Acc:ZDB-GENE-040718-209]
99. lmnb1 ENSDARG00000044299 9817 1.502 - - 0.802 - 0.700 - - - - lamin B1 [Source:ZFIN;Acc:ZDB-GENE-020424-2]
100. elof1 ENSDARG00000099453 6176 1.495 - - - - - 0.748 0.747 - - ELF1 homolog, elongation factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1385]

There are 1590 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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