Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LSM1

Gene Name Gene ID Reads Annotation
LSM1 ENSGALG00000003245 4701 LSM1 homolog, mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:20472]











Genes with expression patterns similar to LSM1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LSM1 ENSGALG00000003245 4701 9 1.000 1.000 1.000 1.000 1.000 - 1.000 1.000 1.000 1.000 LSM1 homolog, mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:20472]
2. DAK DAK 13208 1.72 - - 0.734 - - - - 0.986 - -
3. EIF2B1 ENSGALG00000003259 9491 1.666 - - - - - - 0.728 0.938 - - eukaryotic translation initiation factor 2B subunit alpha [Source:HGNC Symbol;Acc:HGNC:3257]
4. C1orf174 ENSGALG00000000975 4947 1.612 - - - - - - 0.767 0.845 - - chromosome 1 open reading frame 174 [Source:HGNC Symbol;Acc:HGNC:27915]
5. ASUN ASUN 17129 1.531 - - - - - - 0.739 0.792 - -
6. PSMB2 ENSGALG00000026421 51885 1.465 - - 0.745 - - - 0.720 - - - proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
7. CDC45 ENSGALG00000001616 8432 1.451 - - 0.723 - - - 0.728 - - - cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]
8. AHCTF1 ENSGALG00000010630 4809 1.442 - - 0.728 - - - 0.714 - - - AT-hook containing transcription factor 1 [Source:NCBI gene;Acc:421484]
9. TMEM175 ENSGALG00000015368 3342 1.438 - - 0.704 - - - 0.734 - - - transmembrane protein 175 [Source:NCBI gene;Acc:427293]
10. MIB1 ENSGALG00000014974 3583 1.422 - - 0.716 - - - 0.706 - - - mindbomb E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21086]
11. CAMSAP1 ENSGALG00000001692 2617 1.414 - - 0.713 - - - 0.701 - - - calmodulin regulated spectrin associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
12. DDX55 ENSGALG00000003298 2315 0.999 - - - - - - - 0.999 - - DEAD-box helicase 55 [Source:NCBI gene;Acc:416820]
13. RPTOR ENSGALG00000034210 982 0.999 - - - - - - - 0.999 - - regulatory associated protein of MTOR complex 1 [Source:HGNC Symbol;Acc:HGNC:30287]
14. ADAM9 ENSGALG00000003398 1299 0.999 - - - - - - - 0.999 - - ADAM metallopeptidase domain 9 [Source:NCBI gene;Acc:426781]
15. SAFB ENSGALG00000013365 3175 0.999 - - - - - - - 0.999 - - scaffold attachment factor B, transcript variant X1
16. LARP1B ENSGALG00000010207 2935 0.999 - - - - - - - 0.999 - - La ribonucleoprotein domain family member 1B [Source:HGNC Symbol;Acc:HGNC:24704]
17. Sep-11 Sep-11 2005 0.999 - - - - - - - 0.999 - -
18. GPR89 GPR89 2253 0.999 - - - - - - - 0.999 - -
19. EXTL3 ENSGALG00000016630 1916 0.999 - - - - - - - 0.999 - - exostosin like glycosyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:3518]
20. MTMR6 ENSGALG00000017112 2214 0.999 - - - - - - - 0.999 - - myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
21. PRMT7 ENSGALG00000038865 2666 0.999 - - - - - - - 0.999 - - protein arginine methyltransferase 7 [Source:NCBI gene;Acc:415620]
22. DISP1 3281 0.999 - - - - - - - 0.999 - - dispatched RND transporter family member 1, transcript variant X3
23. ORC2 ENSGALG00000008234 3361 0.999 - - - - - - - 0.999 - - origin recognition complex subunit 2 [Source:NCBI gene;Acc:424077]
24. GOLGA2 ENSGALG00000004881 677 0.999 - - - - - - - 0.999 - - golgin A2, transcript variant X7
25. MBTPS1 ENSGALG00000003293 4843 0.999 - - - - - - - 0.999 - - membrane bound transcription factor peptidase, site 1 [Source:HGNC Symbol;Acc:HGNC:15456]
26. ENGASE ENSGALG00000011816 1763 0.999 - - - - - - - 0.999 - - endo-beta-N-acetylglucosaminidase [Source:HGNC Symbol;Acc:HGNC:24622]
27. PSMG1 ENSGALG00000016062 7511 0.998 - - - - - - - 0.998 - - proteasome assembly chaperone 1 [Source:NCBI gene;Acc:418520]
28. FBXO5 ENSGALG00000013607 6156 0.998 - - - - - - - 0.998 - - F-box protein 5 [Source:HGNC Symbol;Acc:HGNC:13584]
29. TBC1D12 ENSGALG00000034044 5588 0.998 - - - - - - - 0.998 - - TBC1 domain family member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
30. NOP14 ENSGALG00000015649 7039 0.998 - - - - - - - 0.998 - - NOP14 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:16821]
31. JMJD1C ENSGALG00000002942 4556 0.998 - - - - - - - 0.998 - - jumonji domain containing 1C [Source:NCBI gene;Acc:423655]
32. CASC4 ENSGALG00000008208 8338 0.998 - - - - - - - 0.998 - - cancer susceptibility 4 [Source:NCBI gene;Acc:415575]
33. BAG2 ENSGALG00000026605 3898 0.997 - - - - - - - 0.997 - - BCL2 associated athanogene 2
34. HIGD2A ENSGALG00000003348 34109 0.997 - - - - - - - 0.997 - - HIG1 hypoxia inducible domain family member 2A
35. CTPS1 ENSGALG00000042967 9532 0.996 - - - - - - - 0.996 - - CTP synthase 1 [Source:HGNC Symbol;Acc:HGNC:2519]
36. PSMD5 ENSGALG00000001637 6812 0.995 - - - - - - - 0.995 - - proteasome 26S subunit, non-ATPase 5 [Source:NCBI gene;Acc:417125]
37. TNRC18 ENSGALG00000040770 4061 0.994 - - - - - - - 0.994 - - trinucleotide repeat containing 18 [Source:HGNC Symbol;Acc:HGNC:11962]
38. KDM2B ENSGALG00000004225 11513 0.994 - - - - - - - 0.994 - - lysine demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
39. CCNYL1 ENSGALG00000008485 11958 0.994 - - - - - - - 0.994 - - cyclin Y like 1
40. ESF1 ENSGALG00000034768 8610 0.993 - - - - - - - 0.993 - - ESF1 nucleolar pre-rRNA processing protein homolog [Source:NCBI gene;Acc:428551]
41. NUDC ENSGALG00000000895 17844 0.991 - - - - - - - 0.991 - - nuclear distribution C, dynein complex regulator [Source:NCBI gene;Acc:419578]
42. PARP16 ENSGALG00000007365 9467 0.989 - - - - - - - 0.989 - - poly(ADP-ribose) polymerase family member 16 [Source:HGNC Symbol;Acc:HGNC:26040]
43. ACO1 ENSGALG00000002162 6645 0.986 - - - - - - - 0.986 - - aconitase 1, soluble [Source:NCBI gene;Acc:373916]
44. MCM5 ENSGALG00000012546 18254 0.975 - - - - - - - 0.975 - - minichromosome maintenance complex component 5 [Source:NCBI gene;Acc:418058]
45. CDH5 ENSGALG00000032349 8526 0.967 - - - - - - - 0.967 - - cadherin 5 [Source:NCBI gene;Acc:374068]
46. CTNND2 ENSGALG00000013001 11217 0.965 - - - - - - - 0.965 - - catenin delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
47. DTD1 ENSGALG00000008808 10807 0.956 - - - - - - - 0.956 - - D-tyrosyl-tRNA deacylase 1 [Source:NCBI gene;Acc:416726]
48. SRSF6 ENSGALG00000000990 12424 0.948 - - - - - - - 0.948 - - serine and arginine rich splicing factor 6 [Source:NCBI gene;Acc:419116]
49. TTC4 10377 0.946 - - - - - - - 0.946 - - tetratricopeptide repeat domain 4
50. THOC5 ENSGALG00000029223 16069 0.942 - - - - - - - 0.942 - - THO complex 5 [Source:NCBI gene;Acc:417019]
51. FKBP9 ENSGALG00000037669 12079 0.94 - - - - - - - 0.940 - - FK506 binding protein 9 [Source:NCBI gene;Acc:395652]
52. BCCIP ENSGALG00000006617 13291 0.94 - - - - - - - 0.940 - - BRCA2 and CDKN1A interacting protein [Source:HGNC Symbol;Acc:HGNC:978]
53. SKP2 ENSGALG00000003547 14637 0.939 - - - - - - - 0.939 - - S-phase kinase associated protein 2 [Source:NCBI gene;Acc:427437]
54. TAF3 ENSGALG00000006731 15569 0.935 - - - - - - - 0.935 - - TATA-box binding protein associated factor 3 [Source:NCBI gene;Acc:419107]
55. SH3BGRL3 ENSGALG00000038536 18187 0.933 - - - - - - - 0.933 - - SH3 domain binding glutamate rich protein like 3 [Source:NCBI gene;Acc:768795]
56. ATP1A1 ENSGALG00000032247 15898 0.931 - - - - - - - 0.931 - - ATPase Na+/K+ transporting subunit alpha 1 [Source:NCBI gene;Acc:396530]
57. PARL ENSGALG00000002315 15943 0.925 - - - - - - - 0.925 - - presenilin associated rhomboid like
58. LSM7 ENSGALG00000000408 19112 0.923 - - - - - - - 0.923 - - LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420055]
59. TM9SF3 ENSGALG00000005534 15290 0.92 - - - - - - - 0.920 - - transmembrane 9 superfamily member 3
60. HDAC2 ENSGALG00000014991 23458 0.909 - - - - - - - 0.909 - - histone deacetylase 2 [Source:NCBI gene;Acc:395635]
61. SPARC ENSGALG00000004184 36410 0.908 - - - - - - - 0.908 - - secreted protein acidic and cysteine rich [Source:NCBI gene;Acc:386571]
62. COPS5 ENSGALG00000030843 11942 0.899 - - - - - - - 0.899 - - COP9 signalosome subunit 5 [Source:NCBI gene;Acc:426579]
63. MPHOSPH10 ENSGALG00000003906 7029 0.891 - - - - - - - 0.891 - - M-phase phosphoprotein 10 [Source:HGNC Symbol;Acc:HGNC:7213]
64. RNF7 ENSGALG00000021117 13110 0.887 - - - - - - - 0.887 - - ring finger protein 7 [Source:NCBI gene;Acc:424781]
65. SLC25A30 ENSGALG00000016979 2625 0.87 - - - - - - - 0.870 - - solute carrier family 25 member 30 [Source:HGNC Symbol;Acc:HGNC:27371]
66. HNRNPH3 ENSGALG00000003947 28724 0.865 - - - - - - - 0.865 - - heterogeneous nuclear ribonucleoprotein H3 [Source:NCBI gene;Acc:423686]
67. FAF2 ENSGALG00000003331 4776 0.862 - - - - - - - 0.862 - - Fas associated factor family member 2 [Source:HGNC Symbol;Acc:HGNC:24666]
68. TRAM1 ENSGALG00000041112 22876 0.862 - - - - - - - 0.862 - - translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
69. METRNL ENSGALG00000028354 25565 0.861 - - - - - - - 0.861 - - meteorin like, glial cell differentiation regulator [Source:HGNC Symbol;Acc:HGNC:27584]
70. C2orf47 C2orf47 17769 0.859 - - - - - - - 0.859 - -
71. GMPPA ENSGALG00000002417 10383 0.858 - - - - - - - 0.858 - - GDP-mannose pyrophosphorylase A, transcript variant X2
72. LAP3 ENSGALG00000006334 21076 0.855 - - - - - - - 0.855 - - leucine aminopeptidase 3 [Source:NCBI gene;Acc:425306]
73. PGRMC1 ENSGALG00000020260 19059 0.845 - - - - - - - 0.845 - - progesterone receptor membrane component 1 [Source:NCBI gene;Acc:772196]
74. TMEM115 ENSGALG00000026965 13050 0.843 - - - - - - - 0.843 - - transmembrane protein 115 [Source:HGNC Symbol;Acc:HGNC:30055]
75. C4H4ORF52 C4H4ORF52 8116 0.843 - - - - - - - 0.843 - -
76. UBE2D1 ENSGALG00000021213 5876 0.84 - - - - - - 0.840 - - - ubiquitin conjugating enzyme E2 D1 [Source:NCBI gene;Acc:423641]
77. CTSO ENSGALG00000009373 4186 0.838 - - - - - - - 0.838 - - cathepsin O [Source:NCBI gene;Acc:422410]
78. TRIP13 ENSGALG00000033834 6590 0.837 - - - - - - - 0.837 - - thyroid hormone receptor interactor 13 [Source:NCBI gene;Acc:420798]
79. ISY1 ENSGALG00000005012 7477 0.834 - - 0.834 - - - - - - - ISY1 splicing factor homolog
80. SWIP-1 SWIP-1 6024 0.831 - - - - - - 0.831 - - -
81. LSM6 ENSGALG00000009985 18582 0.827 - - - - - - - 0.827 - - LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:422466]
82. GOLGA7 ENSGALG00000003483 26525 0.822 - - - - - - - 0.822 - - golgin A7 [Source:NCBI gene;Acc:426787]
83. ZC3H14 ENSGALG00000010622 7024 0.814 - - - - - - - 0.814 - - zinc finger CCCH-type containing 14 [Source:NCBI gene;Acc:423399]
84. YY1 ENSGALG00000017388 1933 0.81 - - - - - - 0.810 - - - YY1 transcription factor [Source:NCBI gene;Acc:423455]
85. CALSYNTENIN-1 CALSYNTENIN-1 11195 0.81 - - 0.810 - - - - - - -
86. MRPL17 ENSGALG00000002605 46508 0.804 - - - - - - - 0.804 - - mitochondrial ribosomal protein L17 [Source:HGNC Symbol;Acc:HGNC:14053]
87. EVL ENSGALG00000011209 5440 0.804 - - - - - - 0.804 - - - Enah/Vasp-like [Source:NCBI gene;Acc:423453]
88. AKAP7 ENSGALG00000029794 3287 0.803 - - - - - - - 0.803 - - A-kinase anchoring protein 7 [Source:HGNC Symbol;Acc:HGNC:377]
89. BAG5 ENSGALG00000031062 4498 0.803 - - 0.803 - - - - - - - BCL2 associated athanogene 5 [Source:NCBI gene;Acc:423482]
90. TYW3 ENSGALG00000032549 4869 0.801 - - 0.801 - - - - - - - tRNA-yW synthesizing protein 3 homolog [Source:NCBI gene;Acc:424720]
91. BTF3 ENSGALG00000013512 33962 0.8 - - - - - - - 0.800 - - basic transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:1125]
92. ABHD13 ENSGALG00000016853 4975 0.799 - - 0.799 - - - - - - - abhydrolase domain containing 13 [Source:NCBI gene;Acc:418763]
93. PTCD3 ENSGALG00000015773 3059 0.797 - - 0.797 - - - - - - - pentatricopeptide repeat domain 3 [Source:HGNC Symbol;Acc:HGNC:24717]
94. EMC8 ENSGALG00000005744 9422 0.796 - - - - - - - 0.796 - - ER membrane protein complex subunit 8
95. NDUFC2 ENSGALG00000029172 26136 0.796 - - 0.796 - - - - - - - NADH:ubiquinone oxidoreductase subunit C2 [Source:NCBI gene;Acc:404751]
96. gga-mir-6587 ENSGALG00000026386 9441 0.796 - - - - - - 0.796 - - - gga-mir-6587 [Source:miRBase;Acc:MI0022407]
97. NEMF ENSGALG00000012263 2250 0.795 - - 0.795 - - - - - - - nuclear export mediator factor [Source:NCBI gene;Acc:428926]
98. CDCA7L ENSGALG00000035978 2112 0.794 - - 0.794 - - - - - - - cell division cycle associated 7 like [Source:NCBI gene;Acc:420608]
99. MRPS33 ENSGALG00000028879 17966 0.793 - - 0.793 - - - - - - - mitochondrial ribosomal protein S33 [Source:NCBI gene;Acc:418119]
100. CHN1 ENSGALG00000009293 6415 0.792 - - - - - - 0.792 - - - chimerin 1 [Source:NCBI gene;Acc:429021]

There are 407 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA