Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LRP1B

Gene Name Gene ID Reads Annotation
LRP1B ENSGALG00000012407 125 LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]











Genes with expression patterns similar to LRP1B

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LRP1B ENSGALG00000012407 125 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
2. C10orf67 15 1.694 - - - - 0.913 0.781 - - - - chromosome 10 open reading frame 67, transcript variant X2
3. ENSGALG00000021882 ENSGALG00000021882 63 1.648 - - 0.851 - - - 0.797 - - -
4. DINB1 DINB1 113 1.615 - - 0.793 - 0.822 - - - - -
5. IFIH1 ENSGALG00000041192 78 1.427 - - - - - 0.713 - 0.714 - - interferon induced with helicase C domain 1 [Source:NCBI gene;Acc:424185]
6. MCAM ENSGALG00000030027 26 0.925 - - - - 0.925 - - - - - melanoma cell adhesion molecule [Source:NCBI gene;Acc:448832]
7. CYR61 ENSGALG00000008661 43 0.92 - - - - 0.920 - - - - - cysteine rich angiogenic inducer 61 [Source:NCBI gene;Acc:429089]
8. IRG1 IRG1 21 0.918 - - - - 0.918 - - - - -
9. PHC2 62 0.916 - - - - 0.916 - - - - - polyhomeotic homolog 2
10. TDRD12 ENSGALG00000004704 19 0.916 - - - - 0.916 - - - - - tudor domain containing 12, transcript variant X3
11. GRIN1 ENSGALG00000008898 18 0.914 - - - - 0.914 - - - - - glutamate ionotropic receptor NMDA type subunit 1 [Source:NCBI gene;Acc:404296]
12. TJP3 ENSGALG00000000748 45 0.911 - - - - 0.911 - - - - - tight junction protein 3 [Source:HGNC Symbol;Acc:HGNC:11829]
13. TMCC1 ENSGALG00000008487 65 0.904 - - - - 0.904 - - - - - transmembrane and coiled-coil domain family 1 [Source:HGNC Symbol;Acc:HGNC:29116]
14. ENSGALG00000025953 ENSGALG00000025953 65 0.901 - - - - 0.901 - - - - -
15. SYT10 ENSGALG00000012911 17 0.896 - - - - 0.896 - - - - - synaptotagmin 10 [Source:HGNC Symbol;Acc:HGNC:19266]
16. LMTK2 ENSGALG00000003479 46 0.891 - - - - 0.891 - - - - - lemur tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:17880]
17. CCDC39 ENSGALG00000021855 23 0.89 - - - - 0.890 - - - - - coiled-coil domain containing 39
18. ZBTB21 ENSGALG00000016147 13 0.89 - - 0.890 - - - - - - - zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]
19. RTDR1 RTDR1 104 0.89 - - - - 0.890 - - - - -
20. SDCCAG3 1208 0.887 - - - - 0.887 - - - - - serologically defined colon cancer antigen 3
21. AANAT ENSGALG00000001955 23 0.884 - - - - 0.884 - - - - - aralkylamine N-acetyltransferase [Source:NCBI gene;Acc:396066]
22. FAM208B 24 0.884 - - - - 0.884 - - - - - family with sequence similarity 208 member B, transcript variant X3
23. SDR42E1 ENSGALG00000005456 586 0.87 - - - - 0.870 - - - - - short chain dehydrogenase/reductase family 42E, member 1 [Source:HGNC Symbol;Acc:HGNC:29834]
24. SPTLC3 ENSGALG00000009037 35 0.867 - - - - - 0.867 - - - - serine palmitoyltransferase long chain base subunit 3 [Source:HGNC Symbol;Acc:HGNC:16253]
25. TMEM164 ENSGALG00000008076 734 0.866 - - - - 0.866 - - - - - transmembrane protein 164 [Source:NCBI gene;Acc:422344]
26. LARP4B ENSGALG00000006672 57 0.864 - - - - 0.864 - - - - - La ribonucleoprotein domain family member 4B [Source:HGNC Symbol;Acc:HGNC:28987]
27. MTMR10 85 0.863 - - 0.863 - - - - - - - myotubularin related protein 10
28. ITGB2 ENSGALG00000007511 46 0.863 - - 0.863 - - - - - - - integrin subunit beta 2 [Source:NCBI gene;Acc:396181]
29. MAP3K21 ENSGALG00000011008 54 0.86 - - - - 0.860 - - - - - mitogen-activated protein kinase kinase kinase 21 [Source:HGNC Symbol;Acc:HGNC:29798]
30. ENSGALG00000024018 ENSGALG00000024018 37 0.86 - - - - 0.860 - - - - -
31. CRAT ENSGALG00000037443 78 0.86 - - - - 0.860 - - - - - carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2342]
32. GLB1L ENSGALG00000011328 223 0.859 - - - - 0.859 - - - - - galactosidase beta 1 like [Source:HGNC Symbol;Acc:HGNC:28129]
33. ERN2 ENSGALG00000027592 186 0.858 - - - - 0.858 - - - - - endoplasmic reticulum to nucleus signaling 2 [Source:NCBI gene;Acc:771230]
34. REEP2 ENSGALG00000017365 338 0.858 - - 0.858 - - - - - - - receptor accessory protein 2 [Source:HGNC Symbol;Acc:HGNC:17975]
35. TSPAN18 ENSGALG00000036901 14 0.853 - - 0.853 - - - - - - - tetraspanin 18 [Source:NCBI gene;Acc:395586]
36. HOMER3 ENSGALG00000003058, ENSGALG00000003074 1571 0.853 - - - - 0.853 - - - - - homer scaffolding protein 3, transcript variant X4
37. SKIDA1 ENSGALG00000017395 103 0.843 - - - - - 0.843 - - - - SKI/DACH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:32697]
38. ENSGALG00000028863 ENSGALG00000028863 665 0.841 - - - - 0.841 - - - - -
39. MUL1 ENSGALG00000042761 1312 0.839 - - - - 0.839 - - - - - mitochondrial E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:25762]
40. FRS2 ENSGALG00000009966 63 0.839 - - - - 0.839 - - - - - fibroblast growth factor receptor substrate 2 [Source:NCBI gene;Acc:417845]
41. MARVELD3 ENSGALG00000012886 155 0.838 - - - - 0.838 - - - - - MARVEL domain containing 3
42. ENSGALG00000000407 ENSGALG00000000407 32 0.837 - - 0.837 - - - - - - -
43. LHX6 ENSGALG00000001347 7 0.836 - - 0.836 - - - - - - - LIM homeobox 6 [Source:HGNC Symbol;Acc:HGNC:21735]
44. SPTSSBL ENSGALG00000026131 70 0.836 - - 0.836 - - - - - - - serine palmitoyltransferase small subunit B-like, transcript variant X6
45. ANKRD42 8 0.836 - - 0.836 - - - - - - - ankyrin repeat domain 42
46. DEAF1 ENSGALG00000034225 439 0.834 - - - - 0.834 - - - - - DEAF1, transcription factor [Source:NCBI gene;Acc:423017]
47. CCDC180 109 0.833 - - - - 0.833 - - - - - coiled-coil domain containing 180
48. PLAG1 ENSGALG00000015407 17 0.832 - - 0.832 - - - - - - - PLAG1 zinc finger [Source:NCBI gene;Acc:429484]
49. IKBIP ENSGALG00000026284 31 0.832 - - 0.832 - - - - - - - IKBKB interacting protein [Source:HGNC Symbol;Acc:HGNC:26430]
50. LRRC56 ENSGALG00000041955 16 0.831 - - 0.831 - - - - - - - leucine rich repeat containing 56 [Source:HGNC Symbol;Acc:HGNC:25430]
51. ENSGALG00000026975 ENSGALG00000026975 8 0.831 - - 0.831 - - - - - - -
52. GUF1 ENSGALG00000014217 211 0.83 - - - - 0.830 - - - - - GUF1 homolog, GTPase [Source:HGNC Symbol;Acc:HGNC:25799]
53. HOXA9 ENSGALG00000028983 9298 0.83 - - 0.830 - - - - - - - homeobox A9 [Source:NCBI gene;Acc:396096]
54. PSMD4 ENSGALG00000028505 16 0.828 - - 0.828 - - - - - - - proteasome 26S subunit, non-ATPase 4 [Source:NCBI gene;Acc:100216364]
55. SATB2 ENSGALG00000008135 347 0.826 - - 0.826 - - - - - - - SATB homeobox 2 [Source:NCBI gene;Acc:424063]
56. KIAA1199 KIAA1199 6 0.825 - - - - - 0.825 - - - -
57. DNAH7 ENSGALG00000007841 32 0.824 - - 0.824 - - - - - - - dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
58. KIAA1549 ENSGALG00000012796 60 0.823 - - 0.823 - - - - - - - KIAA1549 [Source:HGNC Symbol;Acc:HGNC:22219]
59. TMEM230 ENSGALG00000036876 55 0.823 - - 0.823 - - - - - - - transmembrane protein 230 [Source:NCBI gene;Acc:419518]
60. YDJC ENSGALG00000029198 14 0.822 - - 0.822 - - - - - - - YdjC chitooligosaccharide deacetylase homolog [Source:HGNC Symbol;Acc:HGNC:27158]
61. FNDC7 ENSGALG00000001983 24 0.822 - - 0.822 - - - - - - - fibronectin type III domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26668]
62. PRRG4 ENSGALG00000012032 96 0.821 - - - - 0.821 - - - - - proline rich and Gla domain 4 [Source:NCBI gene;Acc:421600]
63. NUMA1 ENSGALG00000001258 8406 0.82 - - - - - 0.820 - - - - nuclear mitotic apparatus protein 1 [Source:NCBI gene;Acc:768717]
64. MGST2 ENSGALG00000009803 427 0.82 - - 0.820 - - - - - - - microsomal glutathione S-transferase 2 [Source:HGNC Symbol;Acc:HGNC:7063]
65. MRRF ENSGALG00000001333 2102 0.819 - - - - 0.819 - - - - - mitochondrial ribosome recycling factor [Source:NCBI gene;Acc:417110]
66. ENSGALG00000001004 ENSGALG00000001004 17 0.819 - - - - - - - 0.819 - -
67. XYLT1 ENSGALG00000006757 169 0.818 - - 0.818 - - - - - - - xylosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:15516]
68. MMP9 ENSGALG00000006992 78 0.818 - - 0.818 - - - - - - - matrix metallopeptidase 9 [Source:NCBI gene;Acc:395387]
69. CYP3A4 ENSGALG00000004436 75 0.815 - - 0.815 - - - - - - - Gallus gallus cytochrome P450 family 3 subfamily A member 4 (CYP3A4), mRNA. [Source:RefSeq mRNA;Acc:NM_001329508]
70. SIRT5 ENSGALG00000012692 3196 0.815 - - - - 0.815 - - - - - sirtuin 5 [Source:NCBI gene;Acc:420834]
71. NMRK1 ENSGALG00000015156 88 0.812 - - 0.812 - - - - - - - nicotinamide riboside kinase 1 [Source:HGNC Symbol;Acc:HGNC:26057]
72. IMPG2 ENSGALG00000015322 74 0.811 - - 0.811 - - - - - - - interphotoreceptor matrix proteoglycan 2 [Source:NCBI gene;Acc:418393]
73. ENSGALG00000001398 ENSGALG00000001398 3248 0.808 - - - - 0.808 - - - - -
74. ABHD14A 174 0.807 - - 0.807 - - - - - - - abhydrolase domain containing 14A
75. ENSGALG00000028221 ENSGALG00000028221 1663 0.805 - - - - 0.805 - - - - -
76. ENSGALG00000029120 ENSGALG00000029120 73 0.804 - - 0.804 - - - - - - -
77. C1orf131 C1orf131 141 0.803 - - 0.803 - - - - - - -
78. ENSGALG00000006278 ENSGALG00000006278 202 0.802 - - 0.802 - - - - - - -
79. SPSB3 ENSGALG00000002285 1329 0.798 - - 0.798 - - - - - - - splA/ryanodine receptor domain and SOCS box containing 3 [Source:HGNC Symbol;Acc:HGNC:30629]
80. ACVR2A ENSGALG00000012444 324 0.798 - - - - 0.798 - - - - - activin A receptor type 2A [Source:NCBI gene;Acc:396324]
81. CNP ENSGALG00000003457 191 0.798 - - - - 0.798 - - - - - 2',3'-cyclic nucleotide 3' phosphodiesterase [Source:NCBI gene;Acc:395921]
82. PRKCZ ENSGALG00000001270 12 0.797 - - 0.797 - - - - - - - protein kinase C zeta [Source:HGNC Symbol;Acc:HGNC:9412]
83. NSL1/DC31 NSL1/DC31 43 0.797 - - 0.797 - - - - - - -
84. B3GNTL1 ENSGALG00000001433 22 0.795 - - 0.795 - - - - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1 [Source:HGNC Symbol;Acc:HGNC:21727]
85. UBE3C ENSGALG00000006461 57 0.79 - - 0.790 - - - - - - - ubiquitin protein ligase E3C [Source:NCBI gene;Acc:420447]
86. KLF5 ENSGALG00000016927 1080 0.788 - - - - 0.788 - - - - - Kruppel like factor 5 [Source:HGNC Symbol;Acc:HGNC:6349]
87. FAT3 ENSGALG00000017229 141 0.788 - - 0.788 - - - - - - - FAT atypical cadherin 3 [Source:NCBI gene;Acc:395167]
88. SBF2 ENSGALG00000005716 134 0.785 - - 0.785 - - - - - - - SET binding factor 2 [Source:NCBI gene;Acc:423043]
89. RHOV ENSGALG00000028047 75 0.785 - - 0.785 - - - - - - - ras homolog family member V [Source:HGNC Symbol;Acc:HGNC:18313]
90. RAB30 ENSGALG00000017248 359 0.784 - - - - 0.784 - - - - - RAB30, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9770]
91. KAT6B ENSGALG00000005035 301 0.784 - - - - 0.784 - - - - - lysine acetyltransferase 6B [Source:HGNC Symbol;Acc:HGNC:17582]
92. SLCO4C1 ENSGALG00000026768 30 0.784 - - 0.784 - - - - - - - solute carrier organic anion transporter family member 4C1, transcript variant X4
93. TPST2 ENSGALG00000005626 945 0.784 - - 0.784 - - - - - - - tyrosylprotein sulfotransferase 2 [Source:NCBI gene;Acc:416910]
94. ENGASE ENSGALG00000011816 1763 0.784 - - - - 0.784 - - - - - endo-beta-N-acetylglucosaminidase [Source:HGNC Symbol;Acc:HGNC:24622]
95. SAMSN1 ENSGALG00000040926 88 0.783 - - 0.783 - - - - - - - SAM domain, SH3 domain and nuclear localization signals 1 [Source:NCBI gene;Acc:418470]
96. LIMK1 ENSGALG00000001076 1931 0.782 - - - - 0.782 - - - - - LIM domain kinase 1 [Source:NCBI gene;Acc:373922]
97. DNAJC27 ENSGALG00000028967 1127 0.782 - - - - 0.782 - - - - - DnaJ heat shock protein family (Hsp40) member C27 [Source:NCBI gene;Acc:402783]
98. TMEM150C ENSGALG00000011175 218 0.782 - - 0.782 - - - - - - - transmembrane protein 150C [Source:HGNC Symbol;Acc:HGNC:37263]
99. ZNF804A ENSGALG00000023886 52 0.781 - - - - - 0.781 - - - - zinc finger protein 804A [Source:HGNC Symbol;Acc:HGNC:21711]
100. ENSGALG00000025721 ENSGALG00000025721 33 0.781 - - - - - 0.781 - - - -

There are 135 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA