Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for LSM5

Gene Name Gene ID Reads Annotation
LSM5 ENSDARG00000071573 371 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-070822-23]










Genes with expression patterns similar to LSM5

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. LSM5 ENSDARG00000071573 371 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-070822-23]
2. syn1 ENSDARG00000060368, ENSDARG00000111164 397 2.379 - 0.849 - 0.813 - 0.717 - - - synapsin I [Source:ZFIN;Acc:ZDB-GENE-081105-93]
3. shank3b ENSDARG00000063054 148 2.348 - 0.735 - - - - 0.762 0.851 - SH3 and multiple ankyrin repeat domains 3b [Source:ZFIN;Acc:ZDB-GENE-041210-74]
4. kctd2 ENSDARG00000025875, ENSDARG00000114216 802 2.344 - 0.764 - 0.725 - 0.855 - - - potassium channel tetramerization domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060825-85]
5. dpp6b ENSDARG00000024744 234 1.746 - - - 0.882 - 0.864 - - - dipeptidyl-peptidase 6b [Source:ZFIN;Acc:ZDB-GENE-070705-88]
6. slc25a21 ENSDARG00000060564 344 1.737 - - - 0.802 - 0.935 - - - solute carrier family 25 (mitochondrial oxoadipate carrier), member 21 [Source:ZFIN;Acc:ZDB-GENE-060929-664]
7. dbpa ENSDARG00000063014 107 1.733 - 0.880 - - - 0.853 - - - D site albumin promoter binding protein a [Source:ZFIN;Acc:ZDB-GENE-060503-802]
8. CU638738.1 CU638738.1 131 1.729 - 0.850 - - - 0.879 - - -
9. ssna1 ENSDARG00000101300 403 1.727 - 0.930 - - - - 0.797 - - Sjogren syndrome nuclear autoantigen 1 [Source:ZFIN;Acc:ZDB-GENE-081104-255]
10. si:dkey-264b2.3 19 1.715 - 0.880 - - - 0.835 - - - si:dkey-264b2.3, transcript variant X2
11. hcfc1a ENSDARG00000015990, ENSDARG00000111404 59 1.715 - 0.853 - - - 0.862 - - - host cell factor C1a [Source:ZFIN;Acc:ZDB-GENE-030912-10]
12. TMEM128 552 1.714 - - - 0.823 - 0.891 - - - transmembrane protein 128
13. retsatl ENSDARG00000034989 41 1.708 - 0.856 - - - 0.852 - - - retinol saturase (all-trans-retinol 13,14-reductase) like [Source:ZFIN;Acc:ZDB-GENE-051113-252]
14. dph1 ENSDARG00000057973 191 1.706 - 0.911 - 0.795 - - - - - diphthamide biosynthesis 1 [Source:ZFIN;Acc:ZDB-GENE-050417-411]
15. espl1 ENSDARG00000075354 818 1.703 - - - - - 0.931 - 0.772 - extra spindle pole bodies like 1, separase [Source:ZFIN;Acc:ZDB-GENE-030131-5188]
16. tenm1 ENSDARG00000003403 148 1.703 - 0.901 - - - 0.802 - - - teneurin transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-060531-26]
17. CT030046.1 CT030046.1 190 1.703 - 0.868 - - - 0.835 - - -
18. samsn1a ENSDARG00000054543 28 1.699 - 0.868 - - - - 0.831 - - SAM domain, SH3 domain and nuclear localisation signals 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8639]
19. PEG3_40 PEG3_40 186 1.696 - 0.834 - - - 0.862 - - -
20. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 1.695 - 0.845 - - - 0.850 - - - protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
21. CR388231.1 ENSDARG00000098710 153 1.694 - 0.854 - - - 0.840 - - -
22. kcnc1a ENSDARG00000051852 317 1.691 - 0.789 - - - - - 0.902 - potassium voltage-gated channel, Shaw-related subfamily, member 1a [Source:ZFIN;Acc:ZDB-GENE-061220-10]
23. stap2a ENSDARG00000092810 591 1.691 - - - 0.848 - 0.843 - - - signal transducing adaptor family member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5383]
24. BX088524.2 ENSDARG00000103268 564 1.69 - - - - - 0.824 - 0.866 -
25. plk2b ENSDARG00000019130, ENSDARG00000111402 328 1.689 - - - 0.841 - 0.848 - - - polo-like kinase 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070720-17]
26. msxe msxe 362 1.678 - - - 0.828 - 0.850 - - -
27. nexmifb ENSDARG00000029296 416 1.677 - - - 0.815 - 0.862 - - - neurite extension and migration factor b [Source:ZFIN;Acc:ZDB-GENE-140106-18]
28. jam2a ENSDARG00000058996 701 1.675 - - - - - - 0.882 - 0.793 junctional adhesion molecule 2a [Source:ZFIN;Acc:ZDB-GENE-031204-3]
29. naif1 ENSDARG00000062753 176 1.665 - 0.796 - - - 0.869 - - - nuclear apoptosis inducing factor 1 [Source:ZFIN;Acc:ZDB-GENE-081104-236]
30. mntb ENSDARG00000073988 1023 1.66 - 0.809 - 0.851 - - - - - MAX network transcriptional repressor b [Source:ZFIN;Acc:ZDB-GENE-070820-8]
31. chfr ENSDARG00000075347 664 1.658 - 0.893 - 0.765 - - - - - checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-030131-3522]
32. zgc:171566 ENSDARG00000105118 340 1.658 - - - - - 0.897 0.761 - - zgc:171566 [Source:ZFIN;Acc:ZDB-GENE-050309-193]
33. elk1 ENSDARG00000078066 414 1.652 - - - 0.798 - 0.854 - - - ELK1, member of ETS oncogene family [Source:ZFIN;Acc:ZDB-GENE-090529-5]
34. ttyh3b ENSDARG00000007678 537 1.651 - - - - - 0.895 0.756 - - tweety family member 3b [Source:ZFIN;Acc:ZDB-GENE-051120-105]
35. EXO5 ENSDARG00000042727, ENSDARG00000111772 282 1.649 - 0.749 - - - 0.900 - - - exonuclease 5 [Source:ZFIN;Acc:ZDB-GENE-051113-108]
36. GPR17 ENSDARG00000062030 713 1.647 - 0.925 - - - - 0.722 - - G protein-coupled receptor 17 [Source:ZFIN;Acc:ZDB-GENE-100922-133]
37. sos2 ENSDARG00000060506 769 1.647 - - - 0.882 - 0.765 - - - son of sevenless homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-090319-5]
38. C8H1orf194 C8H1orf194 111 1.642 - - - 0.826 - 0.816 - - -
39. si:ch211-282k23.2 ENSDARG00000093591 447 1.64 - - - - - 0.809 - 0.831 - si:ch211-282k23.2 [Source:ZFIN;Acc:ZDB-GENE-050420-314]
40. si:dkey-30c15.12 ENSDARG00000058546 12 1.639 - 0.880 - - 0.759 - - - - si:dkey-30c15.12 [Source:ZFIN;Acc:ZDB-GENE-060503-920]
41. si:ch1073-174d20.2 ENSDARG00000079651 171 1.638 - 0.795 - - - - - 0.843 - si:ch1073-174d20.2 [Source:ZFIN;Acc:ZDB-GENE-121214-51]
42. fabp11a_1 ENSDARG00000017299 387 1.638 - 0.724 - - - 0.914 - - - fatty acid binding protein 11a [Source:ZFIN;Acc:ZDB-GENE-040912-132]
43. si:ch211-113e8.10 ENSDARG00000079631 498 1.636 - - - 0.811 - 0.825 - - - si:ch211-113e8.10 [Source:ZFIN;Acc:ZDB-GENE-090313-11]
44. HPDL ENSDARG00000113721 264 1.635 - - - - - 0.832 0.803 - - 4-hydroxyphenylpyruvate dioxygenase like [Source:HGNC Symbol;Acc:HGNC:28242]
45. med25 ENSDARG00000038005, ENSDARG00000115713 1305 1.633 - 0.737 - - - 0.896 - - - mediator complex subunit 25 [Source:ZFIN;Acc:ZDB-GENE-040426-2850]
46. rbp7b ENSDARG00000070486, ENSDARG00000111858 449 1.633 - - - - - 0.854 0.779 - - retinol binding protein 7b, cellular [Source:ZFIN;Acc:ZDB-GENE-081022-134]
47. traip ENSDARG00000011262 410 1.631 - 0.889 - - - 0.742 - - - TRAF-interacting protein [Source:ZFIN;Acc:ZDB-GENE-040801-30]
48. XKR7 ENSDARG00000026333 175 1.626 - - - - - 0.873 - - 0.753 XK, Kell blood group complex subunit-related family, member 7 [Source:ZFIN;Acc:ZDB-GENE-051113-336]
49. EML6 250 1.625 - 0.848 - - - 0.777 - - - echinoderm microtubule associated protein like 6
50. tmprss13b ENSDARG00000077573 47 1.622 - - - - - - - 0.848 0.774 transmembrane serine protease 13b [Source:ZFIN;Acc:ZDB-GENE-090309-2]
51. trim35-39 ENSDARG00000071241 464 1.621 - 0.792 - - - - - 0.829 - tripartite motif containing 35-39 [Source:ZFIN;Acc:ZDB-GENE-080219-13]
52. tmem201 ENSDARG00000077307 453 1.621 - - - - - 0.844 - 0.777 - transmembrane protein 201 [Source:ZFIN;Acc:ZDB-GENE-070410-61]
53. sgta ENSDARG00000019941 238 1.62 - - - - - 0.774 - 0.846 - small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha [Source:ZFIN;Acc:ZDB-GENE-030131-8811]
54. ints3 ENSDARG00000016811 339 1.615 - 0.791 - - - 0.824 - - - integrator complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-060503-634]
55. CABZ01066957.1 CABZ01066957.1 161 1.603 - 0.865 - - - 0.738 - - -
56. CR848664.3 CR848664.3 183 1.603 - - - - - - 0.757 0.846 -
57. ercc2 ENSDARG00000021985 678 1.601 - - - - - 0.792 - 0.809 - excision repair cross-complementation group 2 [Source:ZFIN;Acc:ZDB-GENE-040426-997]
58. CAPN15 ENSDARG00000060600 248 1.6 - - - 0.833 - 0.767 - - - calpain 15 [Source:ZFIN;Acc:ZDB-GENE-140106-70]
59. ndst3 ENSDARG00000041776 605 1.596 - 0.759 - - - 0.837 - - - N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 [Source:ZFIN;Acc:ZDB-GENE-090312-199]
60. BX927294.1 BX927294.1 361 1.595 - - - 0.791 - 0.804 - - -
61. zgc:109744 ENSDARG00000070800 262 1.595 - - - - - 0.745 - 0.850 - zgc:109744 [Source:ZFIN;Acc:ZDB-GENE-050809-146]
62. enoph1 ENSDARG00000026198, ENSDARG00000111634, ENSDARG00000114318 1305 1.594 - - - - - 0.807 0.787 - - enolase-phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-040704-73]
63. rfwd2 740 1.594 - - - 0.766 - - - 0.828 - ring finger and WD repeat domain 2, transcript variant X1
64. CT573468.1 CT573468.1 283 1.594 - - - - - - 0.745 0.849 -
65. CPNE8_1 CPNE8_1 140 1.593 - - - - - - 0.728 0.865 -
66. tfip11 ENSDARG00000056932 479 1.592 - - - 0.756 - - - 0.836 - tuftelin interacting protein 11 [Source:ZFIN;Acc:ZDB-GENE-040718-479]
67. ubxn2a ENSDARG00000087180 152 1.586 - 0.847 - - - 0.739 - - - UBX domain protein 2A [Source:ZFIN;Acc:ZDB-GENE-110411-202]
68. slc44a5b ENSDARG00000057419 534 1.583 - - - 0.807 - 0.776 - - - solute carrier family 44, member 5b [Source:ZFIN;Acc:ZDB-GENE-081105-4]
69. nfybb ENSDARG00000045611, ENSDARG00000110926 350 1.583 - - - - - 0.871 - - 0.712 nuclear transcription factor Y, beta b [Source:ZFIN;Acc:ZDB-GENE-050306-25]
70. vps72 1164 1.582 - 0.766 - - - 0.816 - - - vacuolar protein sorting 72 homolog (S. cerevisiae)
71. rhof ENSDARG00000054389, ENSDARG00000111798 15 1.58 - 0.880 - - - - 0.700 - - ras homolog family member F [Source:ZFIN;Acc:ZDB-GENE-050522-280]
72. wbp1la ENSDARG00000013245 143 1.578 - - - - - - 0.831 0.747 - WW domain binding protein 1-like a [Source:ZFIN;Acc:ZDB-GENE-030131-1961]
73. foxi1 ENSDARG00000104566 176 1.577 - 0.868 - - - - - 0.709 - forkhead box i1 [Source:ZFIN;Acc:ZDB-GENE-030505-1]
74. creg2 ENSDARG00000000666 643 1.577 - - - 0.722 - - - 0.855 - cellular repressor of E1A-stimulated genes 2 [Source:ZFIN;Acc:ZDB-GENE-041114-173]
75. fgfrl1b ENSDARG00000052556, ENSDARG00000110034 240 1.575 - - - - - 0.871 0.704 - - fibroblast growth factor receptor like 1b [Source:ZFIN;Acc:ZDB-GENE-050201-3]
76. lpar2a ENSDARG00000042338 285 1.573 - - - - - 0.764 0.809 - - lysophosphatidic acid receptor 2a [Source:ZFIN;Acc:ZDB-GENE-040801-97]
77. bag4 ENSDARG00000043179 568 1.571 - - - - - 0.835 0.736 - - BCL2 associated athanogene 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5484]
78. scaper ENSDARG00000023104 491 1.57 - - - 0.732 - - - 0.838 - S-phase cyclin A-associated protein in the ER [Source:ZFIN;Acc:ZDB-GENE-060303-5]
79. nsmce1 ENSDARG00000098780 289 1.569 - 0.760 - - - 0.809 - - - NSE1 homolog, SMC5-SMC6 complex component [Source:ZFIN;Acc:ZDB-GENE-040718-289]
80. KIF21A_1 KIF21A_1 237 1.569 - 0.778 - - - 0.791 - - -
81. cldn11a ENSDARG00000020031 284 1.568 - 0.868 - - - - 0.700 - - claudin 11a [Source:ZFIN;Acc:ZDB-GENE-040718-369]
82. nrp1b ENSDARG00000027290 170 1.567 - - - - - 0.851 0.716 - - neuropilin 1b [Source:ZFIN;Acc:ZDB-GENE-040611-1]
83. rad21b ENSDARG00000035655 87 1.564 - - - - - 0.856 0.708 - - RAD21 cohesin complex component b [Source:ZFIN;Acc:ZDB-GENE-060503-223]
84. angptl7 ENSDARG00000027582, ENSDARG00000110344 1574 1.562 - - - 0.827 - - 0.735 - - angiopoietin-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-175]
85. atg12 ENSDARG00000069545, ENSDARG00000113990 580 1.561 - - - 0.739 - 0.822 - - - ATG12 autophagy related 12 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-071205-7]
86. KBTBD2 ENSDARG00000087226 707 1.56 - 0.731 - 0.829 - - - - - kelch repeat and BTB (POZ) domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060929-1262]
87. CT955984.1 ENSDARG00000113577 1482 1.56 - 0.700 - - - 0.860 - - -
88. SACM1L SACM1L 416 1.559 - - - 0.800 - 0.759 - - -
89. CR759921.2 CR759921.2 583 1.559 - 0.839 - - - 0.720 - - -
90. kcnip3b ENSDARG00000017880, ENSDARG00000109763 105 1.554 - - - - - 0.828 0.726 - - Kv channel interacting protein 3b, calsenilin [Source:ZFIN;Acc:ZDB-GENE-040426-1752]
91. pdk1 ENSDARG00000013128 526 1.554 - - - 0.704 - - - 0.850 - pyruvate dehydrogenase kinase, isozyme 1 [Source:ZFIN;Acc:ZDB-GENE-091204-402]
92. si:dkey-270b7.1 si:dkey-270b7.1 83 1.554 - 0.705 - - - 0.849 - - -
93. nfkb2 ENSDARG00000038687, ENSDARG00000112821 468 1.547 - 0.770 - - - 0.777 - - - nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) [Source:ZFIN;Acc:ZDB-GENE-030131-6701]
94. PLEKHM3 ENSDARG00000030633 496 1.546 - - - 0.735 - 0.811 - - - pleckstrin homology domain containing, family M, member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-382]
95. mn1b ENSDARG00000079248 882 1.545 - - - 0.732 - 0.813 - - - meningioma 1b [Source:ZFIN;Acc:ZDB-GENE-080917-23]
96. mmp15a ENSDARG00000051962 932 1.542 - 0.760 - - - - - 0.782 - matrix metallopeptidase 15a [Source:ZFIN;Acc:ZDB-GENE-070817-4]
97. sort1a ENSDARG00000029402, ENSDARG00000117178 1480 1.542 0.806 - - - - - 0.736 - - sortilin 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2329]
98. she ENSDARG00000087956 941 1.541 - 0.757 - - - - 0.784 - - Src homology 2 domain containing E [Source:ZFIN;Acc:ZDB-GENE-090915-6]
99. CU929225.1 CU929225.1 104 1.539 - 0.839 - - - - 0.700 - -
100. ADRA1B ADRA1B 319 1.539 - - - - - 0.831 - - 0.708

There are 2418 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA