Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Ldlr

Gene Name Gene ID Reads Annotation
Ldlr ENSMUSG00000032193 1641 low density lipoprotein receptor [Source:MGI Symbol;Acc:MGI:96765]







Genes with expression patterns similar to Ldlr

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Ldlr ENSMUSG00000032193 1641 6 1.000 1.000 1.000 1.000 1.000 1.000 low density lipoprotein receptor [Source:MGI Symbol;Acc:MGI:96765]
2. Dnm1l ENSMUSG00000022789 2617 0.884 - 0.884 - - - - dynamin 1-like [Source:MGI Symbol;Acc:MGI:1921256]
3. Slitrk5 ENSMUSG00000033214 1539 0.88 - 0.880 - - - - SLIT and NTRK-like family, member 5 [Source:MGI Symbol;Acc:MGI:2679448]
4. Ddx41 ENSMUSG00000021494 788 0.874 - 0.874 - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Source:MGI Symbol;Acc:MGI:1920185]
5. 2410089E03Rik 1186 0.866 - 0.866 - - - - RIKEN cDNA 2410089E03 gene, transcript variant X8
6. Zfp148 ENSMUSG00000022811 3100 0.861 - 0.861 - - - - zinc finger protein 148 [Source:MGI Symbol;Acc:MGI:1332234]
7. Zw10 ENSMUSG00000032264 1164 0.852 - 0.852 - - - - zw10 kinetochore protein [Source:MGI Symbol;Acc:MGI:1349478]
8. Pgls ENSMUSG00000031807 1593 0.843 - 0.843 - - - - 6-phosphogluconolactonase [Source:MGI Symbol;Acc:MGI:1913421]
9. Rpf1 ENSMUSG00000028187 1517 0.84 - 0.840 - - - - ribosome production factor 1 homolog [Source:MGI Symbol;Acc:MGI:1917535]
10. Kdelc1 ENSMUSG00000026047 1038 0.826 - 0.826 - - - - KDEL (Lys-Asp-Glu-Leu) containing 1 [Source:MGI Symbol;Acc:MGI:1919300]
11. Ino80d ENSMUSG00000040865 1226 0.819 - 0.819 - - - - INO80 complex subunit D [Source:MGI Symbol;Acc:MGI:3027003]
12. Stt3a ENSMUSG00000032116 1910 0.814 - 0.814 - - - - STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:105124]
13. Cuedc2 ENSMUSG00000036748 1697 0.814 - 0.814 - - - - CUE domain containing 2 [Source:MGI Symbol;Acc:MGI:1914366]
14. Ambra1 ENSMUSG00000040506 2512 0.808 - 0.808 - - - - autophagy/beclin 1 regulator 1 [Source:MGI Symbol;Acc:MGI:2443564]
15. Fam126b ENSMUSG00000038174 1511 0.807 - 0.807 - - - - family with sequence similarity 126, member B [Source:MGI Symbol;Acc:MGI:1098784]
16. Gm14513 ENSMUSG00000080811 3705 0.801 - 0.801 - - - - predicted gene 14513 [Source:MGI Symbol;Acc:MGI:3648369]
17. Dtl ENSMUSG00000037474 5193 0.8 - 0.800 - - - - denticleless E3 ubiquitin protein ligase [Source:MGI Symbol;Acc:MGI:1924093]
18. Dtx2 ENSMUSG00000004947 1662 0.799 - 0.799 - - - - deltex 2, E3 ubiquitin ligase [Source:MGI Symbol;Acc:MGI:1921448]
19. Nid1 ENSMUSG00000005397 2804 0.799 - 0.799 - - - - nidogen 1 [Source:MGI Symbol;Acc:MGI:97342]
20. Camk1g ENSMUSG00000016179 1159 0.796 - 0.796 - - - - calcium/calmodulin-dependent protein kinase I gamma [Source:MGI Symbol;Acc:MGI:2388073]
21. B230354K17Rik ENSMUSG00000097119 2211 0.795 - 0.795 - - - - RIKEN cDNA B230354K17 gene [Source:MGI Symbol;Acc:MGI:2443272]
22. Rpa1 ENSMUSG00000000751 2652 0.793 - - 0.793 - - - replication protein A1 [Source:MGI Symbol;Acc:MGI:1915525]
23. 2810006K23Rik ENSMUSG00000047635 1607 0.782 - 0.782 - - - - RIKEN cDNA 2810006K23 gene [Source:MGI Symbol;Acc:MGI:1919900]
24. Ik ENSMUSG00000024474 6835 0.782 - 0.782 - - - - IK cytokine [Source:MGI Symbol;Acc:MGI:1345142]
25. Dse ENSMUSG00000039497 2297 0.778 - 0.778 - - - - dermatan sulfate epimerase [Source:MGI Symbol;Acc:MGI:2443455]
26. Rab12 ENSMUSG00000023460 4871 0.777 - 0.777 - - - - RAB12, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:894284]
27. Trabd2b ENSMUSG00000070867 1254 0.776 - 0.776 - - - - TraB domain containing 2B [Source:MGI Symbol;Acc:MGI:3650152]
28. Rian ENSMUSG00000097451, ENSMUSG00000107391 6847 0.771 - 0.771 - - - - RNA imprinted and accumulated in nucleus [Source:MGI Symbol;Acc:MGI:1922995]
29. Ndnf ENSMUSG00000049001 1899 0.766 - 0.766 - - - - neuron-derived neurotrophic factor [Source:MGI Symbol;Acc:MGI:1915419]
30. Spg21 ENSMUSG00000032388 4418 0.765 - 0.765 - - - - SPG21, maspardin [Source:MGI Symbol;Acc:MGI:106403]
31. Ss18l1 ENSMUSG00000039086 356 0.762 - - 0.762 - - - SS18, nBAF chromatin remodeling complex subunit like 1 [Source:MGI Symbol;Acc:MGI:2444061]
32. Zzef1 ENSMUSG00000055670 953 0.759 - - 0.759 - - - zinc finger, ZZ-type with EF hand domain 1 [Source:MGI Symbol;Acc:MGI:2444286]
33. Stx3 ENSMUSG00000041488 1755 0.747 - 0.747 - - - - syntaxin 3 [Source:MGI Symbol;Acc:MGI:103077]
34. Atp5d ENSMUSG00000003072 10613 0.747 - 0.747 - - - - ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit [Source:MGI Symbol;Acc:MGI:1913293]
35. Tagln2 ENSMUSG00000026547 3265 0.745 - 0.745 - - - - transgelin 2 [Source:MGI Symbol;Acc:MGI:1312985]
36. Skida1 ENSMUSG00000054074 1796 0.744 - 0.744 - - - - SKI/DACH domain containing 1 [Source:MGI Symbol;Acc:MGI:1919918]
37. Sltm ENSMUSG00000032212 5014 0.742 - 0.742 - - - - SAFB-like, transcription modulator [Source:MGI Symbol;Acc:MGI:1913910]
38. Ap3b1 ENSMUSG00000021686 3044 0.732 - 0.732 - - - - adaptor-related protein complex 3, beta 1 subunit [Source:MGI Symbol;Acc:MGI:1333879]
39. Nol7 ENSMUSG00000063200 2511 0.732 - 0.732 - - - - nucleolar protein 7 [Source:MGI Symbol;Acc:MGI:1917328]
40. Trappc2 ENSMUSG00000079317 429 0.727 - - - - - 0.727 trafficking protein particle complex 2 [Source:MGI Symbol;Acc:MGI:1913476]
41. Atxn7l1 ENSMUSG00000020564 965 0.726 - - - - - 0.726 ataxin 7-like 1 [Source:MGI Symbol;Acc:MGI:3584458]
42. Sra1 ENSMUSG00000006050 3267 0.725 - 0.725 - - - - steroid receptor RNA activator 1 [Source:MGI Symbol;Acc:MGI:1344414]
43. Phf10 ENSMUSG00000023883 1014 0.723 - - - - - 0.723 PHD finger protein 10 [Source:MGI Symbol;Acc:MGI:1919307]
44. Tfb2m ENSMUSG00000026492 253 0.723 - - 0.723 - - - transcription factor B2, mitochondrial [Source:MGI Symbol;Acc:MGI:107937]
45. Kptn ENSMUSG00000006021 499 0.721 - - 0.721 - - - kaptin [Source:MGI Symbol;Acc:MGI:1890380]
46. Cmbl ENSMUSG00000022235 69 0.715 - - - - - 0.715 carboxymethylenebutenolidase-like (Pseudomonas) [Source:MGI Symbol;Acc:MGI:1916824]
47. Immp2l ENSMUSG00000056899 263 0.715 - - - - - 0.715 IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2135611]
48. Gemin2 ENSMUSG00000060121 858 0.714 - - - - 0.714 - gem nuclear organelle associated protein 2 [Source:MGI Symbol;Acc:MGI:1913853]
49. Slc5a6 ENSMUSG00000006641 222 0.714 - - - - - 0.714 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 [Source:MGI Symbol;Acc:MGI:2660847]
50. Colgalt1 ENSMUSG00000034807 437 0.712 - 0.712 - - - - collagen beta(1-O)galactosyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924348]
51. Vat1l ENSMUSG00000046844 448 0.712 - 0.712 - - - - vesicle amine transport protein 1 like [Source:MGI Symbol;Acc:MGI:2142534]
52. Whsc1l1 2043 0.71 - 0.710 - - - - Wolf-Hirschhorn syndrome candidate 1-like 1 (human), transcript variant X6
53. Ptbp2 ENSMUSG00000028134 3052 0.709 - - 0.709 - - - polypyrimidine tract binding protein 2 [Source:MGI Symbol;Acc:MGI:1860489]
54. Wdr53 ENSMUSG00000022787 526 0.706 - - - - - 0.706 WD repeat domain 53 [Source:MGI Symbol;Acc:MGI:1916230]
55. Celf3 ENSMUSG00000028137 141 0.703 - 0.703 - - - - CUGBP, Elav-like family member 3 [Source:MGI Symbol;Acc:MGI:1926034]
56. Pdk2 ENSMUSG00000038967 209 0.703 - - - - - 0.703 pyruvate dehydrogenase kinase, isoenzyme 2 [Source:MGI Symbol;Acc:MGI:1343087]
57. Zfp94 ENSMUSG00000074282 203 0.702 - - 0.702 - - - zinc finger protein 94 [Source:MGI Symbol;Acc:MGI:107610]
58. Pnkp ENSMUSG00000002963 1708 0.702 - - 0.702 - - - polynucleotide kinase 3'- phosphatase [Source:MGI Symbol;Acc:MGI:1891698]
59. Eef1a2 ENSMUSG00000016349 41 0.702 - 0.702 - - - - eukaryotic translation elongation factor 1 alpha 2 [Source:MGI Symbol;Acc:MGI:1096317]
60. Gm13033 ENSMUSG00000083816 71 0.702 - 0.702 - - - - predicted gene 13033 [Source:MGI Symbol;Acc:MGI:3649305]
61. Gm26869 ENSMUSG00000097879 104 0.702 - 0.702 - - - - predicted gene, 26869 [Source:MGI Symbol;Acc:MGI:5477363]
62. BC027582 BC027582 61 0.701 - 0.701 - - - -
63. Mageh1 ENSMUSG00000047238 3006 0.701 - 0.701 - - - - melanoma antigen, family H, 1 [Source:MGI Symbol;Acc:MGI:1922875]
64. Snora23 ENSMUSG00000064451 53 0.7 - 0.700 - - - - small nucleolar RNA, H/ACA box 23 [Source:MGI Symbol;Acc:MGI:3819494]
65. Vps16 ENSMUSG00000027411 1174 0.7 - 0.700 - - - - VSP16 CORVET/HOPS core subunit [Source:MGI Symbol;Acc:MGI:2136772]
66. Pitpnc1 ENSMUSG00000040430 4748 0.7 - 0.700 - - - - phosphatidylinositol transfer protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1919045]
67. Stc2 ENSMUSG00000020303 138 0.7 - 0.700 - - - - stanniocalcin 2 [Source:MGI Symbol;Acc:MGI:1316731]
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA