Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Chicken data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for LSM5

Gene Name Gene ID Reads Annotation
LSM5 ENSGALG00000041625 22307 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420751]











Genes with expression patterns similar to LSM5

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LSM5 ENSGALG00000041625 22307 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420751]
2. ATG3 ENSGALG00000015204 11277 1.75 - - - - - - 0.878 0.872 - - autophagy related 3 [Source:NCBI gene;Acc:418369]
3. EHD3 ENSGALG00000009086 14407 1.737 - - - - - - 0.849 0.888 - - EH domain containing 3 [Source:NCBI gene;Acc:421306]
4. COMMD10 ENSGALG00000002308 7442 1.732 - - - - - - 0.834 0.898 - - COMM domain containing 10 [Source:NCBI gene;Acc:427388]
5. DRG1 ENSGALG00000006921 10791 1.691 - - - - - - 0.795 0.896 - - developmentally regulated GTP binding protein 1 [Source:NCBI gene;Acc:416962]
6. METAP2 ENSGALG00000011377 16311 1.674 - - - - - - 0.844 0.830 - - methionyl aminopeptidase 2 [Source:NCBI gene;Acc:417912]
7. GSTO1 ENSGALG00000008409 7561 1.662 - - - - 0.811 - 0.851 - - - glutathione S-transferase omega 1 [Source:NCBI gene;Acc:423881]
8. NEK6 ENSGALG00000001118 20333 1.658 - - - - 0.836 - 0.822 - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
9. PSMD3 ENSGALG00000033162 25615 1.649 - - - - 0.836 - 0.813 - - - proteasome 26S subunit, non-ATPase 3 [Source:NCBI gene;Acc:426133]
10. C14orf1 C14orf1 14289 1.635 - - - - - - 0.741 0.894 - -
11. MORF4L1 ENSGALG00000008146 29940 1.632 - - - - - - 0.750 0.882 - - mortality factor 4 like 1 [Source:NCBI gene;Acc:554283]
12. KRR1 ENSGALG00000010227 11783 1.627 - - - - - - 0.731 0.896 - - KRR1, small subunit processome component homolog [Source:NCBI gene;Acc:417863]
13. HARS ENSGALG00000035080 11602 1.625 - - - - 0.848 - 0.777 - - - histidyl-tRNA synthetase [Source:NCBI gene;Acc:416132]
14. LGALS1 ENSGALG00000012420 13993 1.623 - - - - 0.842 - 0.781 - - - galectin 1 [Source:NCBI gene;Acc:396491]
15. GABARAPL2 ENSGALG00000003208 9195 1.623 - - - - 0.782 - 0.841 - - - GABA type A receptor associated protein like 2 [Source:HGNC Symbol;Acc:HGNC:13291]
16. SPEN ENSGALG00000036932 9688 1.612 - - - - 0.832 - 0.780 - - - spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
17. TAF3 ENSGALG00000006731 15569 1.612 - - - - 0.835 - 0.777 - - - TATA-box binding protein associated factor 3 [Source:NCBI gene;Acc:419107]
18. LMAN2 ENSGALG00000033232 11740 1.612 - - - - 0.861 - 0.751 - - - lectin, mannose binding 2 [Source:HGNC Symbol;Acc:HGNC:16986]
19. HMGB2 ENSGALG00000010745 89235 1.611 - - - - 0.776 - 0.835 - - - high mobility group box 2 [Source:NCBI gene;Acc:396482]
20. CDCA7 ENSGALG00000040833 7484 1.611 - - - - 0.846 - 0.765 - - - cell division cycle associated 7 [Source:HGNC Symbol;Acc:HGNC:14628]
21. MED21 ENSGALG00000027435 5766 1.604 - - - - 0.862 - 0.742 - - - mediator complex subunit 21 [Source:HGNC Symbol;Acc:HGNC:11473]
22. EXOC8 ENSGALG00000043280 3596 1.602 - - - - - - 0.739 0.863 - - exocyst complex component 8 [Source:NCBI gene;Acc:421531]
23. CEP78 ENSGALG00000015179 5227 1.601 - - - - 0.807 - 0.794 - - - centrosomal protein 78 [Source:HGNC Symbol;Acc:HGNC:25740]
24. LOC426385 ENSGALG00000026301 2703 1.594 - - - - 0.867 - 0.727 - - - serine/threonine kinase 35-like, transcript variant X2
25. DLD ENSGALG00000007931 11011 1.594 - - - - 0.838 - 0.756 - - - dihydrolipoamide dehydrogenase [Source:NCBI gene;Acc:417699]
26. FYTTD1 ENSGALG00000007581 9341 1.586 - - - - - - 0.785 0.801 - - forty-two-three domain containing 1 [Source:NCBI gene;Acc:424921]
27. RABIF ENSGALG00000000436 6449 1.586 - - - - - - 0.769 0.817 - - RAB interacting factor [Source:HGNC Symbol;Acc:HGNC:9797]
28. RERE ENSGALG00000002232 8724 1.584 - - - - - - 0.743 0.841 - - arginine-glutamic acid dipeptide repeats [Source:HGNC Symbol;Acc:HGNC:9965]
29. RBBP4 ENSGALG00000003522 72455 1.58 - - - - 0.732 - 0.848 - - - RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
30. PRCC ENSGALG00000040696 9346 1.58 - - - - 0.825 - 0.755 - - - proline rich mitotic checkpoint control factor [Source:HGNC Symbol;Acc:HGNC:9343]
31. FOCAD ENSGALG00000015071 3677 1.571 - - - - - - 0.713 0.858 - - focadhesin [Source:NCBI gene;Acc:427233]
32. ZNF639 ENSGALG00000005944 6387 1.568 - - - - 0.848 - 0.720 - - - zinc finger protein 639 [Source:NCBI gene;Acc:425280]
33. CENPP ENSGALG00000004687 6707 1.555 - - - - 0.810 - 0.745 - - - centromere protein P [Source:NCBI gene;Acc:415952]
34. UMPS ENSGALG00000011770 11331 1.553 - - - - 0.743 - 0.810 - - - uridine monophosphate synthetase [Source:NCBI gene;Acc:424256]
35. PMPCA ENSGALG00000001950 6766 1.547 - - - - - - 0.785 0.762 - - peptidase, mitochondrial processing alpha subunit [Source:NCBI gene;Acc:417134]
36. GSPT1 15580 1.542 - - - - 0.758 - 0.784 - - - G1 to S phase transition 1, transcript variant X1
37. NUP88 ENSGALG00000032280 9847 1.538 - - - - 0.832 - 0.706 - - - nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]
38. VMA21 ENSGALG00000009065 6432 1.537 - - - - 0.821 - 0.716 - - - VMA21, vacuolar ATPase assembly factor [Source:NCBI gene;Acc:422385]
39. IP6K2 ENSGALG00000005701 12539 1.527 - - - - - - 0.787 0.740 - - inositol hexakisphosphate kinase 2 [Source:NCBI gene;Acc:416010]
40. RAD23B ENSGALG00000015540 10828 1.518 - - - - 0.801 - 0.717 - - - RAD23 homolog B, nucleotide excision repair protein [Source:HGNC Symbol;Acc:HGNC:9813]
41. RIOK3 ENSGALG00000015004 4249 1.508 - - - - - - 0.710 0.798 - - RIO kinase 3 [Source:HGNC Symbol;Acc:HGNC:11451]
42. CHMP5 ENSGALG00000013160 13347 1.494 - - - - 0.787 - 0.707 - - - charged multivesicular body protein 5 [Source:NCBI gene;Acc:420968]
43. UQCRH ENSGALG00000017380 55734 1.489 - - - - 0.717 - 0.772 - - - ubiquinol-cytochrome c reductase hinge protein [Source:NCBI gene;Acc:771939]
44. CUL3 ENSGALG00000005108 9571 1.465 - - - - - - 0.751 0.714 - - cullin 3 [Source:HGNC Symbol;Acc:HGNC:2553]
45. WASF1 ENSGALG00000015066 5628 1.451 - - - - - - 0.714 0.737 - - WAS protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12732]
46. CLTA ENSGALG00000015326 26867 0.964 - - - - 0.964 - - - - - clathrin light chain A [Source:NCBI gene;Acc:427284]
47. HOXA4 ENSGALG00000022622 22327 0.963 - - - - - - - 0.963 - - homeobox A4 [Source:NCBI gene;Acc:395307]
48. ERP29 ENSGALG00000023510 47100 0.946 - - - - - - - 0.946 - - endoplasmic reticulum protein 29 [Source:NCBI gene;Acc:416882]
49. TPRKB ENSGALG00000013018 8687 0.942 - - - - - - 0.942 - - - TP53RK binding protein [Source:HGNC Symbol;Acc:HGNC:24259]
50. GREB1 ENSGALG00000016455 12794 0.941 - - - - - - - 0.941 - - growth regulating estrogen receptor binding 1 [Source:HGNC Symbol;Acc:HGNC:24885]
51. MZT1 ENSGALG00000016932 9269 0.931 - - - - - - 0.931 - - - mitotic spindle organizing protein 1 [Source:NCBI gene;Acc:418822]
52. SYNCRIP ENSGALG00000015830 30555 0.928 - - - - 0.928 - - - - - synaptotagmin binding cytoplasmic RNA interacting protein [Source:NCBI gene;Acc:421831]
53. VBP1 VBP1 14482 0.924 - - - - - - 0.924 - - -
54. TUBB6 ENSGALG00000031275 17690 0.919 - - - - - - - 0.919 - - tubulin beta 6 class V [Source:NCBI gene;Acc:421037]
55. YWHAZ ENSGALG00000031387 84985 0.917 - - - - - - 0.917 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
56. LIX1 ENSGALG00000015290 7589 0.913 - - - - - - - 0.913 - - limb and CNS expressed 1 [Source:NCBI gene;Acc:374264]
57. ASUN ASUN 17129 0.913 - - - - - - 0.913 - - -
58. EBNA1BP2 ENSGALG00000009045 17453 0.912 - - - - - - 0.912 - - - EBNA1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:15531]
59. SIVA1 ENSGALG00000011619 15130 0.912 - - - - - - 0.912 - - - SIVA1 apoptosis inducing factor [Source:NCBI gene;Acc:423493]
60. INTS2 ENSGALG00000005269 6966 0.91 - - - - - - 0.910 - - - integrator complex subunit 2 [Source:NCBI gene;Acc:417640]
61. NDUFA9 ENSGALG00000017282 14358 0.907 - - - - - - - 0.907 - - NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
62. COBRA1 COBRA1 4600 0.904 - - - - - - 0.904 - - -
63. MAP3K7 ENSGALG00000015596 15164 0.904 - - - - - - 0.904 - - - mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]
64. ISY1 ENSGALG00000005012 7477 0.903 - - - - - - - 0.903 - - ISY1 splicing factor homolog
65. C1QBP ENSGALG00000001654 34814 0.901 - - - - - - 0.901 - - - complement C1q binding protein [Source:HGNC Symbol;Acc:HGNC:1243]
66. NOC4L ENSGALG00000002272 9644 0.9 - - - - - - 0.900 - - - nucleolar complex associated 4 homolog [Source:NCBI gene;Acc:416798]
67. RPF2 ENSGALG00000037087 12788 0.899 - - - - - - 0.899 - - - ribosome production factor 2 homolog [Source:HGNC Symbol;Acc:HGNC:20870]
68. NDUFA12 ENSGALG00000011325 19807 0.897 - - - - - - 0.897 - - - NADH:ubiquinone oxidoreductase subunit A12 [Source:NCBI gene;Acc:417907]
69. TXNDC17 ENSGALG00000027950 45004 0.897 - - - - - - 0.897 - - - thioredoxin domain containing 17 [Source:HGNC Symbol;Acc:HGNC:28218]
70. RUVBL1 ENSGALG00000005931 9379 0.895 - - - - - - 0.895 - - - RuvB like AAA ATPase 1 [Source:NCBI gene;Acc:416022]
71. LLPH ENSGALG00000019358 20976 0.894 - - - - - - 0.894 - - - LLP homolog, long-term synaptic facilitation [Source:NCBI gene;Acc:771027]
72. PARP1 ENSGALG00000009228 39433 0.892 - - - - - - 0.892 - - - poly (ADP-ribose) polymerase 1 [Source:NCBI gene;Acc:396199]
73. HERC2 ENSGALG00000016739 9900 0.892 - - - - - - 0.892 - - - HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:418682]
74. KLHDC4 ENSGALG00000037315 9828 0.891 - - - - - - 0.891 - - - kelch domain containing 4 [Source:NCBI gene;Acc:415831]
75. MRPL37 ENSGALG00000010761 10596 0.89 - - - - - - 0.890 - - - mitochondrial ribosomal protein L37 [Source:NCBI gene;Acc:772313]
76. EIF4A2 ENSGALG00000008684 58507 0.889 - - - - - - 0.889 - - - eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
77. GTF3A ENSGALG00000017098 9264 0.889 - - - - - - - 0.889 - - general transcription factor IIIA [Source:NCBI gene;Acc:418931]
78. GLRX3 ENSGALG00000010464 22578 0.889 - - - - - - 0.889 - - - glutaredoxin 3 [Source:NCBI gene;Acc:423968]
79. RANBP1 ENSGALG00000002107 17715 0.888 - - - - - - 0.888 - - - RAN binding protein 1 [Source:NCBI gene;Acc:416787]
80. PLRG1 ENSGALG00000009257 8613 0.887 - - - - - - 0.887 - - - pleiotropic regulator 1 [Source:HGNC Symbol;Acc:HGNC:9089]
81. PSMC3 ENSGALG00000008108 22922 0.884 - - - - - - 0.884 - - - proteasome 26S subunit, ATPase 3 [Source:NCBI gene;Acc:423182]
82. PREP2 PREP2 238 0.884 - - - - 0.884 - - - - -
83. PTK2B ENSGALG00000016564 406 0.884 - - - - 0.884 - - - - - protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
84. RAMP3 ENSGALG00000037246 1187 0.884 - - - - 0.884 - - - - - receptor activity modifying protein 3 [Source:NCBI gene;Acc:420786]
85. SMG7 ENSGALG00000004667 707 0.884 - - - - 0.884 - - - - - SMG7, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]
86. DGCR2 ENSGALG00000005891 8405 0.884 - - - - - - 0.884 - - - DiGeorge syndrome critical region gene 2 [Source:HGNC Symbol;Acc:HGNC:2845]
87. SDCBP ENSGALG00000015436 1228 0.884 - - - - 0.884 - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
88. PRDM4 ENSGALG00000012619 876 0.883 - - - - 0.883 - - - - - PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
89. ANKRD9 ENSGALG00000011376 525 0.882 - - - - 0.882 - - - - - ankyrin repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20096]
90. AIMP2 ENSGALG00000003400 12655 0.882 - - - - - - 0.882 - - - aminoacyl tRNA synthetase complex interacting multifunctional protein 2 [Source:HGNC Symbol;Acc:HGNC:20609]
91. XRN2 ENSGALG00000008372 22164 0.882 - - - - - - 0.882 - - - 5'-3' exoribonuclease 2 [Source:NCBI gene;Acc:421236]
92. TMEM70 ENSGALG00000033568 10720 0.882 - - - - - - 0.882 - - - transmembrane protein 70 [Source:NCBI gene;Acc:420188]
93. GTF2H1 ENSGALG00000042340 1553 0.881 - - - - 0.881 - - - - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
94. MED8 ENSGALG00000009993 3095 0.881 - - - - 0.881 - - - - - mediator complex subunit 8 [Source:NCBI gene;Acc:424565]
95. FCF1 ENSGALG00000010275 24928 0.88 - - - - - - 0.880 - - - FCF1, rRNA-processing protein [Source:HGNC Symbol;Acc:HGNC:20220]
96. YARS ENSGALG00000003563 11093 0.88 - - - - 0.880 - - - - - tyrosyl-tRNA synthetase [Source:NCBI gene;Acc:419666]
97. NDUFV1 ENSGALG00000042809 6222 0.879 - - - - 0.879 - - - - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:NCBI gene;Acc:430210]
98. CASK ENSGALG00000042400 8485 0.879 - - - - - - 0.879 - - - calcium/calmodulin dependent serine protein kinase [Source:HGNC Symbol;Acc:HGNC:1497]
99. KIF2C ENSGALG00000010120 8999 0.879 - - - - - - 0.879 - - - kinesin family member 2C, transcript variant X1
100. BRF1 ENSGALG00000011705 3406 0.879 - - - - 0.879 - - - - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]

There are 1027 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA