Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LSM4

Gene Name Gene ID Reads Annotation
LSM4 ENSGALG00000003385 4050 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:17259]











Genes with expression patterns similar to LSM4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LSM4 ENSGALG00000003385 4050 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:17259]
2. CPT1A ENSGALG00000007077 3199 1.494 - - 0.714 - - - 0.780 - - - carnitine palmitoyltransferase 1A [Source:NCBI gene;Acc:423118]
3. GNMT ENSGALG00000043290 3288 0.898 - - 0.898 - - - - - - - glycine N-methyltransferase [Source:HGNC Symbol;Acc:HGNC:4415]
4. USP40 ENSGALG00000004228 1137 0.893 - - 0.893 - - - - - - - ubiquitin specific peptidase 40 [Source:NCBI gene;Acc:100859211]
5. PI4K2A ENSGALG00000006143 1863 0.892 - - 0.892 - - - - - - - phosphatidylinositol 4-kinase type 2 alpha
6. CDK9 ENSGALG00000035576 3659 0.891 - - 0.891 - - - - - - - cyclin dependent kinase 9 [Source:NCBI gene;Acc:417226]
7. LRP2 ENSGALG00000010858 363 0.888 - - 0.888 - - - - - - - LDL receptor related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
8. SORCS1 ENSGALG00000008465 468 0.886 - - 0.886 - - - - - - - sortilin related VPS10 domain containing receptor 1 [Source:HGNC Symbol;Acc:HGNC:16697]
9. AXIN1 ENSGALG00000029402 2802 0.885 - - 0.885 - - - - - - - axin 1 [Source:NCBI gene;Acc:395786]
10. PFKFB3 ENSGALG00000040369 2119 0.884 - - 0.884 - - - - - - - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Source:HGNC Symbol;Acc:HGNC:8874]
11. CASP1 ENSGALG00000001049 1067 0.882 - - 0.882 - - - - - - - caspase 1, transcript variant X2
12. MSRA ENSGALG00000028032 2607 0.877 - - 0.877 - - - - - - - methionine sulfoxide reductase A [Source:HGNC Symbol;Acc:HGNC:7377]
13. ITPR1 ENSGALG00000008294 1226 0.875 - - 0.875 - - - - - - - inositol 1,4,5-trisphosphate receptor type 1 [Source:NCBI gene;Acc:395412]
14. HYI ENSGALG00000033943 2489 0.875 - - 0.875 - - - - - - - hydroxypyruvate isomerase (putative) [Source:NCBI gene;Acc:424567]
15. ZNF276 ENSGALG00000000513 2410 0.875 - - 0.875 - - - - - - - zinc finger protein 276 [Source:HGNC Symbol;Acc:HGNC:23330]
16. FRMD3 ENSGALG00000012577 999 0.874 - - 0.874 - - - - - - - FERM domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24125]
17. TRIM37 ENSGALG00000005084 4036 0.874 - - 0.874 - - - - - - - tripartite motif containing 37 [Source:NCBI gene;Acc:417628]
18. ATG10 ENSGALG00000027714 1100 0.873 - - 0.873 - - - - - - - autophagy related 10 [Source:HGNC Symbol;Acc:HGNC:20315]
19. ACOT9 ENSGALG00000016351 330 0.873 - - 0.873 - - - - - - - acyl-CoA thioesterase 9 [Source:NCBI gene;Acc:418600]
20. MYO18A ENSGALG00000003741 1023 0.872 - - 0.872 - - - - - - - myosin XVIIIA [Source:HGNC Symbol;Acc:HGNC:31104]
21. TMEM128 ENSGALG00000014992 6567 0.872 - - 0.872 - - - - - - - transmembrane protein 128 [Source:NCBI gene;Acc:422845]
22. CCDC25 ENSGALG00000016586 351 0.871 - - 0.871 - - - - - - - coiled-coil domain containing 25 [Source:HGNC Symbol;Acc:HGNC:25591]
23. PSMC5 ENSGALG00000000349 21346 0.871 - - 0.871 - - - - - - - proteasome 26S subunit, ATPase 5 [Source:NCBI gene;Acc:428274]
24. AGRN ENSGALG00000039193 8135 0.87 - - 0.870 - - - - - - - agrin [Source:NCBI gene;Acc:396538]
25. FOPNL ENSGALG00000006532 2922 0.87 - - 0.870 - - - - - - - FGFR1OP N-terminal like [Source:NCBI gene;Acc:416598]
26. IP6K1 ENSGALG00000002510 827 0.869 - - 0.869 - - - - - - - inositol hexakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:18360]
27. MT1 MT1 218 0.868 - - 0.868 - - - - - - -
28. LZIC ENSGALG00000002616 9052 0.868 - - 0.868 - - - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
29. OSGEPL1 ENSGALG00000037727 1879 0.867 - - 0.867 - - - - - - - O-sialoglycoprotein endopeptidase like 1 [Source:HGNC Symbol;Acc:HGNC:23075]
30. LGALS3 ENSGALG00000012173 3306 0.867 - - 0.867 - - - - - - - galectin 3 [Source:NCBI gene;Acc:373917]
31. VRTN ENSGALG00000010232 692 0.867 - - 0.867 - - - - - - - vertebrae development associated [Source:HGNC Symbol;Acc:HGNC:20223]
32. PLEKHG5 ENSGALG00000027476 42 0.866 - - 0.866 - - - - - - - pleckstrin homology and RhoGEF domain containing G5 [Source:HGNC Symbol;Acc:HGNC:29105]
33. GRIK3 ENSGALG00000002098 111 0.865 - - 0.865 - - - - - - - glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
34. POMC ENSGALG00000016600 99 0.865 - - 0.865 - - - - - - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
35. KIAA0195 KIAA0195 48 0.865 - - 0.865 - - - - - - -
36. ZEB2 ENSGALG00000040465 315 0.864 - - 0.864 - - - - - - - Gallus gallus zinc finger E-box binding homeobox 2 (ZEB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001318466]
37. NCAPD3 ENSGALG00000001491 221 0.864 - - 0.864 - - - - - - - non-SMC condensin II complex subunit D3, transcript variant X3
38. RHOC ENSGALG00000001569 53 0.864 - - 0.864 - - - - - - - ras homolog family member C [Source:NCBI gene;Acc:395869]
39. PKP4 ENSGALG00000012561 3087 0.863 - - 0.863 - - - - - - - plakophilin 4 [Source:NCBI gene;Acc:424328]
40. ENSGALG00000023180 ENSGALG00000023180 83 0.863 - - 0.863 - - - - - - -
41. MAK16 ENSGALG00000001663 7455 0.863 - - 0.863 - - - - - - - MAK16 homolog [Source:HGNC Symbol;Acc:HGNC:13703]
42. SCRN1 ENSGALG00000011176 3783 0.862 - - 0.862 - - - - - - - secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
43. MGMT ENSGALG00000042949 53 0.862 - - 0.862 - - - - - - - O-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]
44. TSEN2 ENSGALG00000004981 1929 0.861 - - 0.861 - - - - - - - tRNA splicing endonuclease subunit 2 [Source:NCBI gene;Acc:415965]
45. AP3M1 ENSGALG00000005070 712 0.86 - - 0.860 - - - - - - - adaptor related protein complex 3 subunit mu 1 [Source:NCBI gene;Acc:423736]
46. BCCIP ENSGALG00000006617 13291 0.859 - - 0.859 - - - - - - - BRCA2 and CDKN1A interacting protein [Source:HGNC Symbol;Acc:HGNC:978]
47. RUFY2 1442 0.859 - - 0.859 - - - - - - - RUN and FYVE domain containing 2, transcript variant X1
48. TMEM97 ENSGALG00000005702 2037 0.859 - - 0.859 - - - - - - - transmembrane protein 97 [Source:HGNC Symbol;Acc:HGNC:28106]
49. DSCR3 3583 0.859 - - 0.859 - - - - - - - DSCR3 arrestin fold containing, transcript variant X1
50. ADAMTS2 ENSGALG00000032974 141 0.859 - - 0.859 - - - - - - - ADAM metallopeptidase with thrombospondin type 1 motif 2 [Source:HGNC Symbol;Acc:HGNC:218]
51. MAN1A1 ENSGALG00000014878 1061 0.859 - - 0.859 - - - - - - - mannosidase alpha class 1A member 1 [Source:HGNC Symbol;Acc:HGNC:6821]
52. GOLGA2 ENSGALG00000004881 677 0.858 - - 0.858 - - - - - - - golgin A2, transcript variant X7
53. INTS9 ENSGALG00000016631 742 0.858 - - 0.858 - - - - - - - integrator complex subunit 9 [Source:NCBI gene;Acc:422023]
54. ENSGALG00000028359 ENSGALG00000028359 479 0.858 - - 0.858 - - - - - - -
55. TMEM38B ENSGALG00000027472 2465 0.857 - - 0.857 - - - - - - - transmembrane protein 38B [Source:HGNC Symbol;Acc:HGNC:25535]
56. EIF2AK2 ENSGALG00000010560 749 0.857 - - 0.857 - - - - - - - eukaryotic translation initiation factor 2 alpha kinase 2 [Source:NCBI gene;Acc:395147]
57. WDR11 ENSGALG00000035013 3393 0.856 - - 0.856 - - - - - - - WD repeat domain 11 [Source:HGNC Symbol;Acc:HGNC:13831]
58. LARS2 ENSGALG00000036309 2624 0.855 - - 0.855 - - - - - - - leucyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:17095]
59. BMP2 ENSGALG00000029301 379 0.854 - - 0.854 - - - - - - - bone morphogenetic protein 2 [Source:NCBI gene;Acc:378779]
60. ISCU ENSGALG00000004869 6852 0.853 - - 0.853 - - - - - - - iron-sulfur cluster assembly enzyme [Source:HGNC Symbol;Acc:HGNC:29882]
61. ATP2B2 ENSGALG00000030908 584 0.852 - - 0.852 - - - - - - - ATPase plasma membrane Ca2+ transporting 2 [Source:HGNC Symbol;Acc:HGNC:815]
62. FAM134A 1600 0.851 - - 0.851 - - - - - - - family with sequence similarity 134 member A
63. RPUSD1 ENSGALG00000005315 651 0.851 - - 0.851 - - - - - - - RNA pseudouridylate synthase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14173]
64. TXNDC12 ENSGALG00000010569 13822 0.851 - - 0.851 - - - - - - - thioredoxin domain containing 12 [Source:NCBI gene;Acc:772208]
65. FBXO34 ENSGALG00000032563 656 0.85 - - 0.850 - - - - - - - F-box protein 34 [Source:NCBI gene;Acc:423554]
66. XPC ENSGALG00000006357 2484 0.85 - - 0.850 - - - - - - - XPC complex subunit, DNA damage recognition and repair factor [Source:HGNC Symbol;Acc:HGNC:12816]
67. FAM110D ENSGALG00000046085 2193 0.849 - - 0.849 - - - - - - - family with sequence similarity 110 member D [Source:HGNC Symbol;Acc:HGNC:25860]
68. FBF1 ENSGALG00000002179 1738 0.849 - - 0.849 - - - - - - - Fas binding factor 1 [Source:NCBI gene;Acc:770159]
69. METTL13 ENSGALG00000003206 1503 0.849 - - 0.849 - - - - - - - methyltransferase like 13 [Source:HGNC Symbol;Acc:HGNC:24248]
70. CCT8 ENSGALG00000015821 12161 0.847 - - 0.847 - - - - - - - chaperonin containing TCP1 subunit 8 [Source:NCBI gene;Acc:418486]
71. Sep-02 Sep-02 206 0.845 - - 0.845 - - - - - - -
72. FURIN ENSGALG00000008341 2609 0.844 - - 0.844 - - - - - - - furin, paired basic amino acid cleaving enzyme [Source:NCBI gene;Acc:395457]
73. SULT2B1L1 ENSGALG00000023472 569 0.844 - - 0.844 - - - - - - - sulfotransferase family cytosolic 2B member 1-like 1
74. PIH1D3 ENSGALG00000004870 1365 0.844 - - 0.844 - - - - - - - PIH1 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28570]
75. C19H17ORF85 C19H17ORF85 2538 0.843 - - 0.843 - - - - - - -
76. RFNG ENSGALG00000002841 1643 0.843 - - 0.843 - - - - - - - RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395789]
77. TGIF1 ENSGALG00000014795 2378 0.843 - - 0.843 - - - - - - - TGFB induced factor homeobox 1 [Source:NCBI gene;Acc:396339]
78. DPH3 3317 0.842 - - 0.842 - - - - - - - diphthamide biosynthesis 3
79. LRR1 ENSGALG00000012230 1062 0.842 - - 0.842 - - - - - - - leucine rich repeat protein 1 [Source:HGNC Symbol;Acc:HGNC:19742]
80. ENTPD5 ENSGALG00000010202 69 0.842 - - 0.842 - - - - - - - ectonucleoside triphosphate diphosphohydrolase 5 [Source:HGNC Symbol;Acc:HGNC:3367]
81. SDCBP ENSGALG00000015436 1228 0.842 - - 0.842 - - - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
82. CXorf30 CXorf30 172 0.842 - - 0.842 - - - - - - -
83. MPG ENSGALG00000028691 1874 0.84 - - 0.840 - - - - - - - N-methylpurine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:7211]
84. C5orf30 ENSGALG00000027512 1721 0.84 - - 0.840 - - - - - - - chromosome 5 open reading frame 30 [Source:HGNC Symbol;Acc:HGNC:25052]
85. TLK2 ENSGALG00000000410 4690 0.84 - - 0.840 - - - - - - - tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
86. YLPM1 671 0.84 - - 0.840 - - - - - - - YLP motif containing 1
87. KIAA0930 ENSGALG00000014226 1243 0.839 - - 0.839 - - - - - - - KIAA0930 [Source:HGNC Symbol;Acc:HGNC:1314]
88. TFAP2B ENSGALG00000016680 829 0.839 - - 0.839 - - - - - - - transcription factor AP-2 beta [Source:NCBI gene;Acc:395713]
89. WDR89 ENSGALG00000011827 1481 0.838 - - 0.838 - - - - - - - WD repeat domain 89 [Source:NCBI gene;Acc:423510]
90. DDX18 ENSGALG00000012147 12463 0.838 - - 0.838 - - - - - - - DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]
91. GBGT1 ENSGALG00000003340 399 0.838 - - 0.838 - - - - - - - globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) [Source:NCBI gene;Acc:417163]
92. AMMECR1L ENSGALG00000026728 2134 0.837 - - 0.837 - - - - - - - AMMECR1 like [Source:HGNC Symbol;Acc:HGNC:28658]
93. EPB41 ENSGALG00000001329 787 0.837 - - 0.837 - - - - - - - erythrocyte membrane protein band 4.1 [Source:NCBI gene;Acc:396493]
94. NSG1 ENSGALG00000015010 5829 0.836 - - 0.836 - - - - - - - neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
95. GBAS 18453 0.834 - - 0.834 - - - - - - - glioblastoma amplified sequence
96. SLC4A4 ENSGALG00000031105 534 0.833 - - 0.833 - - - - - - - solute carrier family 4 member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
97. JMJD6 ENSGALG00000001802 5169 0.833 - - 0.833 - - - - - - - jumonji domain containing 6 [Source:NCBI gene;Acc:417355]
98. ZFAND2B ENSGALG00000029226 4107 0.831 - - 0.831 - - - - - - - zinc finger AN1-type containing 2B [Source:HGNC Symbol;Acc:HGNC:25206]
99. SH3GLB1 ENSGALG00000006284 12764 0.83 - - 0.830 - - - - - - - SH3 domain containing GRB2 like endophilin B1 [Source:NCBI gene;Acc:424522]
100. DHCR7 ENSGALG00000004106 4731 0.83 - - 0.830 - - - - - - - 7-dehydrocholesterol reductase [Source:NCBI gene;Acc:422982]

There are 232 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA