Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LMX1B

Gene Name Gene ID Reads Annotation
LMX1B ENSGALG00000040582 34 LIM homeobox transcription factor 1 beta [Source:NCBI gene;Acc:396312]











Genes with expression patterns similar to LMX1B

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LMX1B ENSGALG00000040582 34 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 LIM homeobox transcription factor 1 beta [Source:NCBI gene;Acc:396312]
2. GPCPD1 ENSGALG00000009130 24 1.76 - - - - - - - 0.980 - 0.780 Gallus gallus glycerophosphocholine phosphodiesterase 1 (GPCPD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001318987]
3. REEP1 ENSGALG00000015786 7 1.632 - - - - - 0.709 - 0.923 - - receptor accessory protein 1 [Source:HGNC Symbol;Acc:HGNC:25786]
4. AHR2 ENSGALG00000023742 21 1.422 - - - - 0.705 - - - - 0.717 Gallus gallus aryl hydrocarbon receptor 2 (AHR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001319008]
5. FAM83B ENSGALG00000016299 17 1.414 - - 0.701 - - - - - - 0.713 family with sequence similarity 83 member B [Source:HGNC Symbol;Acc:HGNC:21357]
6. FANCF ENSGALG00000003660 25 1.413 - - - - 0.705 - 0.708 - - - FA complementation group F [Source:HGNC Symbol;Acc:HGNC:3587]
7. ANKFN1 ENSGALG00000003105 15 1 - - - - - - - 1.000 - - ankyrin repeat and fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26766]
8. RAB13 RAB13 22 1 - - - - - - - 1.000 - -
9. DDX11 49 1 - - - - - - - 1.000 - - DEAD/H-box helicase 11, transcript variant X1
10. TUB ENSGALG00000005986 85 1 - - - - - - - 1.000 - - tubby bipartite transcription factor [Source:HGNC Symbol;Acc:HGNC:12406]
11. STRADB ENSGALG00000008373 10 0.98 - - - - - - - 0.980 - - STE20-related kinase adaptor beta [Source:HGNC Symbol;Acc:HGNC:13205]
12. SORL1 ENSGALG00000006598 39 0.98 - - - - - - - 0.980 - - sortilin related receptor 1 [Source:NCBI gene;Acc:395998]
13. SASH1 ENSGALG00000012342 28 0.98 - - - - - - - 0.980 - - SAM and SH3 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19182]
14. DRG11 DRG11 32 0.98 - - - - - - - 0.980 - -
15. CATHL1 ENSGALG00000027973 98 0.98 - - - - - - - 0.980 - - cathelicidin-1 [Source:NCBI gene;Acc:414337]
16. BAI3 BAI3 106 0.98 - - - - - - - 0.980 - -
17. STK38 ENSGALG00000000523 44 0.98 - - - - - - - 0.980 - - serine/threonine kinase 38 [Source:HGNC Symbol;Acc:HGNC:17847]
18. PLCE1 ENSGALG00000039528 151 0.956 - - - - - - - 0.956 - - phospholipase C epsilon 1
19. ENSGALG00000012780 ENSGALG00000012780 10 0.948 - - - - 0.948 - - - - -
20. IQSEC3 ENSGALG00000012975 4 0.948 - - - 0.948 - - - - - - IQ motif and Sec7 domain 3, transcript variant X5
21. SLC10A4 ENSGALG00000033908 300 0.923 - - - - - - - 0.923 - - solute carrier family 10 member 4 [Source:HGNC Symbol;Acc:HGNC:22980]
22. ST3GAL2 ENSGALG00000002651 20 0.923 - - - - - - - 0.923 - - ST3 beta-galactoside alpha-2,3-sialyltransferase 2 [Source:NCBI gene;Acc:395139]
23. IL2RB ENSGALG00000012472 7 0.923 - - - - - - - 0.923 - - Gallus gallus interleukin 2 receptor subunit beta (IL2RB), mRNA. [Source:RefSeq mRNA;Acc:NM_001318989]
24. LZTS2 ENSGALG00000023612 9 0.923 - - - - - - - 0.923 - - leucine zipper tumor suppressor 2 [Source:HGNC Symbol;Acc:HGNC:29381]
25. HOPX ENSGALG00000011404 10 0.923 - - - - - - - 0.923 - - HOP homeobox [Source:NCBI gene;Acc:395241]
26. SLCO2A1 ENSGALG00000006471 18 0.923 - - - - - - - 0.923 - - solute carrier organic anion transporter family member 2A1 [Source:NCBI gene;Acc:424862]
27. HPDL ENSGALG00000023348 1 0.923 - - - - - - - 0.923 - - 4-hydroxyphenylpyruvate dioxygenase like [Source:HGNC Symbol;Acc:HGNC:28242]
28. MIS18A ENSGALG00000015884 25 0.923 - - - - - - - 0.923 - - MIS18 kinetochore protein A [Source:HGNC Symbol;Acc:HGNC:1286]
29. PROZ ENSGALG00000016832 6 0.923 - - - - - - - 0.923 - - protein Z, vitamin K dependent plasma glycoprotein [Source:HGNC Symbol;Acc:HGNC:9460]
30. HMGCS2 ENSGALG00000002960 54 0.923 - - - - - - - 0.923 - - 3-hydroxy-3-methylglutaryl-CoA synthase 2 [Source:HGNC Symbol;Acc:HGNC:5008]
31. GRIA4 ENSGALG00000038995 29 0.923 - - - - - - - 0.923 - - glutamate ionotropic receptor AMPA type subunit 4 [Source:NCBI gene;Acc:396137]
32. ENSGALG00000026578 ENSGALG00000026578 4 0.923 - - - - - - - 0.923 - -
33. ATP6V1H ENSGALG00000013621 13 0.923 - - - - - - - 0.923 - - ATPase H+ transporting V1 subunit H [Source:NCBI gene;Acc:426199]
34. ENSGALG00000005026 ENSGALG00000005026 9 0.923 - - - - - - - 0.923 - -
35. gga-mir-99a ENSGALG00000018242 192 0.923 - - - - - - - 0.923 - - gga-mir-99a [Source:miRBase;Acc:MI0001173]
36. CAMK2A ENSGALG00000005621 3 0.923 - - - - - - - 0.923 - - calcium/calmodulin dependent protein kinase II alpha [Source:NCBI gene;Acc:374175]
37. PREX1 ENSGALG00000004621 48 0.923 - - - - - - - 0.923 - - phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 [Source:HGNC Symbol;Acc:HGNC:32594]
38. OVCH2 ENSGALG00000005318 8 0.923 - - - - - - - 0.923 - - ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
39. MCAM ENSGALG00000030027 26 0.923 - - - - - - - 0.923 - - melanoma cell adhesion molecule [Source:NCBI gene;Acc:448832]
40. SLC44A1 ENSGALG00000015439 32 0.923 - - - - - - - 0.923 - - solute carrier family 44 member 1 [Source:HGNC Symbol;Acc:HGNC:18798]
41. C8orf37 ENSGALG00000038971 5 0.923 - - - - - - - 0.923 - - chromosome 8 open reading frame 37 [Source:HGNC Symbol;Acc:HGNC:27232]
42. HHAT ENSGALG00000009881 7 0.923 - - - - - - - 0.923 - - hedgehog acyltransferase [Source:HGNC Symbol;Acc:HGNC:18270]
43. CCR5 ENSGALG00000037077 23 0.923 - - - - - - - 0.923 - - C-C motif chemokine receptor 5 [Source:NCBI gene;Acc:420695]
44. MYRFL ENSGALG00000019352 2 0.923 - - - - - - - 0.923 - - myelin regulatory factor like [Source:HGNC Symbol;Acc:HGNC:26316]
45. SVOPL ENSGALG00000012812 27 0.923 - - - - - - - 0.923 - - SVOP like [Source:HGNC Symbol;Acc:HGNC:27034]
46. GAL4 GAL4 2 0.923 - - - - - - - 0.923 - -
47. FAM166A ENSGALG00000045172 0 0.923 - - - - - - - 0.923 - - family with sequence similarity 166 member A [Source:HGNC Symbol;Acc:HGNC:33818]
48. SOS2 ENSGALG00000012273 41 0.923 - - - - - - - 0.923 - - SOS Ras/Rho guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:11188]
49. TM6SF2 ENSGALG00000029015 109 0.923 - - - - - - - 0.923 - - transmembrane 6 superfamily member 2 [Source:HGNC Symbol;Acc:HGNC:11861]
50. GTF2E1L ENSGALG00000013600 4 0.923 - - - - - - - 0.923 - - general transcription factor IIE subunit 1-like
51. CR1L ENSGALG00000023950 98 0.923 - - - - - - - 0.923 - - complement C3b/C4b receptor 1 like [Source:NCBI gene;Acc:419853]
52. DYDC1 ENSGALG00000002432 54 0.923 - - - - - - - 0.923 - - DPY30 domain containing 1 [Source:NCBI gene;Acc:423627]
53. ITM2B ENSGALG00000016996 1112 0.923 - - - - - - - 0.923 - - integral membrane protein 2B [Source:NCBI gene;Acc:395969]
54. NR4A3 ENSGALG00000013568 1 0.923 - - - - - - - 0.923 - - nuclear receptor subfamily 4 group A member 3 [Source:HGNC Symbol;Acc:HGNC:7982]
55. ENSGALG00000024369 ENSGALG00000024369 4 0.923 - - - - - - - 0.923 - -
56. GSTT1 ENSGALG00000006344 22 0.923 - - - - - - - 0.923 - - glutathione S-transferase theta 1 [Source:NCBI gene;Acc:396322]
57. VSNL1 ENSGALG00000016464 19 0.923 - - - - - - - 0.923 - - visinin like 1 [Source:NCBI gene;Acc:396189]
58. SPAG8 2 0.923 - - - - - - - 0.923 - - sperm associated antigen 8, transcript variant X3
59. UTS2 ENSGALG00000000556 0 0.923 - - - - - - - 0.923 - - urotensin 2 [Source:NCBI gene;Acc:404535]
60. HERPUD1 ENSGALG00000001220 18 0.923 - - - - - - - 0.923 - - homocysteine inducible ER protein with ubiquitin like domain 1 [Source:HGNC Symbol;Acc:HGNC:13744]
61. SLC1A2 ENSGALG00000037556 22 0.923 - - - - - - - 0.923 - - solute carrier family 1 member 2 [Source:NCBI gene;Acc:423156]
62. PLCH2 ENSGALG00000001207 7 0.923 - - - - - - - 0.923 - - phospholipase C eta 2 [Source:HGNC Symbol;Acc:HGNC:29037]
63. ANKRD42 8 0.923 - - - - - - - 0.923 - - ankyrin repeat domain 42
64. TVB TVB 11 0.923 - - - - - - - 0.923 - -
65. ANKFY1 ENSGALG00000001467 21 0.923 - - - - - - - 0.923 - - ankyrin repeat and FYVE domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20763]
66. LRRC3B ENSGALG00000011314 26 0.906 - - - - - - - 0.906 - - leucine rich repeat containing 3B [Source:HGNC Symbol;Acc:HGNC:28105]
67. GBP ENSGALG00000026152 38 0.891 - - - 0.891 - - - - - - Gallus gallus guanylate binding protein (GBP), mRNA. [Source:RefSeq mRNA;Acc:NM_204652]
68. ENSGALG00000005445 ENSGALG00000005445 16 0.863 - - - - - - - 0.863 - -
69. HDAC10 ENSGALG00000041251 57 0.855 - - - - - - - 0.855 - - histone deacetylase 10 [Source:HGNC Symbol;Acc:HGNC:18128]
70. NTRK2 ENSGALG00000012594 24 0.855 - - - - - - - 0.855 - - neurotrophic receptor tyrosine kinase 2 [Source:NCBI gene;Acc:396157]
71. SK2 SK2 74 0.843 - - - - - - - 0.843 - -
72. HOXD11 ENSGALG00000039629 658 0.836 - - - - - - - 0.836 - - homeobox D11 [Source:NCBI gene;Acc:395328]
73. FAM19A1 32 0.83 - - - - 0.830 - - - - - family with sequence similarity 19 member A1, C-C motif chemokine like, transcript variant X5
74. UCP3 ENSGALG00000017316 30 0.823 - - - - - - - - - 0.823 uncoupling protein 3 [Source:NCBI gene;Acc:373896]
75. ADC ADC 178 0.816 - - - - 0.816 - - - - -
76. AVDL ENSGALG00000021848 1 0.812 - - - 0.812 - - - - - - avidin-like, transcript variant X2
77. RGS10 ENSGALG00000009422 10 0.812 - - - 0.812 - - - - - - regulator of G protein signaling 10 [Source:HGNC Symbol;Acc:HGNC:9992]
78. ENSGALG00000013079 ENSGALG00000013079 12 0.812 - - - 0.812 - - - - - -
79. XKRX ENSGALG00000006637 13 0.812 - - - 0.812 - - - - - - XK related, X-linked, transcript variant X4
80. ENSGALG00000026721 ENSGALG00000026721 1 0.812 - - - 0.812 - - - - - -
81. TP53TG5 ENSGALG00000021357 1 0.812 - - - 0.812 - - - - - - TP53 target 5, transcript variant X9
82. CTSD ENSGALG00000006613 4 0.812 - - - 0.812 - - - - - - cathepsin D [Source:NCBI gene;Acc:396090]
83. gga-mir-218-1 ENSGALG00000018327 3 0.812 - - - 0.812 - - - - - - gga-mir-218-1 [Source:miRBase;Acc:MI0001212]
84. HOXD8 ENSGALG00000037272 4338 0.812 - - - 0.812 - - - - - - homeobox D8 [Source:NCBI gene;Acc:396301]
85. ENSGALG00000021026 ENSGALG00000021026 2 0.812 - - - 0.812 - - - - - -
86. IRX6 ENSGALG00000023738 2 0.812 - - - 0.812 - - - - - - iroquois homeobox 6 [Source:HGNC Symbol;Acc:HGNC:14675]
87. ENSGALG00000018431 ENSGALG00000018431 2 0.812 - - - 0.812 - - - - - -
88. ENSGALG00000028038 ENSGALG00000028038 9 0.812 - - - 0.812 - - - - - -
89. FIP1L1 ENSGALG00000013943 15 0.808 - - - - - - - - - 0.808 factor interacting with PAPOLA and CPSF1, transcript variant X5
90. SYNJ2BP ENSGALG00000009387, ENSGALG00000035537 124 0.808 - - - - - - - 0.808 - - synaptojanin 2 binding protein, transcript variant X2
91. PWP2 60 0.798 - - - - - - - 0.798 - - PWP2, small subunit processome component
92. KLF12 ENSGALG00000016926 197 0.79 - - - - - - 0.790 - - - Kruppel like factor 12 [Source:HGNC Symbol;Acc:HGNC:6346]
93. SPRTN ENSGALG00000011065 24 0.788 - - - - - - - 0.788 - - SprT-like N-terminal domain [Source:HGNC Symbol;Acc:HGNC:25356]
94. ENSGALG00000006951 ENSGALG00000006951 48 0.786 - - 0.786 - - - - - - -
95. TBX2 ENSGALG00000034297 57 0.785 - - - 0.785 - - - - - - T-box 2 [Source:HGNC Symbol;Acc:HGNC:11597]
96. ENSGALG00000007420 ENSGALG00000007420 7 0.784 - - - 0.784 - - - - - -
97. COL24A1 ENSGALG00000006864 161 0.78 - - - - - - - 0.780 - - collagen type XXIV alpha 1 chain, transcript variant X4
98. SMC1B ENSGALG00000014228 19 0.777 - - - - - - - - - 0.777 structural maintenance of chromosomes 1B [Source:HGNC Symbol;Acc:HGNC:11112]
99. SPP2 ENSGALG00000004129 34 0.777 - - - - - - - - - 0.777 secreted phosphoprotein 2 [Source:NCBI gene;Acc:396080]
100. gga-mir-1725 gga-mir-1725 178 0.776 - - - - - - - 0.776 - -

There are 87 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA