Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LRRC56

Gene Name Gene ID Reads Annotation
LRRC56 ENSGALG00000041955 16 leucine rich repeat containing 56 [Source:HGNC Symbol;Acc:HGNC:25430]











Genes with expression patterns similar to LRRC56

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LRRC56 ENSGALG00000041955 16 3 - - 1.000 1.000 1.000 - - - - - leucine rich repeat containing 56 [Source:HGNC Symbol;Acc:HGNC:25430]
2. TMC3 ENSGALG00000006376 12 1 - - - 1.000 - - - - - - transmembrane channel like 3 [Source:NCBI gene;Acc:415470]
3. LHX6 ENSGALG00000001347 7 0.997 - - 0.997 - - - - - - - LIM homeobox 6 [Source:HGNC Symbol;Acc:HGNC:21735]
4. SPTSSBL ENSGALG00000026131 70 0.997 - - 0.997 - - - - - - - serine palmitoyltransferase small subunit B-like, transcript variant X6
5. ANKRD42 8 0.997 - - 0.997 - - - - - - - ankyrin repeat domain 42
6. ENSGALG00000000407 ENSGALG00000000407 32 0.996 - - 0.996 - - - - - - -
7. IKBIP ENSGALG00000026284 31 0.995 - - 0.995 - - - - - - - IKBKB interacting protein [Source:HGNC Symbol;Acc:HGNC:26430]
8. PLAG1 ENSGALG00000015407 17 0.994 - - 0.994 - - - - - - - PLAG1 zinc finger [Source:NCBI gene;Acc:429484]
9. ENSGALG00000026975 ENSGALG00000026975 8 0.993 - - 0.993 - - - - - - -
10. PSMD4 ENSGALG00000028505 16 0.992 - - 0.992 - - - - - - - proteasome 26S subunit, non-ATPase 4 [Source:NCBI gene;Acc:100216364]
11. HOXA9 ENSGALG00000028983 9298 0.992 - - 0.992 - - - - - - - homeobox A9 [Source:NCBI gene;Acc:396096]
12. DNAH7 ENSGALG00000007841 32 0.988 - - 0.988 - - - - - - - dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
13. SATB2 ENSGALG00000008135 347 0.987 - - 0.987 - - - - - - - SATB homeobox 2 [Source:NCBI gene;Acc:424063]
14. YDJC ENSGALG00000029198 14 0.986 - - 0.986 - - - - - - - YdjC chitooligosaccharide deacetylase homolog [Source:HGNC Symbol;Acc:HGNC:27158]
15. TMEM230 ENSGALG00000036876 55 0.982 - - 0.982 - - - - - - - transmembrane protein 230 [Source:NCBI gene;Acc:419518]
16. ENSGALG00000029120 ENSGALG00000029120 73 0.973 - - 0.973 - - - - - - -
17. FNDC7 ENSGALG00000001983 24 0.973 - - 0.973 - - - - - - - fibronectin type III domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26668]
18. MMP9 ENSGALG00000006992 78 0.973 - - 0.973 - - - - - - - matrix metallopeptidase 9 [Source:NCBI gene;Acc:395387]
19. CYP3A4 ENSGALG00000004436 75 0.972 - - 0.972 - - - - - - - Gallus gallus cytochrome P450 family 3 subfamily A member 4 (CYP3A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001329508]
20. ENSGALG00000006278 ENSGALG00000006278 202 0.966 - - 0.966 - - - - - - -
21. ENSGALG00000021882 ENSGALG00000021882 63 0.965 - - 0.965 - - - - - - -
22. PRKCZ ENSGALG00000001270 12 0.963 - - 0.963 - - - - - - - protein kinase C zeta [Source:HGNC Symbol;Acc:HGNC:9412]
23. SLCO4C1 ENSGALG00000026768 30 0.963 - - 0.963 - - - - - - - solute carrier organic anion transporter family member 4C1, transcript variant X4
24. LCOR ENSGALG00000028512 30 0.955 - - 0.955 - - - - - - - ligand dependent nuclear receptor corepressor, transcript variant X16
25. ZBTB21 ENSGALG00000016147 13 0.954 - - 0.954 - - - - - - - zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]
26. XYLT1 ENSGALG00000006757 169 0.954 - - 0.954 - - - - - - - xylosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:15516]
27. SAMSN1 ENSGALG00000040926 88 0.954 - - 0.954 - - - - - - - SAM domain, SH3 domain and nuclear localization signals 1 [Source:NCBI gene;Acc:418470]
28. TSPAN18 ENSGALG00000036901 14 0.953 - - 0.953 - - - - - - - tetraspanin 18 [Source:NCBI gene;Acc:395586]
29. B3GNTL1 ENSGALG00000001433 22 0.953 - - 0.953 - - - - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1 [Source:HGNC Symbol;Acc:HGNC:21727]
30. SUSD4 ENSGALG00000009388 48 0.944 - - 0.944 - - - - - - - sushi domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25470]
31. DSG2 ENSGALG00000015142 67 0.944 - - 0.944 - - - - - - - desmoglein 2 [Source:HGNC Symbol;Acc:HGNC:3049]
32. REEP2 ENSGALG00000017365 338 0.94 - - 0.940 - - - - - - - receptor accessory protein 2 [Source:HGNC Symbol;Acc:HGNC:17975]
33. C1orf131 C1orf131 141 0.933 - - 0.933 - - - - - - -
34. MDM2 ENSGALG00000009942 397 0.927 - - 0.927 - - - - - - - MDM2 proto-oncogene [Source:NCBI gene;Acc:395609]
35. ENSGALG00000004223 ENSGALG00000004223 7 0.923 - - - 0.923 - - - - - -
36. ENSGALG00000001552 ENSGALG00000001552 4 0.923 - - - 0.923 - - - - - -
37. PEAR1 ENSGALG00000028622 127 0.923 - - - 0.923 - - - - - - platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
38. LOC416959 ENSGALG00000006838 3 0.923 - - - 0.923 - - - - - - melanotransferrin-like, transcript variant X10
39. LINS LINS 18 0.923 - - - 0.923 - - - - - -
40. BAIAP2L2 ENSGALG00000012285 2 0.923 - - - 0.923 - - - - - - BAI1 associated protein 2 like 2 [Source:HGNC Symbol;Acc:HGNC:26203]
41. ENSGALG00000023692 ENSGALG00000023692 6 0.923 - - - 0.923 - - - - - -
42. ICMT ENSGALG00000024053 10 0.923 - - - 0.923 - - - - - - isoprenylcysteine carboxyl methyltransferase [Source:NCBI gene;Acc:419373]
43. FAM65B ENSGALG00000013624 2 0.923 - - - 0.923 - - - - - - family with sequence similarity 65, member B [Source:NCBI gene;Acc:421003]
44. FBXL4 ENSGALG00000015490 12 0.923 - - - 0.923 - - - - - - F-box and leucine rich repeat protein 4 [Source:HGNC Symbol;Acc:HGNC:13601]
45. FGF16 ENSGALG00000007806 8 0.923 - - - 0.923 - - - - - - fibroblast growth factor 16 [Source:NCBI gene;Acc:422330]
46. MTMR10 85 0.922 - - 0.922 - - - - - - - myotubularin related protein 10
47. PLEKHJ1 ENSGALG00000000835 55 0.921 - - 0.921 - - - - - - - pleckstrin homology domain containing J1 [Source:NCBI gene;Acc:428324]
48. NSL1/DC31 NSL1/DC31 43 0.92 - - 0.920 - - - - - - -
49. LOC769139 ENSGALG00000026754 753 0.919 - - 0.919 - - - - - - - feather keratin 1-like, transcript variant X2
50. C3ORF64 C3ORF64 49 0.916 - - 0.916 - - - - - - -
51. UBE3C ENSGALG00000006461 57 0.916 - - 0.916 - - - - - - - ubiquitin protein ligase E3C [Source:NCBI gene;Acc:420447]
52. ITGB2 ENSGALG00000007511 46 0.915 - - 0.915 - - - - - - - integrin subunit beta 2 [Source:NCBI gene;Acc:396181]
53. AFTPH ENSGALG00000008828 21 0.913 - - 0.913 - - - - - - - aftiphilin [Source:HGNC Symbol;Acc:HGNC:25951]
54. CBX7 ENSGALG00000041236 14 0.911 - - - 0.911 - - - - - - chromobox 7 [Source:HGNC Symbol;Acc:HGNC:1557]
55. F7 ENSGALG00000016833 4 0.911 - - - 0.911 - - - - - - coagulation factor VII [Source:NCBI gene;Acc:395086]
56. gga-mir-2954 ENSGALG00000026107 462 0.909 - - 0.909 - - - - - - - gga-mir-2954 [Source:miRBase;Acc:MI0013634]
57. DINB1 DINB1 113 0.907 - - 0.907 - - - - - - -
58. WDR48 ENSGALG00000006052 3575 0.905 - - 0.905 - - - - - - - WD repeat domain 48 [Source:NCBI gene;Acc:420427]
59. CNTF ENSGALG00000026207 47 0.905 - - 0.905 - - - - - - - ciliary neurotrophic factor [Source:NCBI gene;Acc:396488]
60. PPARGC1A ENSGALG00000042851 364 0.902 - - 0.902 - - - - - - - PPARG coactivator 1 alpha [Source:NCBI gene;Acc:422815]
61. PDCD6IP ENSGALG00000033500 580 0.902 - - 0.902 - - - - - - - programmed cell death 6 interacting protein [Source:NCBI gene;Acc:420725]
62. HNF4G ENSGALG00000042621 484 0.902 - - 0.902 - - - - - - - hepatocyte nuclear factor 4 gamma [Source:HGNC Symbol;Acc:HGNC:5026]
63. KIF9 ENSGALG00000005517 70 0.901 - - 0.901 - - - - - - - kinesin family member 9 [Source:HGNC Symbol;Acc:HGNC:16666]
64. MYT1L ENSGALG00000016384 147 0.9 - - 0.900 - - - - - - - myelin transcription factor 1 like [Source:HGNC Symbol;Acc:HGNC:7623]
65. STK38 ENSGALG00000000523 44 0.899 - - 0.899 - - - - - - - serine/threonine kinase 38 [Source:HGNC Symbol;Acc:HGNC:17847]
66. KIAA1549 ENSGALG00000012796 60 0.897 - - 0.897 - - - - - - - KIAA1549 [Source:HGNC Symbol;Acc:HGNC:22219]
67. LOXL1 ENSGALG00000028247 672 0.892 - - 0.892 - - - - - - - lysyl oxidase like 1
68. LIN54 ENSGALG00000011133 75 0.891 - - 0.891 - - - - - - - lin-54 DREAM MuvB core complex component [Source:HGNC Symbol;Acc:HGNC:25397]
69. TMEM150C ENSGALG00000011175 218 0.889 - - 0.889 - - - - - - - transmembrane protein 150C [Source:HGNC Symbol;Acc:HGNC:37263]
70. ROGDI ENSGALG00000001841 313 0.887 - - 0.887 - - - - - - - rogdi homolog [Source:HGNC Symbol;Acc:HGNC:29478]
71. IQGAP1 ENSGALG00000030162 1047 0.884 - - 0.884 - - - - - - - IQ motif containing GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:6110]
72. IMPG2 ENSGALG00000015322 74 0.881 - - 0.881 - - - - - - - interphotoreceptor matrix proteoglycan 2 [Source:NCBI gene;Acc:418393]
73. DAB2IP ENSGALG00000001419 100 0.88 - - 0.880 - - - - - - - DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
74. BTBD6 ENSGALG00000033813 163 0.88 - - 0.880 - - - - - - - BTB domain containing 6 [Source:HGNC Symbol;Acc:HGNC:19897]
75. POF1B ENSGALG00000006919 7 0.877 - - - 0.877 - - - - - - POF1B, actin binding protein [Source:HGNC Symbol;Acc:HGNC:13711]
76. NMRK1 ENSGALG00000015156 88 0.876 - - 0.876 - - - - - - - nicotinamide riboside kinase 1 [Source:HGNC Symbol;Acc:HGNC:26057]
77. TMEM159 ENSGALG00000027173 67 0.874 - - 0.874 - - - - - - - transmembrane protein 159 [Source:HGNC Symbol;Acc:HGNC:30136]
78. SUPT20H ENSGALG00000017047 59 0.874 - - 0.874 - - - - - - - SPT20 homolog, SAGA complex component [Source:NCBI gene;Acc:418896]
79. SBF2 ENSGALG00000005716 134 0.873 - - 0.873 - - - - - - - SET binding factor 2 [Source:NCBI gene;Acc:423043]
80. DNAAF1 ENSGALG00000003258 115 0.872 - - 0.872 - - - - - - - dynein axonemal assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:30539]
81. MGST2 ENSGALG00000009803 427 0.871 - - 0.871 - - - - - - - microsomal glutathione S-transferase 2 [Source:HGNC Symbol;Acc:HGNC:7063]
82. SPSB3 ENSGALG00000002285 1329 0.87 - - 0.870 - - - - - - - splA/ryanodine receptor domain and SOCS box containing 3 [Source:HGNC Symbol;Acc:HGNC:30629]
83. TPST2 ENSGALG00000005626 945 0.869 - - 0.869 - - - - - - - tyrosylprotein sulfotransferase 2 [Source:NCBI gene;Acc:416910]
84. ABHD14A 174 0.868 - - 0.868 - - - - - - - abhydrolase domain containing 14A
85. RPS6KA6 ENSGALG00000007097 94 0.867 - - 0.867 - - - - - - - ribosomal protein S6 kinase A6 [Source:HGNC Symbol;Acc:HGNC:10435]
86. HTR2C ENSGALG00000005853 90 0.866 - - 0.866 - - - - - - - Gallus gallus 5-hydroxytryptamine receptor 2C (HTR2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001318421]
87. ITPKB ENSGALG00000009068 324 0.865 - - 0.865 - - - - - - - inositol-trisphosphate 3-kinase B [Source:HGNC Symbol;Acc:HGNC:6179]
88. PDK1 ENSGALG00000013235 238 0.862 - - 0.862 - - - - - - - pyruvate dehydrogenase kinase 1 [Source:NCBI gene;Acc:425972]
89. FAM105B 56 0.862 - - 0.862 - - - - - - - family with sequence similarity 105, member B, transcript variant X18
90. PTPN3 ENSGALG00000022909 6 0.86 - - - 0.860 - - - - - - protein tyrosine phosphatase, non-receptor type 3 [Source:HGNC Symbol;Acc:HGNC:9655]
91. TRMT44 ENSGALG00000015594 1490 0.859 - - 0.859 - - - - - - - tRNA methyltransferase 44 homolog [Source:HGNC Symbol;Acc:HGNC:26653]
92. MAP9 ENSGALG00000020253 785 0.858 - - 0.858 - - - - - - - microtubule associated protein 9, transcript variant X7
93. NPY ENSGALG00000010983 441 0.855 - - 0.855 - - - - - - - neuropeptide Y [Source:NCBI gene;Acc:396464]
94. FAT3 ENSGALG00000017229 141 0.855 - - 0.855 - - - - - - - FAT atypical cadherin 3 [Source:NCBI gene;Acc:395167]
95. RHOV ENSGALG00000028047 75 0.853 - - 0.853 - - - - - - - ras homolog family member V [Source:HGNC Symbol;Acc:HGNC:18313]
96. ZPLD1 ENSGALG00000015347 12 0.847 - - - 0.847 - - - - - - zona pellucida like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:27022]
97. CLIC3 ENSGALG00000038789 233 0.846 - - 0.846 - - - - - - - chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
98. STK24 ENSGALG00000016885 442 0.846 - - 0.846 - - - - - - - serine/threonine kinase 24 [Source:NCBI gene;Acc:418780]
99. CEP128 ENSGALG00000010562 133 0.842 - - 0.842 - - - - - - - centrosomal protein 128 [Source:HGNC Symbol;Acc:HGNC:20359]
100. MOB1B ENSGALG00000011573 567 0.84 - - 0.840 - - - - - - - MOB kinase activator 1B [Source:HGNC Symbol;Acc:HGNC:29801]

There are 110 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA