Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LSMD1

Gene Name Gene ID Reads Annotation
LSMD1 LSMD1 2562











Genes with expression patterns similar to LSMD1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LSMD1 LSMD1 2562 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000
2. CTCF 10811 1.525 - - - - - - 0.707 0.818 - - CCCTC-binding factor, transcript variant X2
3. TMEM65 ENSGALG00000037371 776 0.996 - - - - 0.996 - - - - - transmembrane protein 65 [Source:NCBI gene;Acc:428387]
4. MAP3K13 ENSGALG00000006655 632 0.996 - - - - 0.996 - - - - - mitogen-activated protein kinase kinase kinase 13 [Source:HGNC Symbol;Acc:HGNC:6852]
5. RHBDF1 ENSGALG00000007434 2359 0.995 - - - - 0.995 - - - - - rhomboid 5 homolog 1 [Source:HGNC Symbol;Acc:HGNC:20561]
6. PCIF1 ENSGALG00000023547 867 0.995 - - - - 0.995 - - - - - PDX1 C-terminal inhibiting factor 1 [Source:HGNC Symbol;Acc:HGNC:16200]
7. KAT6A ENSGALG00000003641 2631 0.995 - - - - 0.995 - - - - - lysine acetyltransferase 6A [Source:HGNC Symbol;Acc:HGNC:13013]
8. ENSGALG00000005720 ENSGALG00000005720 1666 0.995 - - - - 0.995 - - - - -
9. MXD4 ENSGALG00000015688 1472 0.995 - - - - 0.995 - - - - - MAX dimerization protein 4 [Source:NCBI gene;Acc:422890]
10. CSNK1E ENSGALG00000032257 2165 0.994 - - - - 0.994 - - - - - casein kinase 1 epsilon [Source:NCBI gene;Acc:378891]
11. C9orf89 C9orf89 3056 0.994 - - - - 0.994 - - - - -
12. PDXP ENSGALG00000023131 2663 0.994 - - - - 0.994 - - - - - pyridoxal phosphatase [Source:HGNC Symbol;Acc:HGNC:30259]
13. MAP1LC3A ENSGALG00000038721 2230 0.994 - - - - 0.994 - - - - - microtubule associated protein 1 light chain 3 alpha
14. AEN ENSGALG00000044204 2633 0.994 - - - - 0.994 - - - - - apoptosis enhancing nuclease, transcript variant X1
15. DARS ENSGALG00000012355 2887 0.994 - - - - 0.994 - - - - - aspartyl-tRNA synthetase [Source:NCBI gene;Acc:424296]
16. CDR2L ENSGALG00000026295 4142 0.993 - - - - 0.993 - - - - - cerebellar degeneration related protein 2 like [Source:HGNC Symbol;Acc:HGNC:29999]
17. NOL12 ENSGALG00000012410 5658 0.993 - - - - 0.993 - - - - - nucleolar protein 12
18. FOCAD ENSGALG00000015071 3677 0.993 - - - - 0.993 - - - - - focadhesin [Source:NCBI gene;Acc:427233]
19. MTG1 ENSGALG00000003549 5032 0.992 - - - - 0.992 - - - - - mitochondrial ribosome associated GTPase 1 [Source:NCBI gene;Acc:791224]
20. RBM15B 5416 0.992 - - - - 0.992 - - - - - RNA binding motif protein 15B
21. PIK3CD ENSGALG00000002583 1036 0.992 - - - - 0.992 - - - - - phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta [Source:NCBI gene;Acc:419444]
22. CRIPT ENSGALG00000010014 4311 0.992 - - - - 0.992 - - - - - CXXC repeat containing interactor of PDZ3 domain [Source:NCBI gene;Acc:421412]
23. CLSPN ENSGALG00000002346 2590 0.992 - - - - 0.992 - - - - - claspin [Source:NCBI gene;Acc:428223]
24. ITPK1 ENSGALG00000034898 4212 0.992 - - - - 0.992 - - - - - inositol-tetrakisphosphate 1-kinase [Source:NCBI gene;Acc:423421]
25. NMT1 ENSGALG00000000857 5770 0.991 - - - - 0.991 - - - - - N-myristoyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:7857]
26. TIMM21 ENSGALG00000013709 3215 0.991 - - - - 0.991 - - - - - translocase of inner mitochondrial membrane 21 [Source:HGNC Symbol;Acc:HGNC:25010]
27. HABP4 ENSGALG00000012628 2894 0.99 - - - - 0.990 - - - - - hyaluronan binding protein 4 [Source:NCBI gene;Acc:395444]
28. TDRD3 ENSGALG00000016936 3412 0.989 - - - - 0.989 - - - - - tudor domain containing 3 [Source:NCBI gene;Acc:418823]
29. COPG2 ENSGALG00000008144 4542 0.989 - - - - 0.989 - - - - - coatomer protein complex subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:2237]
30. PAXIP1 ENSGALG00000036064 3120 0.989 - - - - 0.989 - - - - - PAX interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:8624]
31. GPALPP1 ENSGALG00000031567 4221 0.988 - - - - 0.988 - - - - - GPALPP motifs containing 1 [Source:NCBI gene;Acc:418842]
32. BTBD7 4136 0.988 - - - - 0.988 - - - - - BTB domain containing 7, transcript variant X2
33. ADSL ENSGALG00000012034 10280 0.988 - - - - 0.988 - - - - - adenylosuccinate lyase [Source:NCBI gene;Acc:396540]
34. SRP68 ENSGALG00000002062 7370 0.987 - - - - 0.987 - - - - - signal recognition particle 68 [Source:NCBI gene;Acc:417363]
35. GLB1L2 ENSGALG00000001604 4057 0.987 - - - - 0.987 - - - - - galactosidase beta 1 like 2 [Source:HGNC Symbol;Acc:HGNC:25129]
36. FBXW7 ENSGALG00000010103 5982 0.987 - - - - 0.987 - - - - - F-box and WD repeat domain containing 7 [Source:HGNC Symbol;Acc:HGNC:16712]
37. CNOT2 ENSGALG00000010042 7612 0.986 - - - - 0.986 - - - - - CCR4-NOT transcription complex subunit 2 [Source:NCBI gene;Acc:417851]
38. LFNG ENSGALG00000038515 5178 0.986 - - - - 0.986 - - - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395790]
39. MANF ENSGALG00000002362 7518 0.985 - - - - 0.985 - - - - - mesencephalic astrocyte derived neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:15461]
40. WSB2 ENSGALG00000008151 13246 0.985 - - - - 0.985 - - - - - WD repeat and SOCS box containing 2 [Source:HGNC Symbol;Acc:HGNC:19222]
41. AIP ENSGALG00000040247 4166 0.985 - - - - 0.985 - - - - - aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
42. KDM1A ENSGALG00000033469 20632 0.985 - - - - 0.985 - - - - - lysine demethylase 1A [Source:HGNC Symbol;Acc:HGNC:29079]
43. BRCC3 ENSGALG00000005383 4844 0.984 - - - - 0.984 - - - - - BRCA1/BRCA2-containing complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:24185]
44. FAM18B1 ENSGALG00000001335 5177 0.984 - - - - 0.984 - - - - - family with sequence similarity 18, member B1 [Source:NCBI gene;Acc:417324]
45. TXNDC9 ENSGALG00000032090 6804 0.984 - - - - 0.984 - - - - - thioredoxin domain containing 9 [Source:HGNC Symbol;Acc:HGNC:24110]
46. SOD2 ENSGALG00000011661 13178 0.983 - - - - 0.983 - - - - - superoxide dismutase 2 [Source:NCBI gene;Acc:374042]
47. TIA1 ENSGALG00000013879 16330 0.982 - - - - 0.982 - - - - - TIA1 cytotoxic granule associated RNA binding protein [Source:NCBI gene;Acc:771327]
48. B4GAL-T7 B4GAL-T7 12356 0.981 - - - - 0.981 - - - - -
49. MPPED1 ENSGALG00000014186 5726 0.981 - - - - 0.981 - - - - - metallophosphoesterase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:1306]
50. MRPL32 ENSGALG00000037258 6861 0.98 - - - - 0.980 - - - - - mitochondrial ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:14035]
51. TMEM167A ENSGALG00000027332 13862 0.98 - - - - 0.980 - - - - - transmembrane protein 167A [Source:NCBI gene;Acc:770790]
52. ZNF326 ENSGALG00000006113 15141 0.979 - - - - 0.979 - - - - - zinc finger protein 326 [Source:NCBI gene;Acc:424512]
53. DRG1 ENSGALG00000006921 10791 0.979 - - - - 0.979 - - - - - developmentally regulated GTP binding protein 1 [Source:NCBI gene;Acc:416962]
54. ANXA11 ENSGALG00000043826 5189 0.978 - - - - 0.978 - - - - - annexin A11 [Source:NCBI gene;Acc:423637]
55. TLK1 ENSGALG00000009569 5446 0.978 - - - - 0.978 - - - - - tousled like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
56. EIF4G3 ENSGALG00000010084 5881 0.977 - - - - 0.977 - - - - - eukaryotic translation initiation factor 4 gamma 3 [Source:HGNC Symbol;Acc:HGNC:3298]
57. SUGT1 ENSGALG00000016946 22881 0.977 - - - - 0.977 - - - - - SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:NCBI gene;Acc:418827]
58. SFRP2 ENSGALG00000009241 4716 0.977 - - - - 0.977 - - - - - secreted frizzled related protein 2 [Source:NCBI gene;Acc:395546]
59. CLCN7 ENSGALG00000030826 3173 0.976 - - - - - - - 0.976 - - chloride voltage-gated channel 7 [Source:NCBI gene;Acc:416656]
60. SH3GLB1 ENSGALG00000006284 12764 0.976 - - - - 0.976 - - - - - SH3 domain containing GRB2 like endophilin B1 [Source:NCBI gene;Acc:424522]
61. MST4 MST4 1931 0.976 - - - - - - - 0.976 - -
62. TPP2 ENSGALG00000016865 7509 0.975 - - - - 0.975 - - - - - tripeptidyl peptidase 2 [Source:HGNC Symbol;Acc:HGNC:12016]
63. gga-mir-1778 ENSGALG00000025181 8765 0.975 - - - - 0.975 - - - - - gga-mir-1778 [Source:miRBase;Acc:MI0007521]
64. OCIAD1 ENSGALG00000014081 12065 0.975 - - - - 0.975 - - - - - OCIA domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16074]
65. NF1 ENSGALG00000005660 1610 0.974 - - - - - - - 0.974 - - neurofibromin 1 [Source:HGNC Symbol;Acc:HGNC:7765]
66. MAP2K4 ENSGALG00000032178 5982 0.974 - - - - 0.974 - - - - - mitogen-activated protein kinase kinase 4 [Source:HGNC Symbol;Acc:HGNC:6844]
67. ENSGALG00000009863 ENSGALG00000009863 7375 0.973 - - - - - - - 0.973 - -
68. MCAT ENSGALG00000034275 4598 0.972 - - - - - - - 0.972 - - malonyl-CoA-acyl carrier protein transacylase [Source:HGNC Symbol;Acc:HGNC:29622]
69. DCUN1D2 ENSGALG00000029145 2414 0.972 - - - - - - - 0.972 - - defective in cullin neddylation 1 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:20328]
70. PPM1B ENSGALG00000030691 4513 0.972 - - - - - - - 0.972 - - protein phosphatase, Mg2+/Mn2+ dependent 1B [Source:NCBI gene;Acc:421404]
71. COPA ENSGALG00000009153 11618 0.971 - - - - 0.971 - - - - - coatomer protein complex subunit alpha [Source:NCBI gene;Acc:426906]
72. NUDT4 ENSGALG00000011285 2998 0.971 - - - - - - - 0.971 - - nudix hydrolase 4, transcript variant X5
73. LGALS1_1 ENSGALG00000012420 1560 0.971 - - - - - - - 0.971 - - galectin 1 [Source:NCBI gene;Acc:396491]
74. SUV420H1 SUV420H1 2361 0.971 - - - - - - - 0.971 - -
75. CMTM7 ENSGALG00000011488 1406 0.97 - - - - - - - 0.970 - - CKLF like MARVEL transmembrane domain containing 7 [Source:NCBI gene;Acc:420666]
76. MICU1 ENSGALG00000004372 1978 0.97 - - - - - - - 0.970 - - mitochondrial calcium uptake 1 [Source:HGNC Symbol;Acc:HGNC:1530]
77. SMPD2 ENSGALG00000033245 462 0.97 - - - - - - - 0.970 - - sphingomyelin phosphodiesterase 2 [Source:HGNC Symbol;Acc:HGNC:11121]
78. ATG2B ENSGALG00000042088 918 0.97 - - - - - - - 0.970 - - autophagy related 2B [Source:HGNC Symbol;Acc:HGNC:20187]
79. SURF1 ENSGALG00000033754 2130 0.969 - - - - - - - 0.969 - - SURF1, cytochrome c oxidase assembly factor [Source:NCBI gene;Acc:417157]
80. RPS6KA RPS6KA 6745 0.969 - - - - - - - 0.969 - -
81. STAU2 ENSGALG00000031390 2008 0.969 - - - - - - - 0.969 - - staufen double-stranded RNA binding protein 2 [Source:NCBI gene;Acc:420184]
82. GNPAT ENSGALG00000011163 4286 0.969 - - - - - - - 0.969 - - glyceronephosphate O-acyltransferase [Source:HGNC Symbol;Acc:HGNC:4416]
83. PARPBP ENSGALG00000012756 1895 0.969 - - - - - - - 0.969 - - PARP1 binding protein [Source:NCBI gene;Acc:418092]
84. RSU1 ENSGALG00000040891 12561 0.968 - - - - 0.968 - - - - - Ras suppressor protein 1 [Source:NCBI gene;Acc:420524]
85. TRAM1 ENSGALG00000041112 22876 0.968 - - - - 0.968 - - - - - translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
86. ZBTB24 ENSGALG00000015231 1384 0.968 - - - - - - - 0.968 - - zinc finger and BTB domain containing 24 [Source:HGNC Symbol;Acc:HGNC:21143]
87. HNMT ENSGALG00000012377 227 0.968 - - - - - - - 0.968 - - histamine N-methyltransferase [Source:NCBI gene;Acc:424298]
88. ASPM ENSGALG00000032398 12784 0.968 - - - - 0.968 - - - - - abnormal spindle microtubule assembly [Source:HGNC Symbol;Acc:HGNC:19048]
89. CHTF18 ENSGALG00000040157 2140 0.967 - - - - - - - 0.967 - - chromosome transmission fidelity factor 18 [Source:NCBI gene;Acc:416531]
90. ENSGALG00000017324 ENSGALG00000017324 8235 0.967 - - - - - - - 0.967 - -
91. ZNF652 ENSGALG00000001279 1188 0.967 - - - - - - - 0.967 - - zinc finger protein 652 [Source:HGNC Symbol;Acc:HGNC:29147]
92. OSR1 ENSGALG00000016473 1202 0.967 - - - - - - - 0.967 - - odd-skipped related transciption factor 1 [Source:HGNC Symbol;Acc:HGNC:8111]
93. STX16 ENSGALG00000007541 6458 0.967 - - - - - - - 0.967 - - syntaxin 16 [Source:NCBI gene;Acc:419315]
94. ZNF142 ENSGALG00000011393 2078 0.966 - - - - - - - 0.966 - - zinc finger protein 142 [Source:HGNC Symbol;Acc:HGNC:12927]
95. POLD3 ENSGALG00000017307 2136 0.966 - - - - - - - 0.966 - - DNA polymerase delta 3, accessory subunit [Source:NCBI gene;Acc:419053]
96. FAF1 ENSGALG00000010536 1522 0.966 - - - - - - - 0.966 - - Fas associated factor 1 [Source:HGNC Symbol;Acc:HGNC:3578]
97. SNTB1 ENSGALG00000034528 3907 0.966 - - - - - - - 0.966 - - syntrophin beta 1 [Source:NCBI gene;Acc:404774]
98. CLUAP1 ENSGALG00000030877 4269 0.966 - - - - - - - 0.966 - - clusterin associated protein 1 [Source:NCBI gene;Acc:426077]
99. TRAFD1 ENSGALG00000043208 1009 0.965 - - - - - - - 0.965 - - TRAF-type zinc finger domain containing 1 [Source:NCBI gene;Acc:416884]
100. DAB1 ENSGALG00000010857 1085 0.965 - - - - - - - 0.965 - - DAB1, reelin adaptor protein [Source:NCBI gene;Acc:374083]

There are 213 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA